Wall clock time and date at job start Mon Mar 30 2020 03:25:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31020 * 1 3 3 Si 1.86801 * 119.99534 * 2 1 4 4 H 1.48503 * 109.47006 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47362 * 300.00108 * 3 2 1 6 6 H 1.48500 * 109.47253 * 60.00287 * 3 2 1 7 7 C 1.39583 * 120.00521 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00097 * 180.02562 * 7 2 1 9 9 N 1.36120 * 119.99568 * 359.97438 * 7 2 1 10 10 C 1.34776 * 120.00038 * 180.02562 * 9 7 2 11 11 O 1.21516 * 120.00132 * 359.97438 * 10 9 7 12 12 C 1.48725 * 120.00184 * 180.02562 * 10 9 7 13 13 O 1.21467 * 120.00390 * 359.97438 * 12 10 9 14 14 N 1.34784 * 119.99961 * 180.02562 * 12 10 9 15 15 C 1.39661 * 119.99791 * 179.97438 * 14 12 10 16 16 N 1.33667 * 125.60436 * 179.97438 * 15 14 12 17 17 C 1.30838 * 109.77843 * 179.97438 * 16 15 14 18 18 N 1.34404 * 108.21735 * 359.97438 * 17 16 15 19 19 H 0.96992 * 126.76734 * 179.73886 * 18 17 16 20 20 N 1.31217 * 125.61005 * 359.97333 * 15 14 12 21 21 H 0.97001 * 120.00119 * 0.02562 * 1 2 3 22 22 H 0.97000 * 120.00176 * 0.02562 * 9 7 2 23 23 H 0.97000 * 120.00008 * 359.97438 * 14 12 10 24 24 H 1.07998 * 125.89287 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3102 0.0000 0.0000 3 14 2.2441 1.6178 0.0000 4 1 3.7041 1.3466 -0.0006 5 1 1.8853 2.3965 -1.2124 6 1 1.8853 2.3965 1.2125 7 6 2.0082 -1.2088 -0.0005 8 1 3.0882 -1.2087 -0.0001 9 7 1.3276 -2.3876 -0.0005 10 6 2.0015 -3.5548 -0.0005 11 8 3.2167 -3.5548 -0.0010 12 6 1.2580 -4.8428 -0.0011 13 8 0.0433 -4.8429 -0.0011 14 7 1.9319 -6.0100 -0.0006 15 6 1.2336 -7.2196 -0.0006 16 7 1.7858 -8.4369 -0.0006 17 6 0.8474 -9.3486 0.0000 18 7 -0.3437 -8.7258 0.0009 19 1 -1.2182 -9.1452 -0.0021 20 7 -0.0722 -7.3478 -0.0006 21 1 -0.4850 0.8400 -0.0004 22 1 0.3576 -2.3876 -0.0005 23 1 2.9019 -6.0100 -0.0002 24 1 1.0029 -10.4173 -0.0003 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000606267407.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:25:30 Heat of formation + Delta-G solvation = 32.181748 kcal Electronic energy + Delta-G solvation = -14600.169479 eV Core-core repulsion = 11744.393475 eV Total energy + Delta-G solvation = -2855.776004 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 225.065 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -42.05675 -39.56054 -37.31826 -34.94490 -34.05003 -32.05722 -31.47495 -30.41780 -26.15196 -24.17729 -22.72931 -20.91171 -19.43676 -18.63716 -18.32268 -17.01509 -16.25610 -15.78446 -15.31837 -14.70253 -14.55803 -14.47190 -13.90291 -12.94403 -12.77472 -11.98957 -11.83264 -11.27205 -11.06323 -10.62102 -10.46448 -10.43610 -10.00512 -9.97462 -9.79643 -8.61361 -8.41882 -8.30538 -6.74607 -4.05933 1.62934 2.18861 2.43254 3.03028 3.06769 3.16113 3.22720 3.24059 3.98340 4.21986 4.45722 4.66358 5.03202 5.11532 5.67374 5.93591 6.21548 6.79646 6.96145 7.24371 7.32341 7.69540 8.13128 8.30423 8.47226 8.86978 9.21370 9.74904 10.39803 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.080712 B = 0.005656 C = 0.005295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 346.828385 B = 4949.696076 C = 5286.683382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.863 5.863 2 C 0.031 3.969 3 Si 0.941 3.059 4 H -0.262 1.262 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.303 4.303 8 H 0.116 0.884 9 N -0.491 5.491 10 C 0.397 3.603 11 O -0.593 6.593 12 C 0.511 3.489 13 O -0.495 6.495 14 N -0.610 5.610 15 C 0.448 3.552 16 N -0.558 5.558 17 C 0.273 3.727 18 N -0.488 5.488 19 H 0.442 0.558 20 N -0.291 5.291 21 H 0.282 0.718 22 H 0.406 0.594 23 H 0.434 0.566 24 H 0.225 0.775 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.853 -13.533 -0.003 13.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.501 5.501 2 C -0.176 4.176 3 Si 0.766 3.234 4 H -0.186 1.186 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.434 4.434 8 H 0.134 0.866 9 N -0.125 5.125 10 C 0.181 3.819 11 O -0.482 6.482 12 C 0.295 3.705 13 O -0.364 6.364 14 N -0.265 5.265 15 C 0.078 3.922 16 N -0.291 5.291 17 C -0.027 4.027 18 N -0.208 5.208 19 H 0.287 0.713 20 N -0.129 5.129 21 H 0.092 0.908 22 H 0.241 0.759 23 H 0.274 0.726 24 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -1.176 -12.684 -0.001 12.738 hybrid contribution -0.314 0.084 -0.002 0.325 sum -1.490 -12.599 -0.003 12.687 Atomic orbital electron populations 1.69495 1.06609 1.29536 1.44455 1.25648 0.95665 1.00659 0.95649 0.85620 0.79918 0.79686 0.78132 1.18555 1.20198 1.20194 1.19999 0.94166 0.81615 1.47573 0.86587 1.41549 1.10594 1.04082 1.56295 1.18456 0.87635 0.83469 0.92353 1.90615 1.12494 1.86170 1.58882 1.21087 0.87850 0.85078 0.76456 1.90802 1.13520 1.86861 1.45233 1.42477 1.11492 1.00088 1.72466 1.20576 0.87271 0.86854 0.97450 1.70228 1.33455 0.97427 1.28036 1.25878 0.81019 1.00050 0.95710 1.48133 1.09774 1.04992 1.57902 0.71261 1.78886 1.13055 0.90696 1.30222 0.90766 0.75875 0.72625 0.75895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -22.80 13.03 55.53 0.72 -22.07 14 2 C 0.03 0.80 5.51 -17.40 -0.10 0.71 14 3 Si 0.94 19.71 29.56 -169.99 -5.02 14.68 14 4 H -0.26 -5.44 7.11 56.52 0.40 -5.03 14 5 H -0.28 -5.68 7.11 56.52 0.40 -5.28 14 6 H -0.28 -5.68 7.11 56.52 0.40 -5.28 14 7 C -0.30 -8.22 9.67 -15.15 -0.15 -8.37 14 8 H 0.12 3.20 7.15 -52.49 -0.38 2.83 14 9 N -0.49 -13.03 5.25 -11.62 -0.06 -13.09 14 10 C 0.40 10.01 7.81 -11.93 -0.09 9.92 14 11 O -0.59 -15.79 16.03 5.35 0.09 -15.71 14 12 C 0.51 11.63 7.83 -11.92 -0.09 11.54 14 13 O -0.50 -12.11 15.15 5.39 0.08 -12.03 14 14 N -0.61 -11.92 5.42 -13.45 -0.07 -11.99 14 15 C 0.45 8.19 8.82 -321.05 -2.83 5.36 14 16 N -0.56 -8.32 11.21 -14.96 -0.17 -8.49 14 17 C 0.27 2.70 13.12 -90.67 -1.19 1.51 14 18 N -0.49 -5.47 7.44 29.52 0.22 -5.25 14 19 H 0.44 3.02 8.96 -182.35 -1.63 1.38 14 20 N -0.29 -5.25 10.97 30.01 0.33 -4.93 14 21 H 0.28 6.86 8.30 -40.82 -0.34 6.52 14 22 H 0.41 10.83 7.35 -40.82 -0.30 10.53 14 23 H 0.43 7.79 8.28 -40.82 -0.34 7.45 14 24 H 0.22 0.78 8.06 -52.49 -0.42 0.36 14 LS Contribution 236.23 15.07 3.56 3.56 Total: -1.00 -34.19 236.23 -6.98 -41.17 By element: Atomic # 1 Polarization: 15.68 SS G_CDS: -2.20 Total: 13.47 kcal Atomic # 6 Polarization: 25.12 SS G_CDS: -4.45 Total: 20.67 kcal Atomic # 7 Polarization: -66.79 SS G_CDS: 0.97 Total: -65.82 kcal Atomic # 8 Polarization: -27.91 SS G_CDS: 0.17 Total: -27.74 kcal Atomic # 14 Polarization: 19.71 SS G_CDS: -5.02 Total: 14.68 kcal Total LS contribution 3.56 Total: 3.56 kcal Total: -34.19 -6.98 -41.17 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000606267407.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.355 kcal (2) G-P(sol) polarization free energy of solvation -34.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.173 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds