Wall clock time and date at job start Mon Mar 30 2020 02:52:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48490 * 109.47405 * 240.00239 * 3 2 1 5 5 H 1.48503 * 109.46845 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47399 * 119.99834 * 3 2 1 7 7 C 1.37879 * 120.00338 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00381 * 180.27722 * 7 2 1 9 9 C 1.50706 * 119.99394 * 0.02562 * 7 2 1 10 10 H 1.08997 * 110.33048 * 300.69941 * 9 7 2 11 11 C 1.54481 * 110.36847 * 178.45017 * 9 7 2 12 12 C 1.54511 * 104.06245 * 217.19266 * 11 9 7 13 13 C 1.54486 * 104.06055 * 359.97438 * 12 11 9 14 14 H 1.09000 * 110.36821 * 265.14894 * 13 12 11 15 15 C 1.50699 * 110.36910 * 142.81361 * 13 12 11 16 16 C 1.37809 * 122.61990 * 279.70569 * 15 13 12 17 17 N 1.30085 * 116.87931 * 179.78987 * 16 15 13 18 18 S 1.69600 * 107.15244 * 0.44403 * 17 16 15 19 19 C 1.35143 * 122.61956 * 100.00239 * 15 13 12 20 20 O 1.44427 * 110.37219 * 62.95360 * 9 7 2 21 21 H 0.96996 * 119.99730 * 359.97438 * 1 2 3 22 22 H 1.09000 * 110.51059 * 335.83611 * 11 9 7 23 23 H 1.08996 * 110.51294 * 98.54711 * 11 9 7 24 24 H 1.08991 * 110.51739 * 118.64358 * 12 11 9 25 25 H 1.08998 * 110.51105 * 241.22311 * 12 11 9 26 26 H 1.08000 * 121.55693 * 0.02562 * 16 15 13 27 27 H 1.08001 * 127.25157 * 359.95142 * 19 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 0.0040 9 6 1.2510 -2.4991 -0.0017 10 1 0.6094 -2.5668 0.8768 11 6 2.2359 -3.6887 -0.0413 12 6 1.5349 -4.7265 -0.9462 13 6 0.2091 -4.0414 -1.3458 14 1 -0.5932 -4.3470 -0.6743 15 6 -0.1440 -4.3740 -2.7726 16 6 0.4261 -3.7289 -3.8486 17 7 0.0426 -4.1081 -5.0324 18 16 -1.1079 -5.3354 -4.8161 19 6 -1.0487 -5.3241 -3.0966 20 8 0.4669 -2.6259 -1.2080 21 1 -0.4849 0.8400 0.0004 22 1 3.1870 -3.3826 -0.4769 23 1 2.3858 -4.0939 0.9594 24 1 2.1394 -4.9336 -1.8292 25 1 1.3403 -5.6456 -0.3935 26 1 1.1599 -2.9477 -3.7154 27 1 -1.6150 -5.9458 -2.4190 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000712888346.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:27 Heat of formation + Delta-G solvation = -28.121733 kcal Electronic energy + Delta-G solvation = -13311.633269 eV Core-core repulsion = 10967.242773 eV Total energy + Delta-G solvation = -2344.390496 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.056 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.67143 -38.87496 -34.76064 -32.98295 -32.44999 -29.86947 -26.85921 -25.22945 -23.28445 -21.74645 -20.55552 -18.86299 -18.62824 -16.95004 -16.82220 -16.22560 -15.63927 -15.17774 -15.05291 -14.25858 -14.19271 -14.00442 -13.53575 -12.81345 -12.62047 -12.45311 -12.25269 -12.18366 -11.97892 -11.58499 -11.21349 -11.04169 -10.73262 -10.59152 -10.07674 -9.47154 -8.15857 -6.35434 -0.26648 0.60403 0.88678 1.41678 1.43610 1.46156 1.51704 2.41258 3.07747 3.67448 3.82030 3.96628 4.03862 4.24232 4.29942 4.53678 4.64549 4.78950 4.91695 4.98468 5.06553 5.16750 5.27682 5.53775 5.65786 5.75362 6.16980 6.54346 6.92076 7.40123 8.92290 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.039513 B = 0.007662 C = 0.006988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 708.450271 B = 3653.298002 C = 4005.882331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.024 3.976 3 Si 0.959 3.041 4 H -0.271 1.271 5 H -0.285 1.285 6 H -0.263 1.263 7 C -0.551 4.551 8 H 0.067 0.933 9 C 0.197 3.803 10 H -0.002 1.002 11 C -0.139 4.139 12 C -0.130 4.130 13 C 0.122 3.878 14 H 0.069 0.931 15 C -0.167 4.167 16 C 0.109 3.891 17 N -0.499 5.499 18 S 0.272 5.728 19 C -0.182 4.182 20 O -0.379 6.379 21 H 0.261 0.739 22 H 0.061 0.939 23 H 0.075 0.925 24 H 0.070 0.930 25 H 0.097 0.903 26 H 0.171 0.829 27 H 0.218 0.782 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.078 -12.054 -4.102 12.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.178 4.178 3 Si 0.783 3.217 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.187 1.187 7 C -0.588 4.588 8 H 0.085 0.915 9 C 0.141 3.859 10 H 0.015 0.985 11 C -0.177 4.177 12 C -0.168 4.168 13 C 0.060 3.940 14 H 0.087 0.913 15 C -0.183 4.183 16 C -0.088 4.088 17 N -0.319 5.319 18 S 0.424 5.576 19 C -0.331 4.331 20 O -0.299 6.299 21 H 0.070 0.930 22 H 0.080 0.920 23 H 0.094 0.906 24 H 0.089 0.911 25 H 0.115 0.885 26 H 0.188 0.812 27 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -1.740 -12.184 -6.410 13.877 hybrid contribution 0.788 1.550 1.988 2.641 sum -0.952 -10.634 -4.422 11.556 Atomic orbital electron populations 1.70153 1.07680 1.27511 1.48703 1.25928 0.95568 1.03018 0.93292 0.85622 0.78434 0.78481 0.79162 1.19608 1.21023 1.18741 1.21459 0.93134 0.91301 1.52946 0.91527 1.20439 0.87820 0.93852 0.83767 0.98472 1.22931 0.99424 0.95512 0.99828 1.22878 0.95339 0.98718 0.99834 1.21448 0.97284 0.85080 0.90159 0.91299 1.20117 1.01195 0.99833 0.97190 1.22683 0.99645 0.99173 0.87308 1.76690 1.15397 1.14372 1.25417 1.83567 1.39432 1.35194 0.99443 1.26734 1.01123 1.02344 1.02851 1.89475 1.74030 1.20403 1.46007 0.92970 0.92048 0.90620 0.91128 0.88496 0.81240 0.76501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -54.49 13.00 21.45 0.28 -54.21 15 2 C 0.02 1.36 5.42 84.66 0.46 1.82 15 3 Si 0.96 43.93 29.54 68.60 2.03 45.95 15 4 H -0.27 -12.15 7.11 99.48 0.71 -11.44 15 5 H -0.28 -12.86 7.11 99.48 0.71 -12.15 15 6 H -0.26 -11.40 7.11 99.48 0.71 -10.69 15 7 C -0.55 -30.76 8.78 25.60 0.22 -30.54 15 8 H 0.07 3.56 7.58 -2.91 -0.02 3.54 15 9 C 0.20 10.01 3.08 30.35 0.09 10.11 15 10 H 0.00 -0.13 8.14 -2.39 -0.02 -0.15 15 11 C -0.14 -5.41 6.62 31.61 0.21 -5.20 15 12 C -0.13 -4.18 6.62 31.61 0.21 -3.97 15 13 C 0.12 4.56 3.59 30.35 0.11 4.67 15 14 H 0.07 2.45 8.11 -2.39 -0.02 2.43 15 15 C -0.17 -5.55 4.85 -20.68 -0.10 -5.65 15 16 C 0.11 3.96 10.69 84.85 0.91 4.87 15 17 N -0.50 -17.07 12.09 -62.60 -0.76 -17.83 15 18 S 0.27 6.92 23.72 -56.49 -1.34 5.58 15 19 C -0.18 -4.60 11.18 67.11 0.75 -3.85 15 20 O -0.38 -19.28 10.15 -148.98 -1.51 -20.79 15 21 H 0.26 14.98 8.31 -92.71 -0.77 14.21 15 22 H 0.06 2.42 7.72 -2.39 -0.02 2.40 15 23 H 0.08 2.60 8.14 -2.39 -0.02 2.58 15 24 H 0.07 2.17 7.86 -2.39 -0.02 2.15 15 25 H 0.10 2.45 8.14 -2.39 -0.02 2.43 15 26 H 0.17 6.68 7.92 -2.91 -0.02 6.66 15 27 H 0.22 3.72 8.06 -2.91 -0.02 3.69 15 Total: -1.00 -66.11 250.64 2.73 -63.39 By element: Atomic # 1 Polarization: 4.49 SS G_CDS: 1.17 Total: 5.65 kcal Atomic # 6 Polarization: -30.60 SS G_CDS: 2.86 Total: -27.74 kcal Atomic # 7 Polarization: -71.57 SS G_CDS: -0.48 Total: -72.05 kcal Atomic # 8 Polarization: -19.28 SS G_CDS: -1.51 Total: -20.79 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 2.03 Total: 45.95 kcal Atomic # 16 Polarization: 6.92 SS G_CDS: -1.34 Total: 5.58 kcal Total: -66.11 2.73 -63.39 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712888346.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.266 kcal (2) G-P(sol) polarization free energy of solvation -66.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds