Wall clock time and date at job start Mon Mar 30 2020 03:06:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47208 * 179.97438 * 2 1 4 4 N 1.46498 * 109.46772 * 204.84732 * 3 2 1 5 5 C 1.34774 * 120.00131 * 274.45423 * 4 3 2 6 6 O 1.21687 * 120.00477 * 3.99155 * 5 4 3 7 7 C 1.46383 * 120.00034 * 183.98405 * 5 4 3 8 8 H 1.07997 * 119.99827 * 353.22440 * 7 5 4 9 9 C 1.40039 * 119.99867 * 173.21956 * 7 5 4 10 10 N 1.30674 * 120.00229 * 0.02562 * 9 7 5 11 11 Si 1.86799 * 120.00029 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.47144 * 0.02562 * 11 9 7 13 13 H 1.48505 * 109.47143 * 119.99706 * 11 9 7 14 14 H 1.48500 * 109.47423 * 240.00146 * 11 9 7 15 15 C 1.46498 * 119.99931 * 94.46078 * 4 3 2 16 16 C 1.53042 * 113.15399 * 298.14456 * 15 4 3 17 17 S 1.81425 * 89.93629 * 148.12648 * 16 15 4 18 18 C 1.53049 * 113.15134 * 38.51777 * 15 4 3 19 19 H 4.40641 * 5.51429 * 180.02562 * 4 1 2 20 20 H 1.09000 * 109.46910 * 84.85193 * 3 2 1 21 21 H 1.08997 * 109.47097 * 324.84806 * 3 2 1 22 22 H 0.97006 * 120.00169 * 180.02562 * 10 9 7 23 23 H 1.08995 * 112.53028 * 168.32884 * 15 4 3 24 24 H 1.09004 * 113.14877 * 263.40807 * 16 15 4 25 25 H 1.09000 * 113.14482 * 32.84664 * 16 15 4 26 26 H 1.08997 * 113.14503 * 327.10849 * 18 15 4 27 27 H 1.08994 * 113.15143 * 96.55581 * 18 15 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1337 1.2542 0.5804 5 6 3.2724 2.3472 -0.1959 6 8 2.9244 2.3139 -1.3614 7 6 3.8415 3.5746 0.3632 8 1 4.0486 3.6407 1.4211 9 6 4.1175 4.6629 -0.4738 10 7 3.8665 4.5830 -1.7537 11 14 4.8444 6.2289 0.2394 12 1 5.0335 6.0649 1.7032 13 1 6.1560 6.5022 -0.4010 14 1 3.9221 7.3642 -0.0168 15 6 3.4708 1.3197 2.0046 16 6 2.2759 1.0409 2.9192 17 16 3.3899 0.3021 4.1459 18 6 4.1562 0.0519 2.5196 19 1 -1.0502 -0.0004 0.0000 20 1 3.0094 -0.0914 -1.0235 21 1 3.0097 -0.8394 0.5917 22 1 4.0580 5.3368 -2.3335 23 1 4.0064 2.2325 2.2654 24 1 1.7879 1.9483 3.2752 25 1 1.5700 0.3263 2.4961 26 1 3.8130 -0.8539 2.0197 27 1 5.2431 0.1305 2.5402 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000912365988.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:51 Heat of formation + Delta-G solvation = 51.008552 kcal Electronic energy + Delta-G solvation = -13401.871356 eV Core-core repulsion = 11060.912207 eV Total energy + Delta-G solvation = -2340.959149 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.056 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -38.65662 -35.78641 -33.41410 -32.50676 -31.03405 -27.77987 -25.99473 -25.26398 -21.40376 -19.80405 -17.65131 -17.33526 -15.90499 -15.82058 -14.83537 -14.61970 -14.34040 -13.83522 -13.00331 -12.71411 -12.44216 -12.26738 -11.85033 -11.77664 -11.28656 -11.09017 -10.60901 -10.35659 -10.32966 -10.25348 -9.79243 -9.57217 -8.96716 -7.78481 -7.69330 -7.56915 -6.31959 -4.78276 2.01453 2.16157 3.07398 3.14542 3.18955 3.23919 3.35848 4.02968 4.37983 4.45622 4.77919 4.97792 5.15620 5.23297 5.46461 5.66955 5.70576 5.84303 5.97276 6.21921 6.32117 6.45867 7.28185 7.34073 7.91143 8.12297 8.15601 8.90012 9.18208 10.41048 10.60540 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.024755 B = 0.010516 C = 0.008051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1130.798171 B = 2661.882520 C = 3476.786866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.172 4.172 3 C 0.218 3.782 4 N -0.621 5.621 5 C 0.557 3.443 6 O -0.564 6.564 7 C -0.542 4.542 8 H 0.075 0.925 9 C 0.088 3.912 10 N -0.765 5.765 11 Si 0.907 3.093 12 H -0.262 1.262 13 H -0.275 1.275 14 H -0.275 1.275 15 C 0.162 3.838 16 C -0.095 4.095 17 S -0.312 6.312 18 C -0.098 4.098 19 H 0.210 0.790 20 H 0.098 0.902 21 H 0.084 0.916 22 H 0.270 0.730 23 H 0.143 0.857 24 H 0.095 0.905 25 H 0.101 0.899 26 H 0.103 0.897 27 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.441 -6.095 6.974 9.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C -0.174 4.174 3 C 0.095 3.905 4 N -0.357 5.357 5 C 0.363 3.637 6 O -0.445 6.445 7 C -0.578 4.578 8 H 0.093 0.907 9 C -0.132 4.132 10 N -0.393 5.393 11 Si 0.731 3.269 12 H -0.185 1.185 13 H -0.200 1.200 14 H -0.201 1.201 15 C 0.054 3.946 16 C -0.245 4.245 17 S -0.087 6.087 18 C -0.247 4.247 19 H 0.227 0.773 20 H 0.116 0.884 21 H 0.102 0.898 22 H 0.081 0.919 23 H 0.161 0.839 24 H 0.114 0.886 25 H 0.120 0.880 26 H 0.121 0.879 27 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -0.421 -6.245 7.521 9.785 hybrid contribution -0.174 0.844 -0.603 1.052 sum -0.594 -5.401 6.918 8.797 Atomic orbital electron populations 1.24722 0.95780 1.01512 1.02713 1.24067 0.95369 0.99246 0.98726 1.18146 0.83068 0.88618 1.00655 1.48334 1.69229 1.10827 1.07324 1.18376 0.78369 0.81948 0.84964 1.90632 1.53514 1.82935 1.17408 1.20991 1.44508 0.97006 0.95336 0.90714 1.25724 0.93654 0.99461 0.94396 1.70007 1.34827 1.30319 1.04149 0.86313 0.79002 0.81410 0.80138 1.18530 1.20041 1.20075 1.22455 0.91832 0.98099 0.82263 1.25196 1.01909 1.03568 0.93877 1.88686 1.29902 1.78196 1.11946 1.25087 1.04997 1.03256 0.91406 0.77331 0.88419 0.89815 0.91921 0.83940 0.88648 0.88039 0.87872 0.88255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.23 -3.89 19.25 29.55 0.57 -3.32 15 2 C -0.17 -3.24 12.20 -37.12 -0.45 -3.69 15 3 C 0.22 4.02 5.38 -6.83 -0.04 3.98 15 4 N -0.62 -13.02 2.63 -182.82 -0.48 -13.50 15 5 C 0.56 14.91 7.54 -12.98 -0.10 14.82 15 6 O -0.56 -17.43 14.75 5.20 0.08 -17.36 15 7 C -0.54 -14.33 8.83 -35.63 -0.31 -14.65 15 8 H 0.07 1.79 5.71 -52.49 -0.30 1.49 15 9 C 0.09 2.34 5.50 -17.37 -0.10 2.25 15 10 N -0.76 -22.01 11.85 55.55 0.66 -21.36 15 11 Si 0.91 19.28 29.56 -169.99 -5.02 14.26 15 12 H -0.26 -5.34 7.11 56.52 0.40 -4.94 15 13 H -0.28 -5.74 7.11 56.52 0.40 -5.34 15 14 H -0.28 -5.81 7.11 56.52 0.40 -5.41 15 15 C 0.16 2.83 3.75 -67.88 -0.25 2.57 15 16 C -0.10 -1.52 7.53 37.18 0.28 -1.24 15 17 S -0.31 -4.74 24.80 -107.50 -2.67 -7.41 15 18 C -0.10 -1.41 7.41 37.18 0.28 -1.13 15 19 H 0.21 2.72 7.80 -54.08 -0.42 2.29 15 20 H 0.10 1.93 7.62 -51.93 -0.40 1.54 15 21 H 0.08 1.22 5.53 -51.93 -0.29 0.93 15 22 H 0.27 7.05 8.29 -40.82 -0.34 6.71 15 23 H 0.14 2.63 5.55 -51.93 -0.29 2.35 15 24 H 0.09 1.51 8.14 -51.93 -0.42 1.08 15 25 H 0.10 1.62 6.51 -51.93 -0.34 1.28 15 26 H 0.10 1.35 5.75 -51.93 -0.30 1.05 15 27 H 0.10 1.32 8.14 -51.93 -0.42 0.90 15 LS Contribution 251.36 15.07 3.79 3.79 Total: -1.00 -31.99 251.36 -6.08 -38.07 By element: Atomic # 1 Polarization: 6.24 SS G_CDS: -2.31 Total: 3.93 kcal Atomic # 6 Polarization: -0.30 SS G_CDS: -0.13 Total: -0.43 kcal Atomic # 7 Polarization: -35.03 SS G_CDS: 0.18 Total: -34.85 kcal Atomic # 8 Polarization: -17.43 SS G_CDS: 0.08 Total: -17.36 kcal Atomic # 14 Polarization: 19.28 SS G_CDS: -5.02 Total: 14.26 kcal Atomic # 16 Polarization: -4.74 SS G_CDS: -2.67 Total: -7.41 kcal Total LS contribution 3.79 Total: 3.79 kcal Total: -31.99 -6.08 -38.07 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000912365988.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.082 kcal (2) G-P(sol) polarization free energy of solvation -31.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.074 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds