Wall clock time and date at job start Mon Mar 30 2020 03:19:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30675 * 1 3 3 Si 1.86798 * 119.99497 * 2 1 4 4 H 1.48503 * 109.47180 * 274.98015 * 3 2 1 5 5 H 1.48499 * 109.47498 * 34.97922 * 3 2 1 6 6 H 1.48501 * 109.47114 * 154.98193 * 3 2 1 7 7 C 1.40047 * 120.00480 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99968 * 186.15716 * 7 2 1 9 9 C 1.46377 * 119.99564 * 6.15023 * 7 2 1 10 10 O 1.21686 * 120.00310 * 353.94180 * 9 7 2 11 11 N 1.34779 * 119.99461 * 173.94270 * 9 7 2 12 12 N 1.40102 * 119.99675 * 180.02562 * 11 9 7 13 13 C 1.34775 * 120.00249 * 179.97438 * 12 11 9 14 14 O 1.21627 * 119.99593 * 359.97438 * 13 12 11 15 15 C 1.47228 * 120.00299 * 180.02562 * 13 12 11 16 16 C 1.37010 * 127.19112 * 180.02562 * 15 13 12 17 17 N 1.33313 * 106.37421 * 179.97438 * 16 15 13 18 18 N 1.28509 * 109.44189 * 359.97438 * 17 16 15 19 19 N 1.28719 * 110.63692 * 0.02562 * 18 17 16 20 20 H 0.97004 * 126.03697 * 179.97438 * 19 18 17 21 21 H 0.97001 * 120.00394 * 0.02562 * 1 2 3 22 22 H 0.96993 * 120.00530 * 359.97438 * 11 9 7 23 23 H 0.96998 * 120.00295 * 359.97438 * 12 11 9 24 24 H 1.08010 * 126.81006 * 359.95449 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2406 1.6178 0.0000 4 1 2.3828 2.1073 -1.3948 5 1 1.4946 2.6201 0.8026 6 1 3.5869 1.4122 0.5921 7 6 2.0071 -1.2128 0.0005 8 1 3.0823 -1.2153 0.1009 9 6 1.2815 -2.4769 -0.1347 10 8 0.0647 -2.4828 -0.1367 11 7 1.9613 -3.6342 -0.2570 12 7 1.2669 -4.8441 -0.3870 13 6 1.9466 -6.0014 -0.5098 14 8 3.1629 -5.9954 -0.5083 15 6 1.2169 -7.2727 -0.6470 16 6 1.7544 -8.5260 -0.7798 17 7 0.7253 -9.3685 -0.8712 18 7 -0.3753 -8.7086 -0.8019 19 7 -0.1418 -7.4499 -0.6676 20 1 -0.8097 -6.7503 -0.5940 21 1 -0.4851 0.8400 -0.0004 22 1 2.9313 -3.6295 -0.2558 23 1 0.2970 -4.8488 -0.3886 24 1 2.8037 -8.7807 -0.8057 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001627298179.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:54 Heat of formation + Delta-G solvation = 24.459347 kcal Electronic energy + Delta-G solvation = -14543.984892 eV Core-core repulsion = 11687.874019 eV Total energy + Delta-G solvation = -2856.110873 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 225.065 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -44.50506 -40.96445 -39.17331 -36.19232 -34.80401 -34.59698 -32.98587 -31.58827 -28.34785 -25.58187 -24.07161 -22.64210 -22.46401 -20.80107 -19.04659 -18.54436 -17.81228 -17.55479 -17.13183 -16.14422 -16.10652 -15.72707 -15.29772 -14.77704 -14.61297 -13.40652 -13.31272 -12.89885 -12.71774 -12.50617 -12.12960 -12.03265 -11.91531 -11.64503 -10.98102 -10.74214 -10.19227 -9.16249 -8.43681 -6.97649 -0.30353 0.95399 1.11040 1.36699 1.42111 1.45883 1.61401 1.81729 2.25769 2.35997 2.98797 3.35440 3.46021 3.69446 3.87830 4.01489 4.89729 5.25680 5.32749 5.54762 5.85770 5.93816 6.18273 6.74532 6.90032 7.07456 7.17090 8.24217 8.51437 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.072729 B = 0.005524 C = 0.005147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 384.899082 B = 5067.360822 C = 5438.679468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.811 5.811 2 C 0.036 3.964 3 Si 1.002 2.998 4 H -0.263 1.263 5 H -0.272 1.272 6 H -0.248 1.248 7 C -0.557 4.557 8 H 0.096 0.904 9 C 0.542 3.458 10 O -0.619 6.619 11 N -0.552 5.552 12 N -0.504 5.504 13 C 0.591 3.409 14 O -0.553 6.553 15 C -0.056 4.056 16 C 0.043 3.957 17 N -0.290 5.290 18 N -0.051 5.051 19 N -0.356 5.356 20 H 0.465 0.535 21 H 0.280 0.720 22 H 0.423 0.577 23 H 0.425 0.575 24 H 0.228 0.772 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.589 -7.865 -1.014 8.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.439 5.439 2 C -0.182 4.182 3 Si 0.821 3.179 4 H -0.188 1.188 5 H -0.196 1.196 6 H -0.171 1.171 7 C -0.595 4.595 8 H 0.114 0.886 9 C 0.349 3.651 10 O -0.504 6.504 11 N -0.305 5.305 12 N -0.246 5.246 13 C 0.374 3.626 14 O -0.429 6.429 15 C -0.192 4.192 16 C -0.117 4.117 17 N -0.154 5.154 18 N -0.034 5.034 19 N -0.086 5.086 20 H 0.315 0.685 21 H 0.090 0.910 22 H 0.265 0.735 23 H 0.266 0.734 24 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges 1.401 -8.934 -1.128 9.113 hybrid contribution 0.364 1.878 0.138 1.918 sum 1.764 -7.056 -0.990 7.340 Atomic orbital electron populations 1.70121 1.09386 1.29633 1.34799 1.26917 0.95590 1.04668 0.90985 0.84919 0.78933 0.74758 0.79262 1.18776 1.19641 1.17135 1.21235 0.95713 0.88586 1.53930 0.88615 1.18917 0.87265 0.82014 0.76923 1.90573 1.15263 1.86251 1.58320 1.45531 1.08096 0.95361 1.81550 1.44510 1.09181 0.99029 1.71929 1.16801 0.86733 0.80601 0.78439 1.90839 1.12807 1.85970 1.53306 1.21843 0.84316 0.96602 1.16443 1.24292 1.02024 0.86233 0.99146 1.75006 0.95054 1.27285 1.18085 1.78183 1.21042 0.88083 1.16047 1.45681 1.07088 1.09290 1.46544 0.68452 0.90991 0.73531 0.73381 0.75550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -45.21 11.85 21.84 0.26 -44.95 14 2 C 0.04 1.81 5.49 85.30 0.47 2.28 14 3 Si 1.00 37.45 29.56 68.60 2.03 39.48 14 4 H -0.26 -9.47 7.11 99.48 0.71 -8.76 14 5 H -0.27 -9.82 7.11 99.48 0.71 -9.11 14 6 H -0.25 -8.65 7.11 99.48 0.71 -7.95 14 7 C -0.56 -28.83 9.54 24.83 0.24 -28.59 14 8 H 0.10 4.44 7.85 -2.91 -0.02 4.41 14 9 C 0.54 28.46 7.86 86.36 0.68 29.14 14 10 O -0.62 -36.45 14.88 -4.30 -0.06 -36.51 14 11 N -0.55 -23.51 6.26 -176.62 -1.10 -24.61 14 12 N -0.50 -17.61 6.26 -176.02 -1.10 -18.71 14 13 C 0.59 18.36 7.92 86.61 0.69 19.05 14 14 O -0.55 -19.85 16.76 -4.12 -0.07 -19.91 14 15 C -0.06 -1.39 7.17 40.41 0.29 -1.10 14 16 C 0.04 1.00 11.87 84.18 1.00 2.00 14 17 N -0.29 -7.47 12.35 -57.50 -0.71 -8.18 14 18 N -0.05 -1.26 13.35 37.02 0.49 -0.77 14 19 N -0.36 -7.57 6.97 -48.52 -0.34 -7.91 14 20 H 0.47 7.32 8.32 -219.89 -1.83 5.49 14 21 H 0.28 14.08 8.29 -92.71 -0.77 13.31 14 22 H 0.42 16.84 7.98 -213.33 -1.70 15.14 14 23 H 0.43 13.74 7.26 -213.32 -1.55 12.20 14 24 H 0.23 4.03 8.06 -2.91 -0.02 4.01 14 Total: -1.00 -69.55 237.17 -1.02 -70.57 By element: Atomic # 1 Polarization: 32.51 SS G_CDS: -3.77 Total: 28.73 kcal Atomic # 6 Polarization: 19.41 SS G_CDS: 3.36 Total: 22.77 kcal Atomic # 7 Polarization: -102.63 SS G_CDS: -2.50 Total: -105.13 kcal Atomic # 8 Polarization: -56.29 SS G_CDS: -0.13 Total: -56.43 kcal Atomic # 14 Polarization: 37.45 SS G_CDS: 2.03 Total: 39.48 kcal Total: -69.55 -1.02 -70.57 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001627298179.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.031 kcal (2) G-P(sol) polarization free energy of solvation -69.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.572 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds