Wall clock time and date at job start Mon Mar 30 2020 02:43:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.47098 * 2 1 4 4 C 1.50696 * 109.47087 * 120.00096 * 2 1 3 5 5 H 1.08003 * 120.00092 * 120.00284 * 4 2 1 6 6 C 1.37879 * 120.00258 * 299.99637 * 4 2 1 7 7 N 1.31512 * 120.00015 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 120.00053 * 179.97438 * 6 4 2 9 9 H 1.48496 * 109.47344 * 60.00162 * 8 6 4 10 10 H 1.48499 * 109.47221 * 180.02562 * 8 6 4 11 11 H 1.48502 * 109.47148 * 300.00373 * 8 6 4 12 12 N 1.46498 * 109.47257 * 240.00065 * 2 1 3 13 13 C 1.39759 * 119.99806 * 84.71990 * 12 2 1 14 14 C 1.38881 * 120.07785 * 0.02562 * 13 12 2 15 15 C 1.38114 * 119.93923 * 179.71634 * 14 13 12 16 16 C 1.38302 * 120.09063 * 0.55586 * 15 14 13 17 17 C 1.38269 * 120.15579 * 359.71497 * 16 15 14 18 18 C 1.38216 * 120.06406 * 0.02562 * 17 16 15 19 19 Cl 1.73594 * 120.04991 * 180.02562 * 18 17 16 20 20 H 1.09003 * 109.47054 * 299.99648 * 1 2 3 21 21 H 1.08996 * 109.47245 * 59.99861 * 1 2 3 22 22 H 1.08995 * 109.47098 * 180.02562 * 1 2 3 23 23 H 0.96996 * 120.00441 * 179.97438 * 7 6 4 24 24 H 0.97001 * 120.00384 * 265.00562 * 12 2 1 25 25 H 1.08005 * 120.02888 * 359.97438 * 14 13 12 26 26 H 1.07999 * 119.95539 * 180.27084 * 15 14 13 27 27 H 1.07996 * 119.92017 * 179.74233 * 16 15 14 28 28 H 1.08001 * 119.96921 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9429 0.8296 2.6035 8 14 2.3214 -1.1204 4.0079 9 1 3.8064 -1.1211 4.0081 10 1 1.8261 -0.4207 5.2204 11 1 1.8258 -2.5203 4.0076 12 7 2.0184 -0.6906 -1.1962 13 6 2.1463 0.0052 -2.4014 14 6 1.8114 1.3515 -2.4669 15 6 1.9445 2.0378 -3.6580 16 6 2.3998 1.3834 -4.7882 17 6 2.7289 0.0418 -4.7288 18 6 2.6033 -0.6500 -3.5388 19 17 3.0173 -2.3342 -3.4645 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5138 -0.8899 22 1 -0.3633 -1.0276 0.0005 23 1 0.7083 1.1608 3.4844 24 1 2.2490 -1.6318 -1.1527 25 1 1.4512 1.8623 -1.5861 26 1 1.6883 3.0857 -3.7081 27 1 2.4988 1.9217 -5.7192 28 1 3.0838 -0.4663 -5.6133 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000032009114.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:53 Heat of formation + Delta-G solvation = 9.333485 kcal Electronic energy + Delta-G solvation = -13079.795277 eV Core-core repulsion = 10734.985255 eV Total energy + Delta-G solvation = -2344.810022 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.062 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -38.97984 -35.96202 -35.62706 -32.80765 -30.29270 -29.80386 -27.24221 -25.26897 -22.53733 -21.72226 -19.96837 -17.50483 -16.36824 -15.52563 -15.27452 -14.45845 -13.84450 -13.51818 -13.35584 -13.16216 -12.37347 -11.94693 -11.55451 -11.31433 -11.08687 -10.98331 -10.92565 -10.76700 -10.45560 -10.29517 -10.12732 -9.45463 -9.09500 -8.53306 -8.36155 -6.65005 -6.19359 -4.27460 1.70560 2.05857 2.67928 3.23408 3.28060 3.30564 4.20697 4.24773 4.47995 5.13472 5.24858 5.40450 5.70426 5.90673 6.05384 6.31130 6.62089 6.67089 6.72612 6.89171 6.96386 7.00877 7.21290 7.39875 7.62606 7.78537 8.01294 8.25712 8.61205 8.84126 9.39697 10.86616 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.035501 B = 0.007864 C = 0.006796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 788.518660 B = 3559.593850 C = 4119.235085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.265 3.735 3 H 0.042 0.958 4 C -0.531 4.531 5 H 0.060 0.940 6 C 0.067 3.933 7 N -0.887 5.887 8 Si 0.902 3.098 9 H -0.276 1.276 10 H -0.285 1.285 11 H -0.276 1.276 12 N -0.715 5.715 13 C 0.249 3.751 14 C -0.194 4.194 15 C -0.066 4.066 16 C -0.198 4.198 17 C -0.062 4.062 18 C -0.136 4.136 19 Cl -0.090 7.090 20 H 0.091 0.909 21 H 0.014 0.986 22 H 0.029 0.971 23 H 0.265 0.735 24 H 0.394 0.606 25 H 0.134 0.866 26 H 0.119 0.881 27 H 0.117 0.883 28 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.621 -0.171 -10.360 10.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.163 3.837 3 H 0.060 0.940 4 C -0.570 4.570 5 H 0.079 0.921 6 C -0.136 4.136 7 N -0.524 5.524 8 Si 0.730 3.270 9 H -0.201 1.201 10 H -0.211 1.211 11 H -0.201 1.201 12 N -0.337 5.337 13 C 0.136 3.864 14 C -0.218 4.218 15 C -0.085 4.085 16 C -0.220 4.220 17 C -0.081 4.081 18 C -0.168 4.168 19 Cl -0.062 7.062 20 H 0.110 0.890 21 H 0.033 0.967 22 H 0.049 0.951 23 H 0.075 0.925 24 H 0.229 0.771 25 H 0.152 0.848 26 H 0.137 0.863 27 H 0.135 0.865 28 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 1.486 -0.114 -9.942 10.053 hybrid contribution 0.405 -0.972 0.886 1.376 sum 1.891 -1.086 -9.056 9.315 Atomic orbital electron populations 1.22190 0.98591 0.99712 1.00688 1.18790 0.90827 0.93491 0.80581 0.94027 1.21153 1.32314 1.13310 0.90199 0.92141 1.24856 0.94712 0.94956 0.99028 1.69855 1.35929 1.22549 1.24100 0.86488 0.79244 0.79667 0.81641 1.20111 1.21079 1.20136 1.45798 1.68089 1.12582 1.07193 1.17806 0.91023 0.91582 0.85944 1.20796 1.08899 0.92610 0.99447 1.20923 0.96179 0.99135 0.92247 1.20614 1.08376 0.94220 0.98744 1.20635 0.97975 0.94231 0.95292 1.20295 1.15726 0.85287 0.95535 1.98296 1.92785 1.16604 1.98495 0.89047 0.96697 0.95148 0.92476 0.77098 0.84793 0.86343 0.86514 0.86154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.61 9.19 37.16 0.34 -3.27 15 2 C 0.27 6.44 2.25 -69.09 -0.16 6.28 15 3 H 0.04 1.09 6.50 -51.93 -0.34 0.75 15 4 C -0.53 -14.04 8.73 -34.44 -0.30 -14.34 15 5 H 0.06 1.58 7.74 -52.48 -0.41 1.18 15 6 C 0.07 1.79 5.30 -17.82 -0.09 1.69 15 7 N -0.89 -24.09 11.32 55.43 0.63 -23.47 15 8 Si 0.90 20.61 29.54 -169.99 -5.02 15.59 15 9 H -0.28 -6.28 7.11 56.52 0.40 -5.88 15 10 H -0.29 -6.45 7.11 56.52 0.40 -6.05 15 11 H -0.28 -6.26 7.11 56.52 0.40 -5.86 15 12 N -0.72 -15.36 5.20 -53.26 -0.28 -15.64 15 13 C 0.25 4.86 6.63 -83.73 -0.56 4.31 15 14 C -0.19 -3.58 8.83 -39.39 -0.35 -3.93 15 15 C -0.07 -1.01 10.04 -39.60 -0.40 -1.41 15 16 C -0.20 -2.83 10.04 -39.55 -0.40 -3.23 15 17 C -0.06 -0.94 9.82 -39.58 -0.39 -1.33 15 18 C -0.14 -2.39 6.34 -39.31 -0.25 -2.64 15 19 Cl -0.09 -1.47 27.59 -51.86 -1.43 -2.90 15 20 H 0.09 2.33 6.07 -51.93 -0.32 2.02 15 21 H 0.01 0.31 7.66 -51.93 -0.40 -0.09 15 22 H 0.03 0.70 8.14 -51.93 -0.42 0.28 15 23 H 0.27 6.89 8.31 -40.82 -0.34 6.55 15 24 H 0.39 8.29 7.22 -40.82 -0.29 7.99 15 25 H 0.13 2.60 6.09 -52.48 -0.32 2.28 15 26 H 0.12 1.49 8.06 -52.49 -0.42 1.07 15 27 H 0.12 1.33 8.06 -52.49 -0.42 0.91 15 28 H 0.12 1.53 8.06 -52.49 -0.42 1.11 15 LS Contribution 254.05 15.07 3.83 3.83 Total: -1.00 -26.47 254.05 -7.72 -34.18 By element: Atomic # 1 Polarization: 9.16 SS G_CDS: -2.90 Total: 6.26 kcal Atomic # 6 Polarization: -15.31 SS G_CDS: -2.54 Total: -17.85 kcal Atomic # 7 Polarization: -39.46 SS G_CDS: 0.35 Total: -39.11 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Atomic # 17 Polarization: -1.47 SS G_CDS: -1.43 Total: -2.90 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -26.47 -7.72 -34.18 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000032009114.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.514 kcal (2) G-P(sol) polarization free energy of solvation -26.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.180 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds