Wall clock time and date at job start Mon Mar 30 2020 02:52:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86795 * 119.99679 * 2 1 4 4 H 1.48496 * 109.47431 * 239.99973 * 3 2 1 5 5 H 1.48502 * 109.47365 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47278 * 120.00079 * 3 2 1 7 7 C 1.37871 * 120.00440 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00184 * 179.97438 * 7 2 1 9 9 C 1.50709 * 119.99798 * 359.97438 * 7 2 1 10 10 H 1.09001 * 109.46975 * 60.00249 * 9 7 2 11 11 O 1.42897 * 109.47306 * 300.00184 * 9 7 2 12 12 C 1.50701 * 109.46867 * 179.97438 * 9 7 2 13 13 C 1.33641 * 122.74808 * 84.96414 * 12 9 7 14 14 S 1.76193 * 107.92605 * 180.02562 * 13 12 9 15 15 C 1.70974 * 90.28329 * 0.02562 * 14 13 12 16 16 C 1.50703 * 124.91905 * 180.02562 * 15 14 13 17 17 C 1.52997 * 117.49514 * 8.74279 * 16 15 14 18 18 C 1.52998 * 117.49719 * 300.08397 * 16 15 14 19 19 N 1.29034 * 110.16586 * 359.97438 * 15 14 13 20 20 H 0.96991 * 120.00101 * 359.97438 * 1 2 3 21 21 H 0.96700 * 113.99969 * 300.00171 * 11 9 7 22 22 H 1.08002 * 126.03436 * 359.97438 * 13 12 9 23 23 H 1.09000 * 115.54903 * 154.41562 * 16 15 14 24 24 H 1.09000 * 117.50285 * 0.02562 * 17 16 15 25 25 H 1.09005 * 117.49492 * 145.02724 * 17 16 15 26 26 H 1.08999 * 117.50251 * 214.98045 * 18 16 15 27 27 H 1.09010 * 117.49614 * 359.97438 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6965 -1.2124 5 1 1.2840 2.7465 0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 1 0.6242 -2.5567 -0.8903 11 8 0.4300 -2.5752 1.1665 12 6 2.2305 -3.6445 -0.0018 13 6 2.7762 -4.1303 1.1172 14 16 3.8533 -5.4499 0.6667 15 6 3.4635 -5.2167 -0.9816 16 6 4.0232 -6.0258 -2.1232 17 6 4.8501 -7.2643 -1.7725 18 6 5.5402 -6.0129 -2.3210 19 7 2.6198 -4.2484 -1.1064 20 1 -0.4850 0.8400 0.0004 21 1 0.9224 -2.5300 1.9975 22 1 2.5904 -3.7760 2.1204 23 1 3.3996 -6.0731 -3.0159 24 1 4.9890 -7.4942 -0.7161 25 1 4.7709 -8.1264 -2.4349 26 1 5.9148 -6.0522 -3.3439 27 1 6.1335 -5.4189 -1.6256 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001535651718.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:53 Heat of formation + Delta-G solvation = 16.974554 kcal Electronic energy + Delta-G solvation = -12953.557181 eV Core-core repulsion = 10611.122206 eV Total energy + Delta-G solvation = -2342.434974 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.056 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.38468 -37.19547 -35.30810 -32.21023 -29.81186 -27.06476 -25.23431 -23.18114 -22.51261 -20.71461 -19.06442 -17.41152 -16.90951 -15.84232 -15.09730 -14.63832 -14.40886 -13.82663 -13.21805 -12.97091 -12.72282 -12.03216 -11.77189 -11.53046 -11.17253 -10.94458 -10.91071 -10.66977 -10.57431 -10.19586 -9.39897 -9.04838 -8.85150 -8.67880 -8.45950 -7.92104 -6.05833 -4.24497 1.25511 1.85853 2.25824 3.27997 3.32503 3.34100 3.44450 3.88823 4.23707 4.38400 4.75242 4.90401 5.17005 5.27291 5.49515 5.59120 5.80533 5.86219 5.96470 6.03502 6.24356 6.30805 6.89131 7.53776 7.77491 8.05018 8.47615 8.76044 9.23082 9.49753 10.98182 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.039961 B = 0.007449 C = 0.006935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 700.512003 B = 3757.956448 C = 4036.346136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.858 5.858 2 C 0.081 3.919 3 Si 0.896 3.104 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.560 4.560 8 H 0.056 0.944 9 C 0.293 3.707 10 H 0.078 0.922 11 O -0.555 6.555 12 C 0.083 3.917 13 C -0.260 4.260 14 S 0.058 5.942 15 C 0.071 3.929 16 C -0.077 4.077 17 C -0.172 4.172 18 C -0.162 4.162 19 N -0.454 5.454 20 H 0.263 0.737 21 H 0.346 0.654 22 H 0.172 0.828 23 H 0.130 0.870 24 H 0.098 0.902 25 H 0.105 0.895 26 H 0.104 0.896 27 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.241 -11.580 -0.547 14.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.493 5.493 2 C -0.126 4.126 3 Si 0.723 3.277 4 H -0.200 1.200 5 H -0.210 1.210 6 H -0.201 1.201 7 C -0.598 4.598 8 H 0.074 0.926 9 C 0.233 3.767 10 H 0.096 0.904 11 O -0.356 6.356 12 C -0.047 4.047 13 C -0.398 4.398 14 S 0.311 5.689 15 C -0.207 4.207 16 C -0.099 4.099 17 C -0.210 4.210 18 C -0.201 4.201 19 N -0.169 5.169 20 H 0.073 0.927 21 H 0.190 0.810 22 H 0.189 0.811 23 H 0.148 0.852 24 H 0.116 0.884 25 H 0.124 0.876 26 H 0.122 0.878 27 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 9.005 -12.033 -0.954 15.060 hybrid contribution 0.389 1.732 0.416 1.823 sum 9.394 -10.301 -0.538 13.952 Atomic orbital electron populations 1.70059 1.05922 1.26881 1.46462 1.25022 0.94778 0.99160 0.93644 0.86616 0.79641 0.82643 0.78810 1.20030 1.21027 1.20069 1.21380 0.93067 0.90231 1.55145 0.92592 1.18088 0.86064 0.85749 0.86826 0.90405 1.86658 1.37641 1.96094 1.15250 1.22082 0.99133 0.98025 0.85464 1.26575 1.05709 1.03076 1.04393 1.83356 1.45982 1.34918 1.04646 1.26039 0.99898 0.98636 0.96116 1.20345 0.94142 0.98619 0.96797 1.23122 1.03425 0.92039 1.02410 1.23115 0.93333 1.00643 1.03015 1.65996 1.11854 1.06751 1.32320 0.92668 0.81009 0.81066 0.85213 0.88405 0.87630 0.87753 0.88329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.38 12.84 55.43 0.71 -24.67 15 2 C 0.08 2.28 5.40 -17.82 -0.10 2.18 15 3 Si 0.90 21.40 29.54 -169.99 -5.02 16.38 15 4 H -0.27 -6.54 7.11 56.52 0.40 -6.13 15 5 H -0.28 -6.69 7.11 56.52 0.40 -6.29 15 6 H -0.28 -6.44 7.11 56.52 0.40 -6.04 15 7 C -0.56 -15.80 8.75 -34.44 -0.30 -16.10 15 8 H 0.06 1.58 7.74 -52.49 -0.41 1.17 15 9 C 0.29 7.84 3.31 -29.03 -0.10 7.74 15 10 H 0.08 2.31 8.14 -51.93 -0.42 1.89 15 11 O -0.55 -14.46 12.56 -35.23 -0.44 -14.90 15 12 C 0.08 1.93 5.79 -84.23 -0.49 1.45 15 13 C -0.26 -5.12 10.55 29.12 0.31 -4.81 15 14 S 0.06 0.93 21.94 -107.50 -2.36 -1.43 15 15 C 0.07 1.28 7.04 -13.45 -0.09 1.19 15 16 C -0.08 -1.06 6.33 -91.77 -0.58 -1.64 15 17 C -0.17 -1.76 10.02 -26.69 -0.27 -2.02 15 18 C -0.16 -1.78 10.24 -26.69 -0.27 -2.05 15 19 N -0.45 -10.14 10.53 -8.06 -0.08 -10.22 15 20 H 0.26 7.35 8.31 -40.82 -0.34 7.01 15 21 H 0.35 7.77 7.83 45.56 0.36 8.13 15 22 H 0.17 3.01 7.23 -52.49 -0.38 2.63 15 23 H 0.13 1.71 8.14 -51.93 -0.42 1.29 15 24 H 0.10 1.00 7.23 -51.93 -0.38 0.62 15 25 H 0.11 0.85 8.14 -51.93 -0.42 0.42 15 26 H 0.10 0.94 8.14 -51.93 -0.42 0.51 15 27 H 0.10 1.13 8.14 -51.92 -0.42 0.71 15 LS Contribution 255.18 15.07 3.85 3.85 Total: -1.00 -31.84 255.18 -7.29 -39.13 By element: Atomic # 1 Polarization: 7.98 SS G_CDS: -2.05 Total: 5.93 kcal Atomic # 6 Polarization: -12.18 SS G_CDS: -1.89 Total: -14.07 kcal Atomic # 7 Polarization: -35.52 SS G_CDS: 0.63 Total: -34.89 kcal Atomic # 8 Polarization: -14.46 SS G_CDS: -0.44 Total: -14.90 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Atomic # 16 Polarization: 0.93 SS G_CDS: -2.36 Total: -1.43 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -31.84 -7.29 -39.13 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001535651718.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.105 kcal (2) G-P(sol) polarization free energy of solvation -31.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.130 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds