Wall clock time and date at job start Mon Mar 30 2020 02:41:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30872 * 1 3 3 Si 1.86801 * 119.99898 * 2 1 4 4 H 1.48501 * 109.46899 * 269.99477 * 3 2 1 5 5 H 1.48499 * 109.47089 * 29.99509 * 3 2 1 6 6 H 1.48503 * 109.47296 * 149.99597 * 3 2 1 7 7 C 1.39900 * 119.99905 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99520 * 175.54210 * 7 2 1 9 9 C 1.41150 * 120.00440 * 355.55402 * 7 2 1 10 10 C 1.40875 * 120.16156 * 35.02882 * 9 7 2 11 11 C 1.36371 * 119.82380 * 180.27815 * 10 9 7 12 12 C 1.39485 * 120.17346 * 359.45309 * 11 10 9 13 13 N 1.39242 * 119.83838 * 180.27754 * 12 11 10 14 14 C 1.34780 * 119.99631 * 324.71518 * 13 12 11 15 15 O 1.21337 * 120.00324 * 4.29373 * 14 13 12 16 16 Cl 1.73606 * 119.99669 * 184.28716 * 14 13 12 17 17 C 1.39483 * 120.32902 * 0.26131 * 12 11 10 18 18 C 1.36370 * 120.16863 * 0.02562 * 17 12 11 19 19 H 0.96995 * 120.00274 * 0.02562 * 1 2 3 20 20 H 1.07994 * 120.08876 * 0.02562 * 10 9 7 21 21 H 1.08002 * 119.91666 * 179.73856 * 11 10 9 22 22 H 0.96995 * 120.00271 * 144.71112 * 13 12 11 23 23 H 1.07997 * 119.91202 * 180.02562 * 17 12 11 24 24 H 1.08006 * 120.08384 * 180.02562 * 18 17 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2427 1.6178 0.0000 4 1 2.4903 2.0463 -1.4001 5 1 1.4401 2.6527 0.6999 6 1 3.5402 1.4403 0.7001 7 6 2.0082 -1.2116 0.0005 8 1 3.0858 -1.2130 -0.0722 9 6 1.3057 -2.4321 0.0958 10 6 0.0440 -2.5722 -0.5149 11 6 -0.6312 -3.7527 -0.4137 12 6 -0.0707 -4.8235 0.2826 13 7 -0.7637 -6.0275 0.3767 14 6 -2.1077 -6.0253 0.4779 15 8 -2.7197 -4.9798 0.4087 16 17 -2.9634 -7.5184 0.7070 17 6 1.1807 -4.6942 0.8849 18 6 1.8653 -3.5181 0.7972 19 1 -0.4850 0.8400 -0.0004 20 1 -0.3892 -1.7456 -1.0584 21 1 -1.6005 -3.8603 -0.8778 22 1 -0.2793 -6.8678 0.3694 23 1 1.6085 -5.5278 1.4220 24 1 2.8344 -3.4197 1.2637 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000606268601.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:48 Heat of formation + Delta-G solvation = -42.109177 kcal Electronic energy + Delta-G solvation = -12663.123102 eV Core-core repulsion = 10180.249264 eV Total energy + Delta-G solvation = -2482.873838 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 225.030 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.27828 -39.16946 -37.56873 -36.44361 -34.82754 -31.52036 -30.93717 -27.15255 -24.01979 -23.20059 -21.89127 -19.57555 -19.25716 -18.20059 -17.14642 -16.60739 -16.02654 -15.79838 -15.02278 -14.55446 -14.04059 -13.75608 -13.45567 -12.92429 -12.79703 -12.54965 -12.45468 -12.36677 -11.95126 -11.79373 -11.53380 -11.01484 -10.75469 -9.52225 -8.89351 -8.53617 -6.37749 0.12421 0.63522 1.08856 1.27326 1.40737 1.52915 1.58566 2.23075 2.76812 2.79726 3.63943 4.38402 4.40978 4.79735 5.00818 5.08139 5.24266 5.31629 5.64196 5.71736 5.92156 6.09266 6.20382 6.33348 6.64615 6.79047 6.92540 7.00996 8.39061 Molecular weight = 225.03amu Principal moments of inertia in cm(-1) A = 0.066830 B = 0.006225 C = 0.005789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 418.873940 B = 4497.259033 C = 4835.898491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.842 5.842 2 C 0.022 3.978 3 Si 0.992 3.008 4 H -0.262 1.262 5 H -0.274 1.274 6 H -0.254 1.254 7 C -0.490 4.490 8 H 0.083 0.917 9 C 0.072 3.928 10 C -0.169 4.169 11 C -0.105 4.105 12 C 0.002 3.998 13 N -0.609 5.609 14 C 0.550 3.450 15 O -0.525 6.525 16 Cl -0.070 7.070 17 C -0.091 4.091 18 C -0.209 4.209 19 H 0.284 0.716 20 H 0.107 0.893 21 H 0.099 0.901 22 H 0.428 0.572 23 H 0.143 0.857 24 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.851 -9.620 1.025 9.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.470 5.470 2 C -0.190 4.190 3 Si 0.813 3.187 4 H -0.187 1.187 5 H -0.198 1.198 6 H -0.178 1.178 7 C -0.520 4.520 8 H 0.102 0.898 9 C 0.069 3.931 10 C -0.189 4.189 11 C -0.125 4.125 12 C -0.091 4.091 13 N -0.258 5.258 14 C 0.309 3.691 15 O -0.403 6.403 16 Cl -0.045 7.045 17 C -0.111 4.111 18 C -0.229 4.229 19 H 0.095 0.905 20 H 0.125 0.875 21 H 0.117 0.883 22 H 0.268 0.732 23 H 0.160 0.840 24 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 0.139 -8.890 1.012 8.949 hybrid contribution 0.031 0.353 -0.051 0.358 sum 0.170 -8.537 0.961 8.592 Atomic orbital electron populations 1.69889 1.08978 1.30096 1.38014 1.26885 0.95696 1.04867 0.91536 0.85044 0.78819 0.75472 0.79390 1.18698 1.19842 1.17794 1.19825 0.95227 0.91023 1.45967 0.89839 1.18134 0.92504 0.93315 0.89137 1.21161 0.98044 0.96207 1.03489 1.20664 0.98816 0.93948 0.99074 1.17252 0.95492 0.86840 1.09473 1.42548 1.03374 1.09528 1.70309 1.21740 0.83527 0.85550 0.78276 1.90880 1.67179 1.29738 1.52544 1.98506 1.75848 1.35965 1.94218 1.20439 0.93557 0.98218 0.98883 1.20990 1.02096 0.94450 1.05346 0.90544 0.87467 0.88284 0.73219 0.83962 0.86364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -45.45 10.61 21.82 0.23 -45.22 14 2 C 0.02 1.13 5.42 85.24 0.46 1.59 14 3 Si 0.99 38.32 29.56 68.60 2.03 40.35 14 4 H -0.26 -9.75 7.11 99.48 0.71 -9.04 14 5 H -0.27 -10.29 7.11 99.48 0.71 -9.59 14 6 H -0.25 -9.38 7.11 99.48 0.71 -8.68 14 7 C -0.49 -25.77 9.02 23.39 0.21 -25.56 14 8 H 0.08 4.12 7.85 -2.91 -0.02 4.10 14 9 C 0.07 3.77 5.55 -21.27 -0.12 3.66 14 10 C -0.17 -9.12 8.61 22.48 0.19 -8.93 14 11 C -0.11 -5.15 8.61 22.13 0.19 -4.96 14 12 C 0.00 0.08 6.31 38.57 0.24 0.33 14 13 N -0.61 -19.30 5.31 -306.10 -1.63 -20.93 14 14 C 0.55 18.78 8.33 129.79 1.08 19.86 14 15 O -0.53 -23.11 14.58 -3.21 -0.05 -23.16 14 16 Cl -0.07 -1.76 29.27 -2.72 -0.08 -1.84 14 17 C -0.09 -3.53 9.90 22.13 0.22 -3.31 14 18 C -0.21 -9.39 9.74 22.48 0.22 -9.18 14 19 H 0.28 14.05 8.30 -92.71 -0.77 13.28 14 20 H 0.11 6.23 6.15 -2.91 -0.02 6.21 14 21 H 0.10 4.95 6.22 -2.91 -0.02 4.93 14 22 H 0.43 9.56 8.88 -92.71 -0.82 8.73 14 23 H 0.14 4.16 8.06 -2.91 -0.02 4.14 14 24 H 0.12 4.81 8.06 -2.91 -0.02 4.78 14 Total: -1.00 -62.05 235.65 3.63 -58.42 By element: Atomic # 1 Polarization: 18.45 SS G_CDS: 0.42 Total: 18.87 kcal Atomic # 6 Polarization: -29.21 SS G_CDS: 2.70 Total: -26.51 kcal Atomic # 7 Polarization: -64.75 SS G_CDS: -1.39 Total: -66.14 kcal Atomic # 8 Polarization: -23.11 SS G_CDS: -0.05 Total: -23.16 kcal Atomic # 14 Polarization: 38.32 SS G_CDS: 2.03 Total: 40.35 kcal Atomic # 17 Polarization: -1.76 SS G_CDS: -0.08 Total: -1.84 kcal Total: -62.05 3.63 -58.42 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000606268601.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.310 kcal (2) G-P(sol) polarization free energy of solvation -62.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds