Wall clock time and date at job start Mon Mar 30 2020 02:52:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86801 * 120.00130 * 2 1 4 4 H 1.48495 * 109.47291 * 239.99659 * 3 2 1 5 5 H 1.48507 * 109.46855 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47079 * 119.99463 * 3 2 1 7 7 C 1.37876 * 120.00206 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00514 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99790 * 0.02562 * 7 2 1 10 10 H 1.08996 * 110.33486 * 57.74666 * 9 7 2 11 11 C 1.54478 * 110.37166 * 179.97438 * 9 7 2 12 12 C 1.54511 * 104.06129 * 142.91760 * 11 9 7 13 13 C 1.54475 * 104.06536 * 0.02562 * 12 11 9 14 14 H 1.08996 * 110.37112 * 94.95769 * 13 12 11 15 15 C 1.50697 * 110.37533 * 217.18871 * 13 12 11 16 16 C 1.37804 * 122.62155 * 265.00060 * 15 13 12 17 17 N 1.30084 * 116.88523 * 180.02562 * 16 15 13 18 18 S 1.69604 * 107.14997 * 0.02562 * 17 16 15 19 19 C 1.35143 * 122.61923 * 85.01855 * 15 13 12 20 20 O 1.44424 * 110.46394 * 295.42760 * 9 7 2 21 21 H 0.96994 * 120.00128 * 0.02562 * 1 2 3 22 22 H 1.09006 * 110.51016 * 24.27786 * 11 9 7 23 23 H 1.08997 * 110.63459 * 261.61795 * 11 9 7 24 24 H 1.09002 * 110.51552 * 241.35592 * 12 11 9 25 25 H 1.09001 * 110.62927 * 118.70622 * 12 11 9 26 26 H 1.08001 * 121.55982 * 0.04201 * 16 15 13 27 27 H 1.08001 * 127.24812 * 0.02562 * 19 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2124 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6964 1.2126 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 1 0.5896 -2.5546 -0.8640 11 6 2.2363 -3.6889 0.0005 12 6 1.5548 -4.7407 0.9043 13 6 0.2381 -4.0622 1.3428 14 1 -0.5789 -4.3590 0.6853 15 6 -0.0842 -4.4167 2.7716 16 6 -0.9230 -5.4571 3.1077 17 7 -1.1241 -5.6643 4.3761 18 16 -0.2230 -4.5026 5.2217 19 6 0.4265 -3.7390 3.8233 20 8 0.4950 -2.6456 1.2223 21 1 -0.4850 0.8400 -0.0004 22 1 3.1967 -3.3895 0.4203 23 1 2.3668 -4.0796 -1.0086 24 1 2.1782 -4.9613 1.7708 25 1 1.3462 -5.6517 0.3433 26 1 -1.3914 -6.0719 2.3534 27 1 1.0995 -2.8948 3.7926 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000712888344.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:25 Heat of formation + Delta-G solvation = -28.271983 kcal Electronic energy + Delta-G solvation = -13288.699274 eV Core-core repulsion = 10944.302263 eV Total energy + Delta-G solvation = -2344.397011 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.056 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.64883 -38.92676 -34.78185 -32.76681 -32.51896 -29.84592 -27.17761 -25.26324 -22.96372 -21.81133 -20.51213 -19.19200 -18.36993 -16.99930 -16.74323 -16.31391 -15.63314 -15.17720 -15.06869 -14.24963 -14.16749 -14.03609 -13.53443 -12.82012 -12.56562 -12.44146 -12.36202 -12.13330 -11.98530 -11.52751 -11.26861 -11.03810 -10.73001 -10.58798 -10.09166 -9.49769 -8.16809 -6.36831 -0.24212 0.56729 0.90422 1.41704 1.43394 1.47754 1.51633 2.40604 3.04238 3.56134 3.86667 3.96654 4.10760 4.24316 4.32660 4.59856 4.69164 4.86819 4.87645 4.93609 5.05899 5.15844 5.30326 5.52405 5.64211 5.74373 6.16381 6.54735 6.90929 7.38968 8.91422 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.037570 B = 0.007811 C = 0.007054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 745.086727 B = 3583.739140 C = 3968.163576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.024 3.976 3 Si 0.960 3.040 4 H -0.264 1.264 5 H -0.284 1.284 6 H -0.270 1.270 7 C -0.551 4.551 8 H 0.066 0.934 9 C 0.197 3.803 10 H -0.002 1.002 11 C -0.139 4.139 12 C -0.129 4.129 13 C 0.122 3.878 14 H 0.070 0.930 15 C -0.169 4.169 16 C 0.108 3.892 17 N -0.485 5.485 18 S 0.261 5.739 19 C -0.181 4.181 20 O -0.380 6.380 21 H 0.262 0.738 22 H 0.060 0.940 23 H 0.074 0.926 24 H 0.070 0.930 25 H 0.097 0.903 26 H 0.213 0.787 27 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.320 -9.478 5.203 10.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.178 4.178 3 Si 0.784 3.216 4 H -0.188 1.188 5 H -0.210 1.210 6 H -0.195 1.195 7 C -0.588 4.588 8 H 0.084 0.916 9 C 0.141 3.859 10 H 0.015 0.985 11 C -0.177 4.177 12 C -0.167 4.167 13 C 0.060 3.940 14 H 0.088 0.912 15 C -0.186 4.186 16 C -0.091 4.091 17 N -0.305 5.305 18 S 0.413 5.587 19 C -0.329 4.329 20 O -0.300 6.300 21 H 0.071 0.929 22 H 0.079 0.921 23 H 0.093 0.907 24 H 0.089 0.911 25 H 0.116 0.884 26 H 0.229 0.771 27 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 0.544 -9.827 7.442 12.339 hybrid contribution 0.632 1.463 -2.073 2.615 sum 1.176 -8.364 5.369 10.008 Atomic orbital electron populations 1.70150 1.07714 1.27592 1.48688 1.25940 0.95570 1.03066 0.93245 0.85604 0.78412 0.78383 0.79189 1.18825 1.20986 1.19481 1.21449 0.93100 0.91276 1.52957 0.91588 1.20429 0.88166 0.93812 0.83483 0.98473 1.22923 0.99441 0.95485 0.99838 1.22885 0.95445 0.98654 0.99753 1.21405 0.97408 0.84993 0.90189 0.91236 1.20244 1.02188 0.98885 0.97250 1.22930 0.95768 0.96525 0.93853 1.76745 1.23271 1.21593 1.08905 1.83660 1.38883 1.22648 1.13497 1.26537 1.04463 1.04204 0.97697 1.89439 1.75443 1.20382 1.44700 0.92911 0.92135 0.90687 0.91128 0.88444 0.77112 0.80642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -54.15 13.07 21.45 0.28 -53.87 15 2 C 0.02 1.34 5.43 84.65 0.46 1.80 15 3 Si 0.96 43.39 29.54 68.60 2.03 45.41 15 4 H -0.26 -11.32 7.11 99.48 0.71 -10.62 15 5 H -0.28 -12.67 7.11 99.48 0.71 -11.96 15 6 H -0.27 -11.86 7.11 99.48 0.71 -11.15 15 7 C -0.55 -30.53 8.78 25.60 0.22 -30.31 15 8 H 0.07 3.51 7.57 -2.91 -0.02 3.49 15 9 C 0.20 9.97 3.05 30.35 0.09 10.06 15 10 H 0.00 -0.13 8.14 -2.39 -0.02 -0.15 15 11 C -0.14 -5.39 6.62 31.61 0.21 -5.19 15 12 C -0.13 -4.15 6.62 31.61 0.21 -3.94 15 13 C 0.12 4.53 3.61 30.35 0.11 4.64 15 14 H 0.07 2.46 8.13 -2.39 -0.02 2.44 15 15 C -0.17 -5.58 4.89 -20.68 -0.10 -5.68 15 16 C 0.11 3.01 11.07 84.85 0.94 3.95 15 17 N -0.49 -14.34 12.09 -62.60 -0.76 -15.10 15 18 S 0.26 7.27 23.72 -56.49 -1.34 5.93 15 19 C -0.18 -5.99 10.69 67.11 0.72 -5.27 15 20 O -0.38 -19.14 10.22 -148.98 -1.52 -20.66 15 21 H 0.26 14.88 8.31 -92.71 -0.77 14.11 15 22 H 0.06 2.37 7.71 -2.38 -0.02 2.35 15 23 H 0.07 2.59 8.14 -2.39 -0.02 2.57 15 24 H 0.07 2.15 7.87 -2.39 -0.02 2.14 15 25 H 0.10 2.46 8.14 -2.39 -0.02 2.44 15 26 H 0.21 4.36 8.06 -2.91 -0.02 4.33 15 27 H 0.18 6.20 8.02 -2.91 -0.02 6.18 15 Total: -1.00 -64.78 250.79 2.71 -62.06 By element: Atomic # 1 Polarization: 4.99 SS G_CDS: 1.17 Total: 6.16 kcal Atomic # 6 Polarization: -32.80 SS G_CDS: 2.86 Total: -29.94 kcal Atomic # 7 Polarization: -68.49 SS G_CDS: -0.48 Total: -68.97 kcal Atomic # 8 Polarization: -19.14 SS G_CDS: -1.52 Total: -20.66 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 2.03 Total: 45.41 kcal Atomic # 16 Polarization: 7.27 SS G_CDS: -1.34 Total: 5.93 kcal Total: -64.78 2.71 -62.06 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712888344.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.791 kcal (2) G-P(sol) polarization free energy of solvation -64.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds