Wall clock time and date at job start Mon Mar 30 2020 02:41:48
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.30872 * 1
3 3 Si 1.86801 * 119.99898 * 2 1
4 4 H 1.48501 * 109.46899 * 269.99477 * 3 2 1
5 5 H 1.48499 * 109.47089 * 29.99509 * 3 2 1
6 6 H 1.48503 * 109.47296 * 149.99597 * 3 2 1
7 7 C 1.39900 * 119.99905 * 179.97438 * 2 1 3
8 8 H 1.08006 * 119.99520 * 175.54210 * 7 2 1
9 9 C 1.41150 * 120.00440 * 355.55402 * 7 2 1
10 10 C 1.40875 * 120.16156 * 35.02882 * 9 7 2
11 11 C 1.36371 * 119.82380 * 180.27815 * 10 9 7
12 12 C 1.39485 * 120.17346 * 359.45309 * 11 10 9
13 13 N 1.39242 * 119.83838 * 180.27754 * 12 11 10
14 14 C 1.34780 * 119.99631 * 324.71518 * 13 12 11
15 15 O 1.21337 * 120.00324 * 4.29373 * 14 13 12
16 16 Cl 1.73606 * 119.99669 * 184.28716 * 14 13 12
17 17 C 1.39483 * 120.32902 * 0.26131 * 12 11 10
18 18 C 1.36370 * 120.16863 * 0.02562 * 17 12 11
19 19 H 0.96995 * 120.00274 * 0.02562 * 1 2 3
20 20 H 1.07994 * 120.08876 * 0.02562 * 10 9 7
21 21 H 1.08002 * 119.91666 * 179.73856 * 11 10 9
22 22 H 0.96995 * 120.00271 * 144.71112 * 13 12 11
23 23 H 1.07997 * 119.91202 * 180.02562 * 17 12 11
24 24 H 1.08006 * 120.08384 * 180.02562 * 18 17 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3087 0.0000 0.0000
3 14 2.2427 1.6178 0.0000
4 1 2.4903 2.0463 -1.4001
5 1 1.4401 2.6527 0.6999
6 1 3.5402 1.4403 0.7001
7 6 2.0082 -1.2116 0.0005
8 1 3.0858 -1.2130 -0.0722
9 6 1.3057 -2.4321 0.0958
10 6 0.0440 -2.5722 -0.5149
11 6 -0.6312 -3.7527 -0.4137
12 6 -0.0707 -4.8235 0.2826
13 7 -0.7637 -6.0275 0.3767
14 6 -2.1077 -6.0253 0.4779
15 8 -2.7197 -4.9798 0.4087
16 17 -2.9634 -7.5184 0.7070
17 6 1.1807 -4.6942 0.8849
18 6 1.8653 -3.5181 0.7972
19 1 -0.4850 0.8400 -0.0004
20 1 -0.3892 -1.7456 -1.0584
21 1 -1.6005 -3.8603 -0.8778
22 1 -0.2793 -6.8678 0.3694
23 1 1.6085 -5.5278 1.4220
24 1 2.8344 -3.4197 1.2637
RHF calculation, no. of doubly occupied orbitals= 37
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000606268601.mol2 24
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:41:48
Heat of formation + Delta-G solvation = -24.745553 kcal
Electronic energy + Delta-G solvation = -12662.370159 eV
Core-core repulsion = 10180.249264 eV
Total energy + Delta-G solvation = -2482.120895 eV
No. of doubly occupied orbitals = 37
Molecular weight
(most abundant/longest-lived isotopes) = 225.030 amu
Computer time = 0.21 seconds
Orbital eigenvalues (eV)
-39.69668 -37.44250 -36.19065 -34.76552 -33.07062 -29.68807 -29.14342 -25.35673
-22.35678 -21.41418 -20.19758 -18.03319 -17.41666 -16.58826 -15.38923 -15.04470
-14.47522 -14.06034 -13.26596 -12.81678 -12.26984 -11.96909 -11.72591 -11.37493
-11.27220 -11.17156 -10.99154 -10.64944 -10.25039 -10.09714 -9.83743 -9.21210
-9.02638 -7.68700 -7.09580 -6.71470 -4.46395 1.56267 2.26207 2.83809
2.95263 3.05306 3.08177 3.18910 3.90564 4.19737 4.59978 5.51531
5.99058 6.21275 6.43988 6.71359 6.89957 7.02957 7.12715 7.39762
7.49560 7.69385 7.87660 7.96047 8.17648 8.25328 8.54010 8.80517
8.85063 10.19195
Molecular weight = 225.03amu
Principal moments of inertia in cm(-1)
A = 0.066830 B = 0.006225 C = 0.005789
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 418.873940 B = 4497.259033 C = 4835.898491
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.802 5.802
2 C 0.068 3.932
3 Si 0.918 3.082
4 H -0.269 1.269
5 H -0.277 1.277
6 H -0.262 1.262
7 C -0.458 4.458
8 H 0.078 0.922
9 C 0.105 3.895
10 C -0.144 4.144
11 C -0.091 4.091
12 C -0.013 4.013
13 N -0.621 5.621
14 C 0.550 3.450
15 O -0.478 6.478
16 Cl -0.122 7.122
17 C -0.100 4.100
18 C -0.204 4.204
19 H 0.281 0.719
20 H 0.133 0.867
21 H 0.108 0.892
22 H 0.405 0.595
23 H 0.095 0.905
24 H 0.101 0.899
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.001 -7.972 0.180 7.974
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.429 5.429
2 C -0.148 4.148
3 Si 0.743 3.257
4 H -0.194 1.194
5 H -0.202 1.202
6 H -0.186 1.186
7 C -0.488 4.488
8 H 0.097 0.903
9 C 0.102 3.898
10 C -0.164 4.164
11 C -0.111 4.111
12 C -0.104 4.104
13 N -0.268 5.268
14 C 0.306 3.694
15 O -0.353 6.353
16 Cl -0.097 7.097
17 C -0.120 4.120
18 C -0.224 4.224
19 H 0.092 0.908
20 H 0.151 0.849
21 H 0.125 0.875
22 H 0.240 0.760
23 H 0.113 0.887
24 H 0.119 0.881
Dipole moment (debyes) X Y Z Total
from point charges -0.726 -7.167 0.166 7.206
hybrid contribution 0.413 0.125 0.190 0.472
sum -0.312 -7.043 0.357 7.059
Atomic orbital electron populations
1.69773 1.07357 1.29137 1.36590 1.25951 0.94982 1.01425 0.92478
0.86147 0.80166 0.80237 0.79170 1.19400 1.20189 1.18642 1.19538
0.94840 0.90163 1.44248 0.90346 1.17785 0.92131 0.91910 0.87960
1.21294 0.97046 0.95951 1.02125 1.20630 0.99031 0.93301 0.98154
1.17222 0.95299 0.86322 1.11548 1.42733 1.03362 1.09837 1.70823
1.21556 0.83548 0.84795 0.79455 1.90879 1.66038 1.27253 1.51127
1.98497 1.76965 1.39684 1.94592 1.20062 0.94397 0.97632 0.99889
1.20714 1.01299 0.94423 1.05975 0.90806 0.84943 0.87453 0.75980
0.88688 0.88108
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.80 -20.76 10.61 55.55 0.59 -20.17 14
2 C 0.07 1.68 5.42 -17.34 -0.09 1.59 14
3 Si 0.92 18.46 29.56 -169.99 -5.03 13.44 14
4 H -0.27 -5.30 7.11 56.52 0.40 -4.90 14
5 H -0.28 -5.51 7.11 56.52 0.40 -5.10 14
6 H -0.26 -5.19 7.11 56.52 0.40 -4.79 14
7 C -0.46 -11.75 9.02 -37.86 -0.34 -12.10 14
8 H 0.08 1.91 7.85 -52.48 -0.41 1.50 14
9 C 0.10 2.71 5.55 -106.80 -0.59 2.11 14
10 C -0.14 -3.74 8.61 -39.26 -0.34 -4.07 14
11 C -0.09 -2.20 8.61 -39.79 -0.34 -2.54 14
12 C -0.01 -0.27 6.31 -83.57 -0.53 -0.79 14
13 N -0.62 -10.69 5.31 -10.69 -0.06 -10.75 14
14 C 0.55 9.92 8.33 54.06 0.45 10.37 14
15 O -0.48 -10.61 14.58 5.51 0.08 -10.53 14
16 Cl -0.12 -1.71 29.27 -51.86 -1.52 -3.22 14
17 C -0.10 -2.07 9.90 -39.79 -0.39 -2.46 14
18 C -0.20 -4.71 9.74 -39.26 -0.38 -5.09 14
19 H 0.28 6.66 8.30 -40.82 -0.34 6.33 14
20 H 0.13 3.59 6.15 -52.49 -0.32 3.27 14
21 H 0.11 2.59 6.22 -52.49 -0.33 2.26 14
22 H 0.40 5.34 8.88 -40.82 -0.36 4.98 14
23 H 0.10 1.64 8.06 -52.49 -0.42 1.21 14
24 H 0.10 2.14 8.06 -52.48 -0.42 1.72 14
LS Contribution 235.65 15.07 3.55 3.55
Total: -1.00 -27.85 235.65 -6.34 -34.20
By element:
Atomic # 1 Polarization: 7.87 SS G_CDS: -1.40 Total: 6.46 kcal
Atomic # 6 Polarization: -10.42 SS G_CDS: -2.56 Total: -12.98 kcal
Atomic # 7 Polarization: -31.45 SS G_CDS: 0.53 Total: -30.91 kcal
Atomic # 8 Polarization: -10.61 SS G_CDS: 0.08 Total: -10.53 kcal
Atomic # 14 Polarization: 18.46 SS G_CDS: -5.03 Total: 13.44 kcal
Atomic # 17 Polarization: -1.71 SS G_CDS: -1.52 Total: -3.22 kcal
Total LS contribution 3.55 Total: 3.55 kcal
Total: -27.85 -6.34 -34.20 kcal
The number of atoms in the molecule is 24
The average number of expansion shells was 14.00
The maximum number of expansion shells was 14
The minimum number of expansion shells was 14
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000606268601.mol2 24
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 9.449 kcal
(2) G-P(sol) polarization free energy of solvation -27.851 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.401 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.344 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.195 kcal
(6) G-S(sol) free energy of system = (1) + (5) -24.746 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.21 seconds