Wall clock time and date at job start Mon Mar 30 2020 02:43:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30832 * 1 3 3 Si 1.86800 * 119.99993 * 2 1 4 4 H 1.48500 * 109.47044 * 272.65695 * 3 2 1 5 5 H 1.48501 * 109.46758 * 32.65276 * 3 2 1 6 6 H 1.48494 * 109.47178 * 152.65035 * 3 2 1 7 7 C 1.39930 * 119.99986 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00134 * 347.81658 * 7 2 1 9 9 C 1.41402 * 119.99969 * 167.82258 * 7 2 1 10 10 C 1.40785 * 120.21201 * 149.05446 * 9 7 2 11 11 C 1.37643 * 119.88281 * 180.27185 * 10 9 7 12 12 C 1.38532 * 120.32345 * 359.44766 * 11 10 9 13 13 C 1.39245 * 120.42775 * 0.28394 * 12 11 10 14 14 N 1.39949 * 119.94646 * 180.02562 * 13 12 11 15 15 C 1.34781 * 119.99903 * 144.57064 * 14 13 12 16 16 O 1.21341 * 119.99810 * 4.68783 * 15 14 13 17 17 Cl 1.73591 * 119.99906 * 184.69087 * 15 14 13 18 18 C 1.38282 * 120.10509 * 359.97438 * 13 12 11 19 19 H 0.97004 * 119.99955 * 0.02562 * 1 2 3 20 20 H 1.08002 * 120.05501 * 359.97438 * 10 9 7 21 21 H 1.08002 * 119.83716 * 179.73444 * 11 10 9 22 22 H 1.07996 * 119.78269 * 180.25213 * 12 11 10 23 23 H 0.96997 * 120.00170 * 324.56669 * 14 13 12 24 24 H 1.08001 * 120.15979 * 179.97438 * 18 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.4336 2.0789 -1.3986 5 1 1.4689 2.6358 0.7554 6 1 3.5667 1.4247 0.6432 7 6 2.0080 -1.2118 -0.0005 8 1 1.4862 -2.1367 0.1964 9 6 3.3981 -1.2255 -0.2589 10 6 4.2191 -2.2042 0.3329 11 6 5.5723 -2.2078 0.0812 12 6 6.1296 -1.2596 -0.7611 13 6 5.3291 -0.2889 -1.3578 14 7 5.9026 0.6639 -2.2074 15 6 5.2206 1.1051 -3.2829 16 8 4.0779 0.7412 -3.4679 17 17 5.9770 2.1939 -4.4035 18 6 3.9683 -0.2656 -1.1131 19 1 -0.4850 0.8401 -0.0004 20 1 3.7885 -2.9480 0.9870 21 1 6.2020 -2.9564 0.5389 22 1 7.1918 -1.2730 -0.9557 23 1 6.7909 1.0068 -2.0222 24 1 3.3467 0.4871 -1.5751 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000606268704.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:59 Heat of formation + Delta-G solvation = -43.297477 kcal Electronic energy + Delta-G solvation = -13037.890617 eV Core-core repulsion = 10554.965250 eV Total energy + Delta-G solvation = -2482.925367 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 225.030 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.49410 -39.29967 -37.71040 -36.44606 -35.23213 -32.29894 -30.57331 -27.19773 -24.73690 -23.16804 -21.92879 -20.16516 -18.97909 -18.17739 -17.39800 -16.82958 -16.40173 -15.97587 -15.47341 -14.82432 -14.44602 -14.04190 -13.53376 -12.86720 -12.79120 -12.72262 -12.57448 -12.48334 -12.07710 -11.88573 -11.63690 -11.20426 -10.95025 -9.53124 -9.11041 -8.92590 -6.57146 -0.05717 0.45074 0.77876 1.11337 1.19460 1.35149 1.36515 2.04665 2.53227 2.58667 3.44550 4.29521 4.46473 4.57589 4.71572 4.87828 4.88528 5.24760 5.48306 5.52719 5.79711 5.83488 6.04409 6.20659 6.26865 6.61174 6.70872 6.79187 8.15763 Molecular weight = 225.03amu Principal moments of inertia in cm(-1) A = 0.025513 B = 0.012111 C = 0.008991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1097.204992 B = 2311.439713 C = 3113.636076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.854 5.854 2 C 0.047 3.953 3 Si 0.959 3.041 4 H -0.279 1.279 5 H -0.275 1.275 6 H -0.242 1.242 7 C -0.481 4.481 8 H 0.063 0.937 9 C 0.078 3.922 10 C -0.219 4.219 11 C -0.064 4.064 12 C -0.222 4.222 13 C 0.155 3.845 14 N -0.630 5.630 15 C 0.552 3.448 16 O -0.513 6.513 17 Cl -0.059 7.059 18 C -0.256 4.256 19 H 0.292 0.708 20 H 0.110 0.890 21 H 0.150 0.850 22 H 0.152 0.848 23 H 0.435 0.565 24 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.114 4.154 -2.957 15.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.481 5.481 2 C -0.167 4.167 3 Si 0.785 3.215 4 H -0.206 1.206 5 H -0.202 1.202 6 H -0.165 1.165 7 C -0.511 4.511 8 H 0.081 0.919 9 C 0.075 3.925 10 C -0.239 4.239 11 C -0.082 4.082 12 C -0.243 4.243 13 C 0.062 3.938 14 N -0.280 5.280 15 C 0.311 3.689 16 O -0.389 6.389 17 Cl -0.034 7.034 18 C -0.277 4.277 19 H 0.102 0.898 20 H 0.128 0.872 21 H 0.168 0.832 22 H 0.169 0.831 23 H 0.276 0.724 24 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 14.110 4.101 -3.204 15.039 hybrid contribution -0.152 0.851 -0.180 0.883 sum 13.958 4.952 -3.384 15.192 Atomic orbital electron populations 1.69682 1.08840 1.31106 1.38502 1.26722 0.95438 1.03906 0.90646 0.85592 0.80153 0.77373 0.78422 1.20614 1.20214 1.16489 1.19510 0.92656 0.94916 1.44033 0.91913 1.17795 0.93088 0.92094 0.89565 1.21376 0.94334 1.03056 1.05143 1.20978 0.93957 0.97338 0.95941 1.20709 0.99998 0.97432 1.06143 1.17578 0.92150 0.90976 0.93063 1.43053 1.21103 1.41173 1.22678 1.21820 0.85399 0.80208 0.81507 1.90963 1.17942 1.56501 1.73497 1.98515 1.82815 1.62405 1.59652 1.21211 0.95086 1.05775 1.05619 0.89810 0.87169 0.83202 0.83086 0.72398 0.87969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -49.65 13.93 21.82 0.30 -49.35 14 2 C 0.05 2.65 5.47 85.25 0.47 3.12 14 3 Si 0.96 46.47 24.40 68.60 1.67 48.15 14 4 H -0.28 -14.00 6.67 99.48 0.66 -13.33 14 5 H -0.28 -12.33 7.11 99.48 0.71 -11.62 14 6 H -0.24 -11.33 6.66 99.48 0.66 -10.67 14 7 C -0.48 -27.99 9.60 23.46 0.23 -27.77 14 8 H 0.06 3.86 8.06 -2.91 -0.02 3.84 14 9 C 0.08 4.02 5.13 -21.31 -0.11 3.91 14 10 C -0.22 -9.57 9.79 22.75 0.22 -9.34 14 11 C -0.06 -2.19 10.02 22.20 0.22 -1.97 14 12 C -0.22 -7.28 9.97 22.58 0.23 -7.05 14 13 C 0.15 6.05 6.29 38.10 0.24 6.29 14 14 N -0.63 -19.56 5.34 -306.65 -1.64 -21.20 14 15 C 0.55 19.25 8.34 129.79 1.08 20.33 14 16 O -0.51 -23.63 14.61 -3.22 -0.05 -23.67 14 17 Cl -0.06 -1.49 29.27 -2.72 -0.08 -1.57 14 18 C -0.26 -12.62 5.63 22.85 0.13 -12.49 14 19 H 0.29 15.38 8.30 -92.71 -0.77 14.61 14 20 H 0.11 4.58 8.06 -2.91 -0.02 4.55 14 21 H 0.15 3.83 8.06 -2.91 -0.02 3.81 14 22 H 0.15 3.53 8.06 -2.91 -0.02 3.51 14 23 H 0.43 9.00 8.88 -92.71 -0.82 8.18 14 24 H 0.10 5.48 2.58 -2.91 -0.01 5.48 14 Total: -1.00 -67.51 230.21 3.26 -64.26 By element: Atomic # 1 Polarization: 8.01 SS G_CDS: 0.34 Total: 8.35 kcal Atomic # 6 Polarization: -27.67 SS G_CDS: 2.70 Total: -24.97 kcal Atomic # 7 Polarization: -69.21 SS G_CDS: -1.33 Total: -70.54 kcal Atomic # 8 Polarization: -23.63 SS G_CDS: -0.05 Total: -23.67 kcal Atomic # 14 Polarization: 46.47 SS G_CDS: 1.67 Total: 48.15 kcal Atomic # 17 Polarization: -1.49 SS G_CDS: -0.08 Total: -1.57 kcal Total: -67.51 3.26 -64.26 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000606268704.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.960 kcal (2) G-P(sol) polarization free energy of solvation -67.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds