Wall clock time and date at job start Mon Mar 30 2020 02:56:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48503 * 109.46845 * 0.02562 * 3 2 1 5 5 H 1.48503 * 109.47399 * 119.99834 * 3 2 1 6 6 H 1.48498 * 109.47295 * 240.00440 * 3 2 1 7 7 C 1.37879 * 120.00338 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00409 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99398 * 0.02562 * 7 2 1 10 10 H 1.09000 * 109.46830 * 299.99601 * 9 7 2 11 11 O 1.42898 * 109.47644 * 59.99870 * 9 7 2 12 12 C 1.50699 * 109.46824 * 180.02562 * 9 7 2 13 13 S 1.76199 * 126.03441 * 284.68545 * 12 9 7 14 14 C 1.70979 * 90.28594 * 179.97438 * 13 12 9 15 15 N 1.29035 * 110.16081 * 0.34480 * 14 13 12 16 16 C 1.31780 * 117.12701 * 359.72555 * 15 14 13 17 17 C 1.50694 * 122.74893 * 179.97438 * 16 15 14 18 18 C 1.52997 * 117.49914 * 8.74574 * 17 16 15 19 19 C 1.53007 * 117.49798 * 300.08751 * 17 16 15 20 20 H 0.97000 * 119.99706 * 179.97438 * 1 2 3 21 21 H 0.96701 * 113.99881 * 59.99544 * 11 9 7 22 22 H 1.07995 * 124.92273 * 180.02562 * 14 13 12 23 23 H 1.09000 * 115.54910 * 154.42063 * 17 16 15 24 24 H 1.08996 * 117.50093 * 0.02562 * 18 17 16 25 25 H 1.09008 * 117.49958 * 145.02015 * 18 17 16 26 26 H 1.09006 * 117.49813 * 214.97955 * 19 17 16 27 27 H 1.08998 * 117.49961 * 359.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7464 0.0006 5 1 3.1030 1.6964 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 1 0.6241 -2.5574 0.8881 11 8 0.4299 -2.5741 -1.1688 12 6 2.2303 -3.6446 -0.0015 13 16 3.1795 -4.1971 -1.3793 14 6 3.8886 -5.4163 -0.4128 15 7 3.4176 -5.3625 0.7873 16 6 2.5272 -4.4251 1.0419 17 6 1.8949 -4.2480 2.3983 18 6 2.4658 -5.0689 3.5564 19 6 1.0992 -5.4252 2.9659 20 1 -0.4850 -0.8401 -0.0004 21 1 0.9223 -2.5282 -1.9998 22 1 4.6204 -6.1314 -0.7582 23 1 1.5362 -3.2434 2.6223 24 1 3.2989 -5.7367 3.3373 25 1 2.4823 -4.6045 4.5424 26 1 0.2172 -5.1950 3.5637 27 1 1.0327 -6.3275 2.3580 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001535689409.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:54 Heat of formation + Delta-G solvation = -11.902258 kcal Electronic energy + Delta-G solvation = -13305.329459 eV Core-core repulsion = 10961.642292 eV Total energy + Delta-G solvation = -2343.687167 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.056 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.08157 -38.11354 -37.39696 -34.39696 -32.14119 -28.39324 -26.22541 -24.10806 -23.84548 -23.26825 -20.06603 -19.52958 -18.69031 -17.79916 -16.63414 -15.78033 -15.59553 -15.48823 -15.27400 -14.97693 -14.53323 -14.10289 -13.33482 -12.67351 -12.54978 -12.42661 -12.21162 -11.97265 -11.88134 -11.73555 -11.31838 -10.74751 -10.70246 -10.42970 -10.06119 -9.45994 -8.66523 -6.54640 -0.15804 0.46596 0.86504 1.52182 1.58641 1.73418 1.79173 2.52443 2.98986 3.09666 3.30956 3.77137 3.84867 3.91330 4.14043 4.22511 4.37458 4.65006 4.69509 4.85558 5.08493 5.20793 5.23704 5.29116 5.69507 6.02487 6.47727 6.74395 6.92826 7.38213 8.69114 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.026719 B = 0.010274 C = 0.008860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1047.701769 B = 2724.564493 C = 3159.459926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C -0.009 4.009 3 Si 1.113 2.887 4 H -0.282 1.282 5 H -0.273 1.273 6 H -0.268 1.268 7 C -0.646 4.646 8 H 0.046 0.954 9 C 0.285 3.715 10 H 0.047 0.953 11 O -0.584 6.584 12 C -0.223 4.223 13 S 0.139 5.861 14 C 0.009 3.991 15 N -0.480 5.480 16 C 0.061 3.939 17 C -0.116 4.116 18 C -0.141 4.141 19 C -0.153 4.153 20 H 0.269 0.731 21 H 0.362 0.638 22 H 0.240 0.760 23 H 0.099 0.901 24 H 0.101 0.899 25 H 0.114 0.886 26 H 0.113 0.887 27 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.050 -9.220 0.654 11.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.212 4.212 3 Si 0.934 3.066 4 H -0.207 1.207 5 H -0.198 1.198 6 H -0.193 1.193 7 C -0.684 4.684 8 H 0.064 0.936 9 C 0.226 3.774 10 H 0.064 0.936 11 O -0.389 6.389 12 C -0.345 4.345 13 S 0.392 5.608 14 C -0.289 4.289 15 N -0.194 5.194 16 C -0.069 4.069 17 C -0.137 4.137 18 C -0.178 4.178 19 C -0.191 4.191 20 H 0.079 0.921 21 H 0.209 0.791 22 H 0.256 0.744 23 H 0.117 0.883 24 H 0.119 0.881 25 H 0.132 0.868 26 H 0.131 0.869 27 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 6.699 -7.792 0.431 10.285 hybrid contribution 0.083 -1.433 0.340 1.475 sum 6.782 -9.226 0.771 11.476 Atomic orbital electron populations 1.70788 1.07864 1.31297 1.44802 1.27269 0.96420 1.06099 0.91415 0.82997 0.74222 0.71338 0.78004 1.20683 1.19800 1.19258 1.22584 0.94235 0.92559 1.58992 0.93588 1.17814 0.86025 0.88271 0.85301 0.93588 1.86498 1.39546 1.96430 1.16437 1.26836 1.06181 1.04258 0.97175 1.83525 1.35236 1.27261 1.14742 1.28858 1.05120 1.03306 0.91616 1.66010 1.11167 1.22038 1.20195 1.19354 0.97917 0.93443 0.96194 1.20461 1.06140 0.97328 0.89780 1.22962 0.97009 1.01688 0.96169 1.22990 0.95993 0.97233 1.02842 0.92072 0.79103 0.74423 0.88275 0.88100 0.86786 0.86884 0.89211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.14 13.53 21.45 0.29 -54.85 15 2 C -0.01 -0.50 5.40 84.66 0.46 -0.05 15 3 Si 1.11 48.98 29.90 68.60 2.05 51.03 15 4 H -0.28 -12.38 7.11 99.48 0.71 -11.67 15 5 H -0.27 -11.30 7.11 99.48 0.71 -10.59 15 6 H -0.27 -10.90 7.11 99.48 0.71 -10.20 15 7 C -0.65 -35.64 8.75 25.60 0.22 -35.41 15 8 H 0.05 2.55 7.74 -2.91 -0.02 2.52 15 9 C 0.29 14.68 2.69 29.10 0.08 14.76 15 10 H 0.05 2.60 6.64 -2.39 -0.02 2.58 15 11 O -0.58 -29.94 11.99 -148.98 -1.79 -31.73 15 12 C -0.22 -9.78 5.44 24.64 0.13 -9.65 15 13 S 0.14 4.69 22.75 -56.49 -1.29 3.40 15 14 C 0.01 0.26 12.23 130.65 1.60 1.86 15 15 N -0.48 -17.18 9.83 -191.55 -1.88 -19.07 15 16 C 0.06 2.48 6.36 41.52 0.26 2.74 15 17 C -0.12 -4.36 5.54 -11.54 -0.06 -4.43 15 18 C -0.14 -4.13 10.09 30.62 0.31 -3.82 15 19 C -0.15 -4.61 10.24 30.62 0.31 -4.30 15 20 H 0.27 16.74 6.47 -92.71 -0.60 16.14 15 21 H 0.36 16.67 8.60 -74.06 -0.64 16.03 15 22 H 0.24 4.45 8.06 -2.91 -0.02 4.43 15 23 H 0.10 4.13 7.23 -2.39 -0.02 4.11 15 24 H 0.10 2.97 7.73 -2.39 -0.02 2.95 15 25 H 0.11 2.81 8.14 -2.38 -0.02 2.79 15 26 H 0.11 2.95 8.14 -2.38 -0.02 2.94 15 27 H 0.09 2.72 8.14 -2.39 -0.02 2.70 15 Total: -1.00 -66.20 252.95 1.43 -64.77 By element: Atomic # 1 Polarization: 24.01 SS G_CDS: 0.73 Total: 24.73 kcal Atomic # 6 Polarization: -41.61 SS G_CDS: 3.31 Total: -38.30 kcal Atomic # 7 Polarization: -72.32 SS G_CDS: -1.59 Total: -73.92 kcal Atomic # 8 Polarization: -29.94 SS G_CDS: -1.79 Total: -31.73 kcal Atomic # 14 Polarization: 48.98 SS G_CDS: 2.05 Total: 51.03 kcal Atomic # 16 Polarization: 4.69 SS G_CDS: -1.29 Total: 3.40 kcal Total: -66.20 1.43 -64.77 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001535689409.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.872 kcal (2) G-P(sol) polarization free energy of solvation -66.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds