Wall clock time and date at job start Mon Mar 30 2020 02:52:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 119.99940 * 2 1 4 4 H 1.48497 * 109.47227 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.46806 * 299.99779 * 3 2 1 6 6 H 1.48498 * 109.47521 * 59.99743 * 3 2 1 7 7 C 1.37882 * 119.99995 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99925 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99960 * 359.97438 * 7 2 1 10 10 H 1.09004 * 110.35317 * 299.30971 * 9 7 2 11 11 C 1.54948 * 110.31054 * 177.16483 * 9 7 2 12 12 C 1.55302 * 100.94441 * 204.64045 * 11 9 7 13 13 C 1.54377 * 102.25240 * 34.13413 * 12 11 9 14 14 H 1.09002 * 109.90836 * 98.19942 * 13 12 11 15 15 C 1.50706 * 109.83104 * 219.13217 * 13 12 11 16 16 C 1.37809 * 122.62193 * 84.29557 * 15 13 12 17 17 N 1.30082 * 116.87860 * 179.78915 * 16 15 13 18 18 S 1.69602 * 107.15055 * 0.44081 * 17 16 15 19 19 C 1.35147 * 122.61560 * 264.58656 * 15 13 12 20 20 O 1.43241 * 107.58892 * 338.64217 * 13 12 11 21 21 H 0.97002 * 120.00178 * 359.97438 * 1 2 3 22 22 H 1.09001 * 111.12443 * 322.56413 * 11 9 7 23 23 H 1.09006 * 111.12100 * 86.67988 * 11 9 7 24 24 H 1.09001 * 110.84872 * 275.94219 * 12 11 9 25 25 H 1.08997 * 110.84562 * 152.32468 * 12 11 9 26 26 H 1.08000 * 121.55658 * 359.97438 * 16 15 13 27 27 H 1.07990 * 127.24636 * 359.97438 * 19 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3963 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0017 10 1 0.6286 -2.5767 0.8932 11 6 2.2390 -3.6907 -0.0698 12 6 1.3335 -4.7875 -0.6935 13 6 0.4290 -3.9674 -1.6382 14 1 0.8130 -4.0188 -2.6570 15 6 -0.9778 -4.5062 -1.5945 16 6 -1.8879 -4.1296 -0.6306 17 7 -3.0731 -4.6611 -0.7012 18 16 -3.0734 -5.7070 -2.0364 19 6 -1.4435 -5.4008 -2.4940 20 8 0.4438 -2.6099 -1.1813 21 1 -0.4850 0.8400 0.0004 22 1 3.0837 -3.4621 -0.7196 23 1 2.5786 -3.9795 0.9250 24 1 0.7419 -5.2852 0.0748 25 1 1.9281 -5.5084 -1.2546 26 1 -1.6301 -3.4238 0.1452 27 1 -0.9057 -5.8324 -3.3251 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000712888350.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:29 Heat of formation + Delta-G solvation = -28.219493 kcal Electronic energy + Delta-G solvation = -13380.586718 eV Core-core repulsion = 11036.191983 eV Total energy + Delta-G solvation = -2344.394735 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.056 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.75338 -38.79817 -34.75111 -32.99159 -32.45552 -29.84525 -26.79289 -25.37434 -22.87443 -22.09786 -20.53574 -18.67449 -18.62133 -17.35241 -16.69750 -16.26941 -15.75244 -15.11465 -14.69264 -14.35433 -14.11998 -13.84501 -13.54758 -12.84771 -12.63838 -12.39553 -12.26447 -12.12028 -12.04660 -11.75130 -11.27821 -10.99351 -10.69747 -10.57859 -9.93422 -9.41590 -8.13132 -6.33113 -0.24175 0.64464 0.89965 1.41276 1.43004 1.48378 1.54926 2.42407 3.09732 3.69872 3.84925 3.91592 3.99443 4.24502 4.31395 4.58898 4.62839 4.75984 4.92894 5.01171 5.05724 5.18641 5.24151 5.59413 5.71304 5.78405 6.20725 6.61905 7.06274 7.43347 8.94557 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.043687 B = 0.007741 C = 0.006954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 640.771969 B = 3616.311991 C = 4025.701783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.024 3.976 3 Si 0.959 3.041 4 H -0.260 1.260 5 H -0.283 1.283 6 H -0.279 1.279 7 C -0.554 4.554 8 H 0.067 0.933 9 C 0.201 3.799 10 H -0.007 1.007 11 C -0.140 4.140 12 C -0.130 4.130 13 C 0.127 3.873 14 H 0.090 0.910 15 C -0.182 4.182 16 C 0.109 3.891 17 N -0.502 5.502 18 S 0.262 5.738 19 C -0.181 4.181 20 O -0.382 6.382 21 H 0.260 0.740 22 H 0.071 0.929 23 H 0.077 0.923 24 H 0.068 0.932 25 H 0.106 0.894 26 H 0.158 0.842 27 H 0.222 0.778 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.085 -12.129 -5.049 13.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.178 4.178 3 Si 0.783 3.217 4 H -0.184 1.184 5 H -0.209 1.209 6 H -0.204 1.204 7 C -0.591 4.591 8 H 0.085 0.915 9 C 0.145 3.855 10 H 0.011 0.989 11 C -0.177 4.177 12 C -0.168 4.168 13 C 0.065 3.935 14 H 0.107 0.893 15 C -0.199 4.199 16 C -0.088 4.088 17 N -0.322 5.322 18 S 0.414 5.586 19 C -0.329 4.329 20 O -0.302 6.302 21 H 0.069 0.931 22 H 0.089 0.911 23 H 0.095 0.905 24 H 0.087 0.913 25 H 0.124 0.876 26 H 0.175 0.825 27 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges -2.298 -12.584 -4.961 13.721 hybrid contribution 1.876 1.832 0.357 2.646 sum -0.422 -10.753 -4.604 11.704 Atomic orbital electron populations 1.70175 1.07664 1.27225 1.48843 1.25926 0.95542 1.03000 0.93379 0.85517 0.79363 0.79251 0.77522 1.18383 1.20893 1.20442 1.21597 0.93210 0.91580 1.52741 0.91483 1.20448 0.87324 0.93788 0.83892 0.98899 1.23226 0.98543 0.94740 1.01214 1.23065 0.97214 0.97825 0.98683 1.21343 0.88654 0.84313 0.99147 0.89273 1.20711 1.00457 1.01593 0.97103 1.22623 0.88695 0.97833 0.99657 1.76671 1.22872 1.15087 1.17569 1.83521 1.09169 1.43021 1.22856 1.26721 1.00989 1.01302 1.03874 1.88816 1.72164 1.23603 1.45634 0.93137 0.91056 0.90456 0.91322 0.87552 0.82457 0.76149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -54.54 12.93 21.45 0.28 -54.27 15 2 C 0.02 1.33 5.42 84.66 0.46 1.79 15 3 Si 0.96 43.89 29.54 68.60 2.03 45.92 15 4 H -0.26 -11.27 7.11 99.48 0.71 -10.56 15 5 H -0.28 -12.87 7.11 99.48 0.71 -12.16 15 6 H -0.28 -12.45 7.11 99.48 0.71 -11.74 15 7 C -0.55 -30.75 8.81 25.60 0.23 -30.53 15 8 H 0.07 3.56 7.77 -2.91 -0.02 3.54 15 9 C 0.20 10.14 3.27 30.51 0.10 10.24 15 10 H -0.01 -0.37 8.14 -2.38 -0.02 -0.39 15 11 C -0.14 -5.30 6.53 32.05 0.21 -5.09 15 12 C -0.13 -4.05 6.53 31.85 0.21 -3.84 15 13 C 0.13 4.66 3.84 30.32 0.12 4.77 15 14 H 0.09 2.92 8.11 -2.39 -0.02 2.90 15 15 C -0.18 -6.20 4.80 -20.68 -0.10 -6.29 15 16 C 0.11 4.28 10.66 84.85 0.90 5.18 15 17 N -0.50 -18.49 12.09 -62.60 -0.76 -19.25 15 18 S 0.26 7.02 23.72 -56.49 -1.34 5.68 15 19 C -0.18 -4.60 11.18 67.11 0.75 -3.85 15 20 O -0.38 -19.29 9.63 -148.98 -1.43 -20.73 15 21 H 0.26 14.92 8.31 -92.71 -0.77 14.15 15 22 H 0.07 2.64 8.05 -2.39 -0.02 2.63 15 23 H 0.08 2.68 8.14 -2.38 -0.02 2.66 15 24 H 0.07 2.10 7.84 -2.39 -0.02 2.08 15 25 H 0.11 2.50 8.14 -2.39 -0.02 2.48 15 26 H 0.16 7.08 7.87 -2.91 -0.02 7.05 15 27 H 0.22 3.62 8.06 -2.92 -0.02 3.60 15 Total: -1.00 -66.83 250.70 2.81 -64.02 By element: Atomic # 1 Polarization: 5.07 SS G_CDS: 1.17 Total: 6.24 kcal Atomic # 6 Polarization: -30.48 SS G_CDS: 2.87 Total: -27.61 kcal Atomic # 7 Polarization: -73.04 SS G_CDS: -0.48 Total: -73.52 kcal Atomic # 8 Polarization: -19.29 SS G_CDS: -1.43 Total: -20.73 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.92 kcal Atomic # 16 Polarization: 7.02 SS G_CDS: -1.34 Total: 5.68 kcal Total: -66.83 2.81 -64.02 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712888350.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.796 kcal (2) G-P(sol) polarization free energy of solvation -66.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.015 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds