Wall clock time and date at job start Mon Mar 30 2020 02:51:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31440 * 1 3 3 Si 1.86798 * 120.00032 * 2 1 4 4 H 1.48495 * 109.47318 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47253 * 300.00300 * 3 2 1 6 6 H 1.48502 * 109.47134 * 59.99713 * 3 2 1 7 7 C 1.38752 * 119.99961 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99770 * 180.02562 * 7 2 1 9 9 O 1.34915 * 120.00201 * 359.97438 * 7 2 1 10 10 C 1.34309 * 117.00304 * 180.02562 * 9 7 2 11 11 O 1.21209 * 119.99743 * 359.97438 * 10 9 7 12 12 C 1.50694 * 120.00332 * 180.02562 * 10 9 7 13 13 C 1.50698 * 109.47675 * 179.97438 * 12 10 9 14 14 C 1.38232 * 119.59260 * 124.99570 * 13 12 10 15 15 C 1.38596 * 119.18886 * 180.02562 * 14 13 12 16 16 C 1.38879 * 118.39652 * 0.25621 * 15 14 13 17 17 F 1.35106 * 120.44068 * 179.74732 * 16 15 14 18 18 C 1.38422 * 119.11596 * 359.51901 * 16 15 14 19 19 N 1.31848 * 119.58665 * 305.02401 * 13 12 10 20 20 H 0.97000 * 120.00272 * 359.97438 * 1 2 3 21 21 H 1.09006 * 109.47563 * 59.99709 * 12 10 9 22 22 H 1.09001 * 109.46967 * 299.99813 * 12 10 9 23 23 H 1.08002 * 120.40687 * 0.02599 * 14 13 12 24 24 H 1.08002 * 120.79700 * 179.97438 * 15 14 13 25 25 H 1.07999 * 119.63454 * 180.20814 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2484 1.6177 0.0000 4 1 3.7084 1.3464 -0.0006 5 1 1.8896 2.3965 -1.2125 6 1 1.8896 2.3965 1.2125 7 6 2.0082 -1.2016 -0.0005 8 1 3.0881 -1.2016 -0.0001 9 8 1.3336 -2.3701 -0.0005 10 6 2.0651 -3.4965 -0.0005 11 8 3.2755 -3.4330 -0.0010 12 6 1.3810 -4.8392 -0.0011 13 6 2.4188 -5.9319 -0.0016 14 6 2.3891 -6.9020 0.9826 15 6 3.3479 -7.9027 0.9745 16 6 4.3103 -7.8872 -0.0267 17 9 5.2674 -8.8398 -0.0710 18 6 4.2730 -6.8855 -0.9813 19 7 3.3442 -5.9503 -0.9406 20 1 -0.4850 0.8400 0.0004 21 1 0.7585 -4.9295 -0.8914 22 1 0.7579 -4.9299 0.8886 23 1 1.6280 -6.8805 1.7486 24 1 3.3494 -8.6734 1.7311 25 1 5.0153 -6.8673 -1.7656 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000795897329.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:18 Heat of formation + Delta-G solvation = -89.195033 kcal Electronic energy + Delta-G solvation = -14454.508568 eV Core-core repulsion = 11541.256558 eV Total energy + Delta-G solvation = -2913.252009 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 225.059 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -48.97778 -40.18104 -38.69974 -35.17643 -32.49822 -32.43577 -32.05941 -28.10929 -25.19498 -23.90696 -22.58813 -20.04510 -17.68543 -17.64093 -17.29389 -16.41025 -15.99755 -15.75666 -14.82618 -14.47841 -14.32131 -13.97416 -13.80104 -13.20646 -12.96379 -12.24415 -12.04323 -11.90272 -11.52330 -11.10659 -10.37733 -10.31692 -9.90868 -9.76159 -9.43311 -9.00917 -8.72370 -8.53773 -6.37098 -4.04430 0.93177 1.15774 3.13180 3.21747 3.29359 3.57807 3.62878 4.01617 4.02443 4.38918 4.50881 4.71744 4.76839 4.98074 5.15990 5.39126 5.63359 5.68718 5.83306 5.92159 6.03366 6.58879 6.84252 7.44517 8.00245 8.01236 8.77973 9.12331 9.90432 10.81289 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.064374 B = 0.005599 C = 0.005319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 434.857080 B = 4999.811047 C = 5262.423700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.041 3.959 3 Si 0.942 3.058 4 H -0.266 1.266 5 H -0.276 1.276 6 H -0.277 1.277 7 C -0.378 4.378 8 H 0.095 0.905 9 O -0.218 6.218 10 C 0.405 3.595 11 O -0.540 6.540 12 C -0.059 4.059 13 C 0.145 3.855 14 C -0.139 4.139 15 C -0.111 4.111 16 C 0.033 3.967 17 F -0.136 7.136 18 C 0.082 3.918 19 N -0.425 5.425 20 H 0.268 0.732 21 H 0.114 0.886 22 H 0.110 0.890 23 H 0.147 0.853 24 H 0.145 0.855 25 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.778 -13.644 1.398 13.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.505 5.505 2 C -0.163 4.163 3 Si 0.766 3.234 4 H -0.190 1.190 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.455 4.455 8 H 0.113 0.887 9 O -0.125 6.125 10 C 0.249 3.751 11 O -0.435 6.435 12 C -0.097 4.097 13 C 0.007 3.993 14 C -0.159 4.159 15 C -0.137 4.137 16 C 0.012 3.988 17 F -0.115 7.115 18 C -0.078 4.078 19 N -0.132 5.132 20 H 0.078 0.922 21 H 0.132 0.868 22 H 0.129 0.871 23 H 0.164 0.836 24 H 0.163 0.837 25 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 2.939 -12.828 0.759 13.183 hybrid contribution 0.634 -0.067 0.676 0.929 sum 3.573 -12.896 1.435 13.458 Atomic orbital electron populations 1.69997 1.05945 1.27453 1.47146 1.25308 0.95808 0.98771 0.96379 0.85632 0.79479 0.80191 0.78060 1.19008 1.20204 1.20242 1.21251 0.92365 0.79795 1.52074 0.88714 1.83861 1.39282 1.13279 1.76125 1.22672 0.86712 0.86728 0.78941 1.90590 1.15465 1.87823 1.49648 1.20033 0.95599 0.88120 1.05950 1.20862 0.93759 0.94107 0.90580 1.21890 0.99785 0.94612 0.99580 1.21551 0.94150 0.99966 0.98037 1.18856 0.90076 0.90533 0.99344 1.91494 1.61648 1.62103 1.96219 1.22929 0.97822 0.89388 0.97630 1.67580 1.01304 1.20402 1.23927 0.92221 0.86800 0.87135 0.83558 0.83689 0.81811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.53 13.67 55.48 0.76 -24.78 15 2 C 0.04 1.16 5.49 -17.53 -0.10 1.06 15 3 Si 0.94 21.58 29.55 -169.99 -5.02 16.55 15 4 H -0.27 -6.04 7.11 56.52 0.40 -5.64 15 5 H -0.28 -6.13 7.11 56.52 0.40 -5.73 15 6 H -0.28 -6.11 7.11 56.52 0.40 -5.71 15 7 C -0.38 -11.32 9.64 30.92 0.30 -11.02 15 8 H 0.10 2.88 6.86 -52.49 -0.36 2.52 15 9 O -0.22 -6.23 9.75 -20.68 -0.20 -6.44 15 10 C 0.40 9.97 7.84 36.00 0.28 10.26 15 11 O -0.54 -14.76 14.57 -19.05 -0.28 -15.04 15 12 C -0.06 -1.02 6.21 -29.04 -0.18 -1.20 15 13 C 0.14 2.39 5.76 -82.59 -0.48 1.92 15 14 C -0.14 -1.76 9.71 -39.45 -0.38 -2.14 15 15 C -0.11 -1.30 10.16 -39.21 -0.40 -1.69 15 16 C 0.03 0.44 7.35 -39.28 -0.29 0.15 15 17 F -0.14 -1.72 17.28 2.25 0.04 -1.68 15 18 C 0.08 1.22 11.17 -17.47 -0.20 1.02 15 19 N -0.42 -7.68 9.22 -9.42 -0.09 -7.77 15 20 H 0.27 7.21 8.31 -40.82 -0.34 6.87 15 21 H 0.11 1.80 8.14 -51.93 -0.42 1.37 15 22 H 0.11 1.56 7.87 -51.93 -0.41 1.15 15 23 H 0.15 1.38 7.95 -52.49 -0.42 0.96 15 24 H 0.15 1.24 8.06 -52.49 -0.42 0.82 15 25 H 0.16 2.02 8.06 -52.49 -0.42 1.60 15 LS Contribution 243.94 15.07 3.68 3.68 Total: -1.00 -34.78 243.94 -4.14 -38.93 By element: Atomic # 1 Polarization: -0.21 SS G_CDS: -1.59 Total: -1.79 kcal Atomic # 6 Polarization: -0.22 SS G_CDS: -1.44 Total: -1.66 kcal Atomic # 7 Polarization: -33.21 SS G_CDS: 0.67 Total: -32.54 kcal Atomic # 8 Polarization: -21.00 SS G_CDS: -0.48 Total: -21.48 kcal Atomic # 9 Polarization: -1.72 SS G_CDS: 0.04 Total: -1.68 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 3.68 Total: 3.68 kcal Total: -34.78 -4.14 -38.93 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000795897329.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.270 kcal (2) G-P(sol) polarization free energy of solvation -34.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds