Wall clock time and date at job start Mon Mar 30 2020 02:50:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31375 * 1 3 3 Si 1.86800 * 120.00086 * 2 1 4 4 H 1.48502 * 109.47084 * 240.00252 * 3 2 1 5 5 H 1.48500 * 109.46790 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47204 * 119.99848 * 3 2 1 7 7 C 1.39026 * 120.00167 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00113 * 180.02562 * 7 2 1 9 9 N 1.36906 * 119.99573 * 359.97438 * 7 2 1 10 10 C 1.34775 * 119.99787 * 180.02562 * 9 7 2 11 11 O 1.21630 * 120.00130 * 0.02562 * 10 9 7 12 12 C 1.47430 * 120.00460 * 180.02562 * 10 9 7 13 13 C 1.39821 * 120.18141 * 0.02602 * 12 10 9 14 14 C 1.37753 * 119.94118 * 179.97438 * 13 12 10 15 15 C 1.38570 * 120.32181 * 0.02562 * 14 13 12 16 16 C 1.38228 * 120.37957 * 359.73964 * 15 14 13 17 17 F 1.35100 * 119.97474 * 180.25346 * 16 15 14 18 18 C 1.38896 * 120.04923 * 0.51948 * 16 15 14 19 19 O 1.35709 * 120.16214 * 179.76492 * 18 16 15 20 20 H 0.97003 * 120.00289 * 359.97438 * 1 2 3 21 21 H 0.96999 * 120.00670 * 0.02562 * 9 7 2 22 22 H 1.07994 * 120.02902 * 359.95297 * 13 12 10 23 23 H 1.07990 * 119.83548 * 180.02562 * 14 13 12 24 24 H 1.08001 * 119.80488 * 180.02562 * 15 14 13 25 25 H 0.96700 * 114.00111 * 269.72040 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3137 0.0000 0.0000 3 14 2.2478 1.6177 0.0000 4 1 3.1015 1.6964 -1.2125 5 1 1.2827 2.7464 -0.0006 6 1 3.1015 1.6964 1.2125 7 6 2.0089 -1.2040 -0.0005 8 1 3.0889 -1.2040 -0.0001 9 7 1.3243 -2.3896 -0.0005 10 6 1.9982 -3.5568 -0.0005 11 8 3.2145 -3.5568 -0.0001 12 6 1.2611 -4.8336 -0.0011 13 6 -0.1371 -4.8381 -0.0022 14 6 -0.8207 -6.0340 -0.0033 15 6 -0.1295 -7.2350 -0.0027 16 6 1.2527 -7.2461 -0.0065 17 9 1.9183 -8.4217 -0.0111 18 6 1.9578 -6.0494 0.0000 19 8 3.3149 -6.0576 0.0011 20 1 -0.4851 0.8400 0.0004 21 1 0.3543 -2.3897 -0.0005 22 1 -0.6805 -3.9049 -0.0019 23 1 -1.9006 -6.0355 -0.0045 24 1 -0.6740 -8.1678 -0.0040 25 1 3.7075 -6.0600 0.8848 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001611113893.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:11 Heat of formation + Delta-G solvation = -122.055520 kcal Electronic energy + Delta-G solvation = -14816.717792 eV Core-core repulsion = 11902.040845 eV Total energy + Delta-G solvation = -2914.676947 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 225.059 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -49.93810 -41.11601 -39.16726 -37.74577 -36.03216 -33.52245 -31.80229 -30.66267 -27.28548 -24.79529 -23.51292 -21.52316 -20.30059 -19.40138 -18.69298 -17.57054 -17.07950 -17.03037 -16.58976 -16.15678 -15.77696 -15.50212 -15.06801 -14.79026 -14.45774 -13.57184 -13.36471 -13.11802 -12.90638 -12.74123 -12.47464 -12.12962 -11.75515 -11.59259 -10.41840 -10.14860 -9.94889 -9.67558 -8.57211 -6.01121 -0.27147 0.04046 1.40899 1.41558 1.52448 1.96656 2.24849 2.62407 2.81371 3.10124 3.25579 3.41491 3.86058 3.97318 4.11875 4.29901 4.67211 4.86459 5.02823 5.16141 5.28826 5.34070 5.72278 5.90610 6.48450 6.70240 7.01392 7.40933 7.99278 8.59666 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.051689 B = 0.007048 C = 0.006219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 541.571688 B = 3971.809880 C = 4500.961926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C -0.006 4.006 3 Si 0.998 3.002 4 H -0.272 1.272 5 H -0.265 1.265 6 H -0.270 1.270 7 C -0.337 4.337 8 H 0.083 0.917 9 N -0.549 5.549 10 C 0.461 3.539 11 O -0.621 6.621 12 C -0.132 4.132 13 C -0.096 4.096 14 C -0.086 4.086 15 C -0.112 4.112 16 C 0.054 3.946 17 F -0.138 7.138 18 C 0.096 3.904 19 O -0.488 6.488 20 H 0.284 0.716 21 H 0.399 0.601 22 H 0.140 0.860 23 H 0.185 0.815 24 H 0.181 0.819 25 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.160 -10.402 1.727 12.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.208 4.208 3 Si 0.820 3.180 4 H -0.197 1.197 5 H -0.190 1.190 6 H -0.195 1.195 7 C -0.466 4.466 8 H 0.101 0.899 9 N -0.185 5.185 10 C 0.251 3.749 11 O -0.510 6.510 12 C -0.136 4.136 13 C -0.116 4.116 14 C -0.103 4.103 15 C -0.131 4.131 16 C 0.034 3.966 17 F -0.117 7.117 18 C 0.049 3.951 19 O -0.300 6.300 20 H 0.094 0.906 21 H 0.235 0.765 22 H 0.158 0.842 23 H 0.202 0.798 24 H 0.198 0.802 25 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges -5.540 -10.240 1.126 11.697 hybrid contribution 0.516 0.734 0.464 1.010 sum -5.024 -9.506 1.590 10.869 Atomic orbital electron populations 1.69621 1.06901 1.30072 1.48059 1.26138 0.96626 1.02539 0.95484 0.84920 0.77843 0.76094 0.79098 1.19709 1.18966 1.19469 1.19743 0.93076 0.83738 1.50077 0.89944 1.41864 1.09594 1.04508 1.62520 1.18214 0.87455 0.84249 0.85022 1.90596 1.14827 1.87677 1.57855 1.20446 0.95184 0.92459 1.05506 1.21613 0.91241 1.00953 0.97746 1.21375 1.02404 0.89305 0.97261 1.21601 0.90136 1.01824 0.99576 1.18117 0.91558 0.79575 1.07364 1.91468 1.81306 1.44627 1.94259 1.18670 0.84111 0.90574 1.01793 1.84729 1.14937 1.95943 1.34356 0.90649 0.76512 0.84229 0.79819 0.80193 0.74079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -47.16 13.05 21.68 0.28 -46.88 15 2 C -0.01 -0.32 5.50 84.95 0.47 0.15 15 3 Si 1.00 41.76 29.55 68.60 2.03 43.78 15 4 H -0.27 -11.36 7.11 99.48 0.71 -10.65 15 5 H -0.27 -10.31 7.11 99.48 0.71 -9.60 15 6 H -0.27 -11.16 7.11 99.48 0.71 -10.45 15 7 C -0.34 -19.14 9.68 84.09 0.81 -18.32 15 8 H 0.08 4.99 7.15 -2.91 -0.02 4.97 15 9 N -0.55 -28.80 5.23 -309.97 -1.62 -30.42 15 10 C 0.46 23.70 7.71 86.66 0.67 24.37 15 11 O -0.62 -36.43 14.73 16.81 0.25 -36.18 15 12 C -0.13 -5.29 5.89 -20.02 -0.12 -5.41 15 13 C -0.10 -2.94 9.54 22.54 0.21 -2.72 15 14 C -0.09 -1.82 10.02 22.23 0.22 -1.59 15 15 C -0.11 -2.41 10.01 22.35 0.22 -2.18 15 16 C 0.05 1.59 7.30 22.43 0.16 1.76 15 17 F -0.14 -4.10 17.11 44.97 0.77 -3.33 15 18 C 0.10 3.62 6.73 22.89 0.15 3.77 15 19 O -0.49 -19.70 11.44 -69.36 -0.79 -20.49 15 20 H 0.28 13.68 8.31 -92.71 -0.77 12.91 15 21 H 0.40 19.32 5.92 -92.71 -0.55 18.77 15 22 H 0.14 4.18 6.40 -2.91 -0.02 4.16 15 23 H 0.18 2.22 8.06 -2.92 -0.02 2.20 15 24 H 0.18 2.36 8.06 -2.91 -0.02 2.33 15 25 H 0.40 13.15 9.06 -74.06 -0.67 12.48 15 Total: -1.00 -70.37 237.76 3.77 -66.60 By element: Atomic # 1 Polarization: 27.07 SS G_CDS: 0.04 Total: 27.11 kcal Atomic # 6 Polarization: -3.00 SS G_CDS: 2.81 Total: -0.19 kcal Atomic # 7 Polarization: -75.97 SS G_CDS: -1.34 Total: -77.30 kcal Atomic # 8 Polarization: -56.13 SS G_CDS: -0.55 Total: -56.67 kcal Atomic # 9 Polarization: -4.10 SS G_CDS: 0.77 Total: -3.33 kcal Atomic # 14 Polarization: 41.76 SS G_CDS: 2.03 Total: 43.78 kcal Total: -70.37 3.77 -66.60 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001611113893.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.453 kcal (2) G-P(sol) polarization free energy of solvation -70.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds