Wall clock time and date at job start Mon Mar 30 2020 02:52:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 119.99940 * 2 1 4 4 H 1.48497 * 109.47227 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.46806 * 299.99779 * 3 2 1 6 6 H 1.48498 * 109.47521 * 59.99743 * 3 2 1 7 7 C 1.37882 * 119.99995 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99925 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99960 * 359.97438 * 7 2 1 10 10 H 1.09004 * 110.35317 * 299.30971 * 9 7 2 11 11 C 1.54948 * 110.31054 * 177.16483 * 9 7 2 12 12 C 1.55302 * 100.94441 * 204.64045 * 11 9 7 13 13 C 1.54377 * 102.25240 * 34.13413 * 12 11 9 14 14 H 1.09002 * 109.90836 * 98.19942 * 13 12 11 15 15 C 1.50706 * 109.83104 * 219.13217 * 13 12 11 16 16 C 1.37809 * 122.62193 * 84.29557 * 15 13 12 17 17 N 1.30082 * 116.87860 * 179.78915 * 16 15 13 18 18 S 1.69602 * 107.15055 * 0.44081 * 17 16 15 19 19 C 1.35147 * 122.61560 * 264.58656 * 15 13 12 20 20 O 1.43241 * 107.58892 * 338.64217 * 13 12 11 21 21 H 0.97002 * 120.00178 * 359.97438 * 1 2 3 22 22 H 1.09001 * 111.12443 * 322.56413 * 11 9 7 23 23 H 1.09006 * 111.12100 * 86.67988 * 11 9 7 24 24 H 1.09001 * 110.84872 * 275.94219 * 12 11 9 25 25 H 1.08997 * 110.84562 * 152.32468 * 12 11 9 26 26 H 1.08000 * 121.55658 * 359.97438 * 16 15 13 27 27 H 1.07990 * 127.24636 * 359.97438 * 19 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3963 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0017 10 1 0.6286 -2.5767 0.8932 11 6 2.2390 -3.6907 -0.0698 12 6 1.3335 -4.7875 -0.6935 13 6 0.4290 -3.9674 -1.6382 14 1 0.8130 -4.0188 -2.6570 15 6 -0.9778 -4.5062 -1.5945 16 6 -1.8879 -4.1296 -0.6306 17 7 -3.0731 -4.6611 -0.7012 18 16 -3.0734 -5.7070 -2.0364 19 6 -1.4435 -5.4008 -2.4940 20 8 0.4438 -2.6099 -1.1813 21 1 -0.4850 0.8400 0.0004 22 1 3.0837 -3.4621 -0.7196 23 1 2.5786 -3.9795 0.9250 24 1 0.7419 -5.2852 0.0748 25 1 1.9281 -5.5084 -1.2546 26 1 -1.6301 -3.4238 0.1452 27 1 -0.9057 -5.8324 -3.3251 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000712888350.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:30 Heat of formation + Delta-G solvation = -8.997538 kcal Electronic energy + Delta-G solvation = -13379.753192 eV Core-core repulsion = 11036.191983 eV Total energy + Delta-G solvation = -2343.561209 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.056 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.29100 -37.25834 -32.77149 -31.47258 -30.87639 -28.17090 -25.10056 -23.83659 -21.32080 -20.40921 -19.21312 -17.34417 -16.64372 -15.84409 -14.87310 -14.65280 -14.10360 -13.74928 -13.16561 -12.89047 -12.47544 -12.25813 -11.77722 -11.29104 -10.99382 -10.82816 -10.63847 -10.44558 -10.39402 -10.22100 -9.76374 -9.30091 -9.16920 -8.62942 -8.30422 -7.95589 -6.04945 -4.17861 1.03931 1.86028 2.21239 2.87579 3.28472 3.36786 3.39702 4.39784 4.97258 5.10618 5.28068 5.34455 5.46024 5.64391 5.65813 5.92394 6.11775 6.21011 6.35508 6.48504 6.55301 6.66759 6.73295 7.04852 7.49620 7.85142 8.19416 8.52975 8.96632 9.53567 11.02599 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.043687 B = 0.007741 C = 0.006954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 640.771969 B = 3616.311991 C = 4025.701783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.862 5.862 2 C 0.079 3.921 3 Si 0.891 3.109 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.536 4.536 8 H 0.064 0.936 9 C 0.208 3.792 10 H 0.028 0.972 11 C -0.147 4.147 12 C -0.146 4.146 13 C 0.135 3.865 14 H 0.073 0.927 15 C -0.153 4.153 16 C 0.124 3.876 17 N -0.462 5.462 18 S 0.198 5.802 19 C -0.209 4.209 20 O -0.346 6.346 21 H 0.261 0.739 22 H 0.068 0.932 23 H 0.064 0.936 24 H 0.065 0.935 25 H 0.066 0.934 26 H 0.192 0.808 27 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.798 -10.440 -3.459 11.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.498 5.498 2 C -0.128 4.128 3 Si 0.719 3.281 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.573 4.573 8 H 0.082 0.918 9 C 0.153 3.847 10 H 0.046 0.954 11 C -0.185 4.185 12 C -0.184 4.184 13 C 0.072 3.928 14 H 0.090 0.910 15 C -0.170 4.170 16 C -0.074 4.074 17 N -0.280 5.280 18 S 0.350 5.650 19 C -0.357 4.357 20 O -0.265 6.265 21 H 0.071 0.929 22 H 0.086 0.914 23 H 0.083 0.917 24 H 0.084 0.916 25 H 0.085 0.915 26 H 0.209 0.791 27 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -3.203 -10.887 -3.379 11.841 hybrid contribution 2.250 1.444 -0.060 2.674 sum -0.953 -9.443 -3.440 10.095 Atomic orbital electron populations 1.70020 1.06015 1.26620 1.47121 1.25068 0.94774 0.99316 0.93600 0.86566 0.80212 0.83682 0.77669 1.19636 1.20854 1.20892 1.21129 0.92769 0.89977 1.53414 0.91760 1.20598 0.86801 0.92517 0.84796 0.95398 1.23352 0.99280 0.95863 0.99987 1.23114 0.97970 0.98401 0.98885 1.21091 0.87154 0.86407 0.98125 0.90968 1.20898 1.01003 0.99336 0.95768 1.22940 0.87767 0.97424 0.99315 1.76904 1.22838 1.13490 1.14765 1.83749 1.09939 1.45715 1.25590 1.26226 1.01089 1.03772 1.04602 1.88930 1.71851 1.19705 1.46021 0.92891 0.91365 0.91743 0.91583 0.91483 0.79110 0.80388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.04 12.93 55.43 0.72 -24.33 15 2 C 0.08 2.18 5.42 -17.82 -0.10 2.08 15 3 Si 0.89 21.03 29.54 -169.99 -5.02 16.00 15 4 H -0.27 -6.26 7.11 56.52 0.40 -5.86 15 5 H -0.28 -6.69 7.11 56.52 0.40 -6.29 15 6 H -0.28 -6.59 7.11 56.52 0.40 -6.19 15 7 C -0.54 -14.55 8.81 -34.44 -0.30 -14.86 15 8 H 0.06 1.70 7.77 -52.49 -0.41 1.29 15 9 C 0.21 5.09 3.27 -26.86 -0.09 5.00 15 10 H 0.03 0.73 8.14 -51.93 -0.42 0.31 15 11 C -0.15 -2.86 6.53 -24.48 -0.16 -3.02 15 12 C -0.15 -2.43 6.53 -24.79 -0.16 -2.59 15 13 C 0.13 2.55 3.84 -27.16 -0.10 2.45 15 14 H 0.07 1.28 8.11 -51.93 -0.42 0.86 15 15 C -0.15 -2.69 4.80 -105.88 -0.51 -3.20 15 16 C 0.12 2.37 10.66 -18.45 -0.20 2.17 15 17 N -0.46 -8.51 12.09 28.86 0.35 -8.16 15 18 S 0.20 2.93 23.72 -107.50 -2.55 0.38 15 19 C -0.21 -3.04 11.18 29.63 0.33 -2.71 15 20 O -0.35 -8.51 9.63 -35.23 -0.34 -8.85 15 21 H 0.26 7.21 8.31 -40.82 -0.34 6.87 15 22 H 0.07 1.32 8.05 -51.93 -0.42 0.90 15 23 H 0.06 1.15 8.14 -51.93 -0.42 0.72 15 24 H 0.07 1.06 7.84 -51.93 -0.41 0.66 15 25 H 0.07 0.94 8.14 -51.93 -0.42 0.52 15 26 H 0.19 3.91 7.87 -52.49 -0.41 3.49 15 27 H 0.18 1.99 8.06 -52.49 -0.42 1.57 15 LS Contribution 250.70 15.07 3.78 3.78 Total: -1.00 -29.75 250.70 -7.25 -37.00 By element: Atomic # 1 Polarization: 1.75 SS G_CDS: -2.89 Total: -1.14 kcal Atomic # 6 Polarization: -13.39 SS G_CDS: -1.29 Total: -14.68 kcal Atomic # 7 Polarization: -33.55 SS G_CDS: 1.07 Total: -32.49 kcal Atomic # 8 Polarization: -8.51 SS G_CDS: -0.34 Total: -8.85 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.00 kcal Atomic # 16 Polarization: 2.93 SS G_CDS: -2.55 Total: 0.38 kcal Total LS contribution 3.78 Total: 3.78 kcal Total: -29.75 -7.25 -37.00 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712888350.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.999 kcal (2) G-P(sol) polarization free energy of solvation -29.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds