Wall clock time and date at job start Mon Mar 30 2020 02:46:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31280 * 1 3 3 Si 1.86796 * 120.00373 * 2 1 4 4 H 1.48495 * 109.47271 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.46892 * 299.99915 * 3 2 1 6 6 H 1.48494 * 109.47564 * 59.99698 * 3 2 1 7 7 C 1.39169 * 119.99753 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00213 * 180.02562 * 7 2 1 9 9 N 1.36703 * 120.00012 * 0.02562 * 7 2 1 10 10 C 1.34777 * 120.00161 * 179.97438 * 9 7 2 11 11 O 1.21535 * 119.99875 * 359.97438 * 10 9 7 12 12 C 1.48252 * 119.99827 * 180.02562 * 10 9 7 13 13 C 1.39294 * 120.49043 * 179.97438 * 12 10 9 14 14 C 1.39532 * 118.32137 * 179.97438 * 13 12 10 15 15 O 1.35506 * 120.44830 * 180.02562 * 14 13 12 16 16 N 1.32659 * 119.10021 * 0.02562 * 14 13 12 17 17 C 1.32371 * 120.91029 * 359.97438 * 16 14 13 18 18 O 1.35465 * 119.07252 * 179.97438 * 17 16 14 19 19 N 1.32086 * 121.84896 * 0.27925 * 17 16 14 20 20 H 0.97002 * 119.99583 * 0.02562 * 1 2 3 21 21 H 0.97004 * 120.00206 * 359.97438 * 9 7 2 22 22 H 1.08001 * 120.84052 * 0.02562 * 13 12 10 23 23 H 0.96705 * 114.00586 * 269.97994 * 15 14 13 24 24 H 0.96696 * 113.99993 * 90.00469 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3128 0.0000 0.0000 3 14 2.2469 1.6176 0.0000 4 1 3.7068 1.3462 -0.0006 5 1 1.8882 2.3963 -1.2126 6 1 1.8882 2.3964 1.2124 7 6 2.0086 -1.2053 0.0005 8 1 3.0886 -1.2054 0.0010 9 7 1.3250 -2.3891 0.0005 10 6 1.9988 -3.5564 0.0005 11 8 3.2142 -3.5564 0.0001 12 6 1.2574 -4.8402 0.0000 13 6 1.9434 -6.0525 -0.0006 14 6 1.2004 -7.2335 -0.0006 15 8 1.8236 -8.4368 -0.0005 16 7 -0.1243 -7.1624 -0.0005 17 6 -0.7423 -5.9918 0.0000 18 8 -2.0967 -5.9626 -0.0006 19 7 -0.0756 -4.8516 -0.0050 20 1 -0.4849 0.8401 -0.0004 21 1 0.3550 -2.3891 0.0005 22 1 3.0232 -6.0777 -0.0002 23 1 2.0042 -8.7864 -0.8840 24 1 -2.4902 -5.9546 0.8826 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000606267358.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:49 Heat of formation + Delta-G solvation = -93.130667 kcal Electronic energy + Delta-G solvation = -14704.478151 eV Core-core repulsion = 11810.975441 eV Total energy + Delta-G solvation = -2893.502709 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 225.058 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -42.43399 -40.10569 -39.22942 -37.72536 -36.24912 -34.50032 -33.39037 -31.90583 -27.96920 -25.76447 -25.08188 -22.26782 -20.57471 -19.90478 -19.70507 -19.15101 -17.53890 -17.03073 -16.84439 -16.46407 -16.20626 -15.81463 -15.61676 -14.79028 -14.11607 -13.66442 -13.57001 -12.99659 -12.91746 -12.55461 -12.09266 -12.02931 -11.82343 -11.62150 -11.09340 -10.59502 -10.32292 -10.23607 -8.66612 -6.08928 -0.68443 -0.37923 1.35268 1.43044 1.58827 1.71051 1.78351 2.20649 2.38357 2.59302 2.68879 3.15345 3.54295 3.79039 3.83929 4.32071 4.44693 4.93411 5.25567 5.53922 5.77586 6.33673 6.44873 6.47873 6.72102 6.88665 7.28341 7.83717 8.49066 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.043643 B = 0.007037 C = 0.006080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 641.408711 B = 3977.981125 C = 4604.493143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C -0.006 4.006 3 Si 1.009 2.991 4 H -0.265 1.265 5 H -0.266 1.266 6 H -0.266 1.266 7 C -0.335 4.335 8 H 0.098 0.902 9 N -0.515 5.515 10 C 0.450 3.550 11 O -0.620 6.620 12 C 0.182 3.818 13 C -0.205 4.205 14 C 0.398 3.602 15 O -0.466 6.466 16 N -0.556 5.556 17 C 0.517 3.483 18 O -0.457 6.457 19 N -0.538 5.538 20 H 0.289 0.711 21 H 0.405 0.595 22 H 0.173 0.827 23 H 0.435 0.565 24 H 0.433 0.567 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.517 -9.646 0.011 9.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.211 4.211 3 Si 0.830 3.170 4 H -0.189 1.189 5 H -0.191 1.191 6 H -0.191 1.191 7 C -0.466 4.466 8 H 0.116 0.884 9 N -0.147 5.147 10 C 0.238 3.762 11 O -0.509 6.509 12 C 0.037 3.963 13 C -0.230 4.230 14 C 0.209 3.791 15 O -0.278 6.278 16 N -0.295 5.295 17 C 0.212 3.788 18 O -0.264 6.264 19 N -0.269 5.269 20 H 0.099 0.901 21 H 0.240 0.760 22 H 0.190 0.810 23 H 0.299 0.701 24 H 0.297 0.703 Dipole moment (debyes) X Y Z Total from point charges -1.906 -9.432 -0.001 9.623 hybrid contribution 0.360 0.519 0.011 0.632 sum -1.546 -8.913 0.010 9.046 Atomic orbital electron populations 1.69666 1.07564 1.30671 1.45110 1.26477 0.96588 1.03411 0.94576 0.84644 0.78254 0.75365 0.78712 1.18858 1.19133 1.19066 1.20106 0.93715 0.83204 1.49541 0.88408 1.41958 1.10425 1.04743 1.57528 1.17589 0.86801 0.83101 0.88724 1.90587 1.13467 1.86570 1.60256 1.21423 0.87926 0.94976 0.91990 1.22918 1.04525 0.90879 1.04698 1.18915 0.85158 0.86081 0.88905 1.84682 1.75672 1.30761 1.36642 1.67396 1.12105 1.30641 1.19338 1.19824 0.86539 0.82011 0.90441 1.84682 1.10378 1.94906 1.36405 1.68001 1.09119 1.32165 1.17609 0.90148 0.75959 0.80957 0.70087 0.70320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -46.76 13.04 21.70 0.28 -46.47 14 2 C -0.01 -0.33 5.50 85.00 0.47 0.14 14 3 Si 1.01 40.07 29.55 68.60 2.03 42.10 14 4 H -0.26 -10.48 7.11 99.48 0.71 -9.78 14 5 H -0.27 -10.09 7.11 99.48 0.71 -9.39 14 6 H -0.27 -10.04 7.11 99.48 0.71 -9.33 14 7 C -0.34 -18.56 9.68 84.16 0.81 -17.74 14 8 H 0.10 5.60 7.15 -2.91 -0.02 5.58 14 9 N -0.51 -27.46 5.27 -309.31 -1.63 -29.09 14 10 C 0.45 22.75 7.77 86.91 0.68 23.42 14 11 O -0.62 -34.11 15.98 -3.83 -0.06 -34.17 14 12 C 0.18 7.52 6.79 41.84 0.28 7.81 14 13 C -0.21 -6.91 9.67 22.84 0.22 -6.69 14 14 C 0.40 11.46 7.83 84.88 0.66 12.12 14 15 O -0.47 -9.75 13.57 -88.08 -1.20 -10.95 14 16 N -0.56 -17.40 10.47 -426.45 -4.46 -21.86 14 17 C 0.52 17.34 8.70 180.62 1.57 18.91 14 18 O -0.46 -12.58 13.64 -87.63 -1.19 -13.78 14 19 N -0.54 -21.26 9.72 -302.92 -2.94 -24.21 14 20 H 0.29 13.80 8.31 -92.71 -0.77 13.03 14 21 H 0.40 21.45 7.27 -92.71 -0.67 20.77 14 22 H 0.17 5.49 7.72 -2.91 -0.02 5.47 14 23 H 0.43 4.02 9.06 -74.05 -0.67 3.35 14 24 H 0.43 7.02 9.06 -74.06 -0.67 6.35 14 Total: -1.00 -69.20 237.08 -5.19 -74.39 By element: Atomic # 1 Polarization: 26.77 SS G_CDS: -0.71 Total: 26.06 kcal Atomic # 6 Polarization: 33.28 SS G_CDS: 4.70 Total: 37.98 kcal Atomic # 7 Polarization: -112.88 SS G_CDS: -8.76 Total: -121.64 kcal Atomic # 8 Polarization: -56.44 SS G_CDS: -2.45 Total: -58.89 kcal Atomic # 14 Polarization: 40.07 SS G_CDS: 2.03 Total: 42.10 kcal Total: -69.20 -5.19 -74.39 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000606267358.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.739 kcal (2) G-P(sol) polarization free energy of solvation -69.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds