Wall clock time and date at job start Mon Mar 30 2020 02:45:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38222 * 120.84870 * 2 1 4 4 C 1.38607 * 119.31475 * 179.77953 * 3 2 1 5 5 Cl 1.73593 * 119.46583 * 180.25879 * 4 3 2 6 6 N 1.32111 * 121.07495 * 0.51019 * 4 3 2 7 7 C 1.31630 * 121.86618 * 359.74234 * 6 4 3 8 8 C 1.39769 * 120.55556 * 0.02562 * 7 6 4 9 9 C 1.47771 * 120.55327 * 180.02562 * 8 7 6 10 10 O 1.21771 * 119.99719 * 174.12852 * 9 8 7 11 11 C 1.41818 * 120.00134 * 354.12542 * 9 8 7 12 12 H 1.07999 * 120.00178 * 359.97438 * 11 9 8 13 13 C 1.40346 * 119.99880 * 180.02562 * 11 9 8 14 14 N 1.30528 * 120.00063 * 359.97438 * 13 11 9 15 15 Si 1.86797 * 119.99815 * 179.97438 * 13 11 9 16 16 H 1.48500 * 109.46884 * 90.00157 * 15 13 11 17 17 H 1.48493 * 109.47215 * 210.00064 * 15 13 11 18 18 H 1.48503 * 109.47516 * 330.00395 * 15 13 11 19 19 H 1.08994 * 109.46917 * 263.16587 * 1 2 3 20 20 H 1.09008 * 109.46684 * 143.16808 * 1 2 3 21 21 H 1.08997 * 109.47718 * 23.17029 * 1 2 3 22 22 H 1.07997 * 120.34378 * 0.02562 * 3 2 1 23 23 H 1.07999 * 119.72509 * 179.97438 * 7 6 4 24 24 H 0.96993 * 120.00012 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2157 1.1867 0.0000 4 6 3.6013 1.1496 0.0047 5 17 4.4953 2.6376 0.0115 6 7 4.2527 0.0002 -0.0010 7 6 3.6227 -1.1555 -0.0062 8 6 2.2259 -1.2034 -0.0065 9 6 1.5188 -2.5010 -0.0117 10 8 0.3063 -2.5340 0.0960 11 6 2.2522 -3.7077 -0.1423 12 1 3.3275 -3.6784 -0.2383 13 6 1.5805 -4.9400 -0.1479 14 7 0.2808 -4.9754 -0.0324 15 14 2.5465 -6.5295 -0.3206 16 1 2.9282 -7.0255 1.0261 17 1 1.7076 -7.5469 -1.0033 18 1 3.7717 -6.2796 -1.1216 19 1 -0.3633 -0.1223 1.0203 20 1 -0.3633 -0.8226 -0.6161 21 1 -0.3634 0.9447 -0.4043 22 1 1.6953 2.1330 0.0004 23 1 4.1900 -2.0746 -0.0112 24 1 -0.1834 -5.8270 -0.0366 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000694948313.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:23 Heat of formation + Delta-G solvation = -41.237384 kcal Electronic energy + Delta-G solvation = -12798.341040 eV Core-core repulsion = 10315.505006 eV Total energy + Delta-G solvation = -2482.836034 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 225.030 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.30166 -38.66252 -37.56464 -35.15022 -34.37157 -32.34013 -29.54075 -28.14575 -25.21921 -23.36062 -21.68784 -18.83957 -17.86087 -17.46107 -17.33797 -15.98304 -15.73985 -15.32038 -14.82469 -14.33019 -13.80863 -13.74295 -13.62971 -13.05034 -12.91916 -12.75835 -12.52318 -12.48430 -12.28329 -12.03194 -10.99449 -10.69955 -10.51525 -9.83923 -9.50369 -8.35064 -7.09247 -0.26781 0.16637 0.74697 1.38767 1.41586 1.56855 2.13450 2.21251 2.70080 3.46750 3.62507 3.83696 3.92393 4.02667 4.23438 4.56355 4.74386 4.83468 4.89209 5.13586 5.18731 5.47984 5.63139 5.94225 6.65839 6.70127 6.71578 8.19127 8.44277 Molecular weight = 225.03amu Principal moments of inertia in cm(-1) A = 0.044208 B = 0.007548 C = 0.006474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 633.210358 B = 3708.517385 C = 4323.802967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.016 4.016 3 C -0.156 4.156 4 C 0.161 3.839 5 Cl -0.023 7.023 6 N -0.504 5.504 7 C 0.141 3.859 8 C -0.184 4.184 9 C 0.370 3.630 10 O -0.569 6.569 11 C -0.538 4.538 12 H 0.095 0.905 13 C 0.028 3.972 14 N -0.779 5.779 15 Si 0.990 3.010 16 H -0.260 1.260 17 H -0.270 1.270 18 H -0.248 1.248 19 H 0.069 0.931 20 H 0.071 0.929 21 H 0.089 0.911 22 H 0.174 0.826 23 H 0.179 0.821 24 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.964 7.610 -0.459 9.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.024 4.024 3 C -0.176 4.176 4 C -0.003 4.003 5 Cl 0.005 6.995 6 N -0.216 5.216 7 C -0.016 4.016 8 C -0.188 4.188 9 C 0.268 3.732 10 O -0.462 6.462 11 C -0.569 4.569 12 H 0.113 0.887 13 C -0.192 4.192 14 N -0.407 5.407 15 Si 0.809 3.191 16 H -0.184 1.184 17 H -0.194 1.194 18 H -0.171 1.171 19 H 0.088 0.912 20 H 0.089 0.911 21 H 0.108 0.892 22 H 0.191 0.809 23 H 0.196 0.804 24 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 5.208 7.718 -0.399 9.320 hybrid contribution -0.453 -0.619 -0.001 0.767 sum 4.754 7.099 -0.400 8.554 Atomic orbital electron populations 1.20855 0.88663 1.03273 1.03158 1.20833 0.98247 0.91414 0.91906 1.21853 0.92004 0.99908 1.03878 1.21959 0.89368 0.88702 1.00227 1.98364 1.76607 1.27996 1.96517 1.67000 1.41689 0.97878 1.15074 1.23148 0.91102 0.94761 0.92586 1.22634 0.96193 0.98283 1.01646 1.18478 0.88466 0.86896 0.79327 1.90425 1.16462 1.88499 1.50838 1.21447 0.96596 0.92264 1.46561 0.88718 1.27134 0.95655 1.04945 0.91445 1.70049 1.10659 1.29063 1.30970 0.85100 0.78963 0.75214 0.79783 1.18405 1.19412 1.17077 0.91229 0.91066 0.89236 0.80874 0.80434 0.90585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.85 8.84 71.23 0.63 -3.22 14 2 C -0.02 -0.63 5.95 -19.40 -0.12 -0.74 14 3 C -0.16 -5.02 9.54 22.35 0.21 -4.81 14 4 C 0.16 5.42 7.28 84.74 0.62 6.04 14 5 Cl -0.02 -0.63 29.10 -2.72 -0.08 -0.71 14 6 N -0.50 -19.09 10.32 -185.34 -1.91 -21.01 14 7 C 0.14 5.71 10.61 85.09 0.90 6.61 14 8 C -0.18 -8.34 5.90 -19.91 -0.12 -8.46 14 9 C 0.37 20.07 6.87 25.68 0.18 20.25 14 10 O -0.57 -34.22 12.05 -4.58 -0.06 -34.28 14 11 C -0.54 -28.13 8.86 23.67 0.21 -27.92 14 12 H 0.09 4.39 6.09 -2.91 -0.02 4.37 14 13 C 0.03 1.44 5.50 85.40 0.47 1.91 14 14 N -0.78 -43.27 11.73 21.89 0.26 -43.02 14 15 Si 0.99 37.26 29.56 68.60 2.03 39.29 14 16 H -0.26 -9.37 7.11 99.48 0.71 -8.67 14 17 H -0.27 -9.77 7.11 99.48 0.71 -9.07 14 18 H -0.25 -8.75 7.11 99.48 0.71 -8.04 14 19 H 0.07 2.63 8.14 -2.39 -0.02 2.61 14 20 H 0.07 3.22 5.97 -2.38 -0.01 3.20 14 21 H 0.09 2.52 8.06 -2.39 -0.02 2.50 14 22 H 0.17 4.19 8.06 -2.91 -0.02 4.17 14 23 H 0.18 6.72 6.26 -2.91 -0.02 6.70 14 24 H 0.28 14.11 8.29 -92.71 -0.77 13.34 14 Total: -1.00 -63.42 234.31 4.46 -58.95 By element: Atomic # 1 Polarization: 9.88 SS G_CDS: 1.24 Total: 11.12 kcal Atomic # 6 Polarization: -13.34 SS G_CDS: 2.99 Total: -10.36 kcal Atomic # 7 Polarization: -62.37 SS G_CDS: -1.66 Total: -64.02 kcal Atomic # 8 Polarization: -34.22 SS G_CDS: -0.06 Total: -34.28 kcal Atomic # 14 Polarization: 37.26 SS G_CDS: 2.03 Total: 39.29 kcal Atomic # 17 Polarization: -0.63 SS G_CDS: -0.08 Total: -0.71 kcal Total: -63.42 4.46 -58.95 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000694948313.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.716 kcal (2) G-P(sol) polarization free energy of solvation -63.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds