Wall clock time and date at job start Mon Mar 30 2020 02:52:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86795 * 119.99679 * 2 1 4 4 H 1.48496 * 109.47431 * 239.99973 * 3 2 1 5 5 H 1.48502 * 109.47365 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47278 * 120.00079 * 3 2 1 7 7 C 1.37871 * 120.00440 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00184 * 179.97438 * 7 2 1 9 9 C 1.50709 * 119.99798 * 359.97438 * 7 2 1 10 10 H 1.09001 * 109.46975 * 60.00249 * 9 7 2 11 11 O 1.42897 * 109.47306 * 300.00184 * 9 7 2 12 12 C 1.50701 * 109.46867 * 179.97438 * 9 7 2 13 13 C 1.33641 * 122.74808 * 84.96414 * 12 9 7 14 14 S 1.76193 * 107.92605 * 180.02562 * 13 12 9 15 15 C 1.70974 * 90.28329 * 0.02562 * 14 13 12 16 16 C 1.50703 * 124.91905 * 180.02562 * 15 14 13 17 17 C 1.52997 * 117.49514 * 8.74279 * 16 15 14 18 18 C 1.52998 * 117.49719 * 300.08397 * 16 15 14 19 19 N 1.29034 * 110.16586 * 359.97438 * 15 14 13 20 20 H 0.96991 * 120.00101 * 359.97438 * 1 2 3 21 21 H 0.96700 * 113.99969 * 300.00171 * 11 9 7 22 22 H 1.08002 * 126.03436 * 359.97438 * 13 12 9 23 23 H 1.09000 * 115.54903 * 154.41562 * 16 15 14 24 24 H 1.09000 * 117.50285 * 0.02562 * 17 16 15 25 25 H 1.09005 * 117.49492 * 145.02724 * 17 16 15 26 26 H 1.08999 * 117.50251 * 214.98045 * 18 16 15 27 27 H 1.09010 * 117.49614 * 359.97438 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6965 -1.2124 5 1 1.2840 2.7465 0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 1 0.6242 -2.5567 -0.8903 11 8 0.4300 -2.5752 1.1665 12 6 2.2305 -3.6445 -0.0018 13 6 2.7762 -4.1303 1.1172 14 16 3.8533 -5.4499 0.6667 15 6 3.4635 -5.2167 -0.9816 16 6 4.0232 -6.0258 -2.1232 17 6 4.8501 -7.2643 -1.7725 18 6 5.5402 -6.0129 -2.3210 19 7 2.6198 -4.2484 -1.1064 20 1 -0.4850 0.8400 0.0004 21 1 0.9224 -2.5300 1.9975 22 1 2.5904 -3.7760 2.1204 23 1 3.3996 -6.0731 -3.0159 24 1 4.9890 -7.4942 -0.7161 25 1 4.7709 -8.1264 -2.4349 26 1 5.9148 -6.0522 -3.3439 27 1 6.1335 -5.4189 -1.6256 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001535651718.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:53 Heat of formation + Delta-G solvation = -6.386925 kcal Electronic energy + Delta-G solvation = -12954.570210 eV Core-core repulsion = 10611.122206 eV Total energy + Delta-G solvation = -2343.448004 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.056 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.92881 -38.33293 -37.17208 -34.37645 -31.44085 -29.03005 -26.73419 -25.00581 -23.32898 -22.02306 -20.63955 -19.29410 -18.62475 -17.20895 -16.73329 -16.60909 -15.73975 -15.21866 -14.96201 -14.78690 -14.33482 -13.57464 -13.18625 -13.09951 -12.81239 -12.77815 -12.38086 -12.17280 -11.76184 -11.49915 -11.34093 -10.81436 -10.62519 -10.43046 -10.23614 -9.44773 -8.20050 -6.48076 -0.18242 0.47740 0.77087 1.37353 1.40484 1.48931 1.88717 2.37101 2.85390 3.01508 3.13418 3.79965 3.99499 4.05421 4.20618 4.37147 4.44079 4.62941 4.73198 4.93457 5.06139 5.19509 5.21559 5.45016 5.58132 5.92613 6.59299 6.95298 7.21263 7.38582 8.84096 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.039961 B = 0.007449 C = 0.006935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 700.512003 B = 3757.956448 C = 4036.346136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.029 3.971 3 Si 0.968 3.032 4 H -0.272 1.272 5 H -0.277 1.277 6 H -0.263 1.263 7 C -0.574 4.574 8 H 0.050 0.950 9 C 0.298 3.702 10 H 0.029 0.971 11 O -0.568 6.568 12 C 0.051 3.949 13 C -0.274 4.274 14 S 0.156 5.844 15 C 0.066 3.934 16 C -0.116 4.116 17 C -0.144 4.144 18 C -0.152 4.152 19 N -0.509 5.509 20 H 0.266 0.734 21 H 0.360 0.640 22 H 0.186 0.814 23 H 0.128 0.872 24 H 0.101 0.899 25 H 0.135 0.865 26 H 0.127 0.873 27 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.774 -12.821 -0.134 17.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.174 4.174 3 Si 0.791 3.209 4 H -0.198 1.198 5 H -0.202 1.202 6 H -0.187 1.187 7 C -0.612 4.612 8 H 0.069 0.931 9 C 0.237 3.763 10 H 0.047 0.953 11 O -0.372 6.372 12 C -0.079 4.079 13 C -0.413 4.413 14 S 0.411 5.589 15 C -0.212 4.212 16 C -0.138 4.138 17 C -0.182 4.182 18 C -0.191 4.191 19 N -0.225 5.225 20 H 0.075 0.925 21 H 0.206 0.794 22 H 0.204 0.796 23 H 0.146 0.854 24 H 0.120 0.880 25 H 0.153 0.847 26 H 0.145 0.855 27 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 11.559 -13.297 -0.526 17.627 hybrid contribution -0.339 1.956 0.283 2.005 sum 11.220 -11.342 -0.242 15.956 Atomic orbital electron populations 1.70192 1.07629 1.27951 1.47500 1.25918 0.95617 1.02916 0.92931 0.85495 0.78354 0.77903 0.79145 1.19759 1.20232 1.18747 1.21615 0.92853 0.91488 1.55224 0.93132 1.17593 0.85917 0.87505 0.85255 0.95318 1.86566 1.38374 1.96287 1.15938 1.21477 1.00448 0.98633 0.87346 1.26846 1.05992 1.04252 1.04165 1.82876 1.42905 1.31379 1.01748 1.26808 0.98223 0.97300 0.98832 1.20566 0.95926 1.01299 0.96008 1.23291 0.99825 0.91812 1.03271 1.23265 0.90626 1.00722 1.04458 1.65934 1.14605 1.09093 1.32864 0.92478 0.79368 0.79636 0.85385 0.88035 0.84700 0.85460 0.88785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -54.61 12.84 21.45 0.28 -54.34 15 2 C 0.03 1.69 5.40 84.65 0.46 2.14 15 3 Si 0.97 44.35 29.54 68.60 2.03 46.38 15 4 H -0.27 -12.28 7.11 99.48 0.71 -11.58 15 5 H -0.28 -12.27 7.11 99.48 0.71 -11.57 15 6 H -0.26 -11.45 7.11 99.48 0.71 -10.74 15 7 C -0.57 -33.42 8.75 25.60 0.22 -33.20 15 8 H 0.05 2.92 7.74 -2.91 -0.02 2.90 15 9 C 0.30 16.76 3.31 29.10 0.10 16.86 15 10 H 0.03 1.86 8.14 -2.39 -0.02 1.84 15 11 O -0.57 -30.84 12.56 -148.98 -1.87 -32.71 15 12 C 0.05 2.46 5.79 41.52 0.24 2.70 15 13 C -0.27 -10.67 10.55 66.78 0.70 -9.97 15 14 S 0.16 4.64 21.94 -56.49 -1.24 3.40 15 15 C 0.07 2.30 7.04 88.52 0.62 2.92 15 16 C -0.12 -2.96 6.33 -11.54 -0.07 -3.03 15 17 C -0.14 -2.37 10.02 30.62 0.31 -2.06 15 18 C -0.15 -2.83 10.24 30.62 0.31 -2.52 15 19 N -0.51 -23.31 10.53 -179.40 -1.89 -25.20 15 20 H 0.27 15.19 8.31 -92.71 -0.77 14.42 15 21 H 0.36 16.66 7.83 -74.06 -0.58 16.08 15 22 H 0.19 6.38 7.23 -2.91 -0.02 6.36 15 23 H 0.13 3.27 8.14 -2.39 -0.02 3.25 15 24 H 0.10 1.61 7.23 -2.39 -0.02 1.59 15 25 H 0.13 1.49 8.14 -2.38 -0.02 1.47 15 26 H 0.13 1.80 8.14 -2.39 -0.02 1.78 15 27 H 0.09 1.86 8.14 -2.38 -0.02 1.84 15 Total: -1.00 -71.77 255.18 0.81 -70.96 By element: Atomic # 1 Polarization: 17.04 SS G_CDS: 0.61 Total: 17.65 kcal Atomic # 6 Polarization: -29.04 SS G_CDS: 2.89 Total: -26.15 kcal Atomic # 7 Polarization: -77.92 SS G_CDS: -1.61 Total: -79.54 kcal Atomic # 8 Polarization: -30.84 SS G_CDS: -1.87 Total: -32.71 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 2.03 Total: 46.38 kcal Atomic # 16 Polarization: 4.64 SS G_CDS: -1.24 Total: 3.40 kcal Total: -71.77 0.81 -70.96 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001535651718.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.572 kcal (2) G-P(sol) polarization free energy of solvation -71.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.959 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds