Wall clock time and date at job start Mon Mar 30 2020 02:43:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.47098 * 2 1 4 4 C 1.50696 * 109.47087 * 120.00096 * 2 1 3 5 5 H 1.08003 * 120.00092 * 120.00284 * 4 2 1 6 6 C 1.37879 * 120.00258 * 299.99637 * 4 2 1 7 7 N 1.31512 * 120.00015 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 120.00053 * 179.97438 * 6 4 2 9 9 H 1.48496 * 109.47344 * 60.00162 * 8 6 4 10 10 H 1.48499 * 109.47221 * 180.02562 * 8 6 4 11 11 H 1.48502 * 109.47148 * 300.00373 * 8 6 4 12 12 N 1.46498 * 109.47257 * 240.00065 * 2 1 3 13 13 C 1.39759 * 119.99806 * 84.71990 * 12 2 1 14 14 C 1.38881 * 120.07785 * 0.02562 * 13 12 2 15 15 C 1.38114 * 119.93923 * 179.71634 * 14 13 12 16 16 C 1.38302 * 120.09063 * 0.55586 * 15 14 13 17 17 C 1.38269 * 120.15579 * 359.71497 * 16 15 14 18 18 C 1.38216 * 120.06406 * 0.02562 * 17 16 15 19 19 Cl 1.73594 * 120.04991 * 180.02562 * 18 17 16 20 20 H 1.09003 * 109.47054 * 299.99648 * 1 2 3 21 21 H 1.08996 * 109.47245 * 59.99861 * 1 2 3 22 22 H 1.08995 * 109.47098 * 180.02562 * 1 2 3 23 23 H 0.96996 * 120.00441 * 179.97438 * 7 6 4 24 24 H 0.97001 * 120.00384 * 265.00562 * 12 2 1 25 25 H 1.08005 * 120.02888 * 359.97438 * 14 13 12 26 26 H 1.07999 * 119.95539 * 180.27084 * 15 14 13 27 27 H 1.07996 * 119.92017 * 179.74233 * 16 15 14 28 28 H 1.08001 * 119.96921 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9429 0.8296 2.6035 8 14 2.3214 -1.1204 4.0079 9 1 3.8064 -1.1211 4.0081 10 1 1.8261 -0.4207 5.2204 11 1 1.8258 -2.5203 4.0076 12 7 2.0184 -0.6906 -1.1962 13 6 2.1463 0.0052 -2.4014 14 6 1.8114 1.3515 -2.4669 15 6 1.9445 2.0378 -3.6580 16 6 2.3998 1.3834 -4.7882 17 6 2.7289 0.0418 -4.7288 18 6 2.6033 -0.6500 -3.5388 19 17 3.0173 -2.3342 -3.4645 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5138 -0.8899 22 1 -0.3633 -1.0276 0.0005 23 1 0.7083 1.1608 3.4844 24 1 2.2490 -1.6318 -1.1527 25 1 1.4512 1.8623 -1.5861 26 1 1.6883 3.0857 -3.7081 27 1 2.4988 1.9217 -5.7192 28 1 3.0838 -0.4663 -5.6133 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000032009114.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:53 Heat of formation + Delta-G solvation = -4.859436 kcal Electronic energy + Delta-G solvation = -13080.410728 eV Core-core repulsion = 10734.985255 eV Total energy + Delta-G solvation = -2345.425474 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.062 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.34973 -37.39555 -37.15425 -34.64316 -31.74986 -31.35183 -28.79513 -27.27481 -24.00329 -23.12702 -21.63290 -19.14896 -17.95859 -17.13578 -16.88881 -16.07722 -15.27121 -15.01197 -14.77699 -14.67074 -14.06232 -13.72300 -13.09994 -12.99346 -12.84942 -12.60585 -12.38035 -12.28122 -12.17802 -11.99711 -11.59797 -11.14846 -10.92214 -10.51048 -9.64632 -8.24263 -8.12085 -6.35587 0.41468 0.75265 1.36326 1.42001 1.42599 1.50643 2.35716 2.85565 2.94289 3.09954 3.98031 4.24533 4.54540 4.58785 4.68071 4.75018 4.94858 5.06739 5.08406 5.34780 5.37984 5.50064 5.60492 5.72338 5.82032 6.04210 6.09835 6.47725 6.77688 7.08806 7.36028 8.84721 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.035501 B = 0.007864 C = 0.006796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 788.518660 B = 3559.593850 C = 4119.235085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.276 3.724 3 H 0.016 0.984 4 C -0.551 4.551 5 H 0.056 0.944 6 C 0.023 3.977 7 N -0.910 5.910 8 Si 0.964 3.036 9 H -0.273 1.273 10 H -0.280 1.280 11 H -0.271 1.271 12 N -0.728 5.728 13 C 0.218 3.782 14 C -0.215 4.215 15 C -0.063 4.063 16 C -0.180 4.180 17 C -0.062 4.062 18 C -0.144 4.144 19 Cl -0.085 7.085 20 H 0.069 0.931 21 H 0.026 0.974 22 H 0.025 0.975 23 H 0.267 0.733 24 H 0.393 0.607 25 H 0.113 0.887 26 H 0.148 0.852 27 H 0.158 0.842 28 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.188 -0.063 -12.021 12.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.172 3.828 3 H 0.034 0.966 4 C -0.590 4.590 5 H 0.074 0.926 6 C -0.178 4.178 7 N -0.549 5.549 8 Si 0.789 3.211 9 H -0.198 1.198 10 H -0.205 1.205 11 H -0.196 1.196 12 N -0.352 5.352 13 C 0.109 3.891 14 C -0.239 4.239 15 C -0.082 4.082 16 C -0.201 4.201 17 C -0.081 4.081 18 C -0.176 4.176 19 Cl -0.057 7.057 20 H 0.088 0.912 21 H 0.045 0.955 22 H 0.044 0.956 23 H 0.076 0.924 24 H 0.227 0.773 25 H 0.131 0.869 26 H 0.166 0.834 27 H 0.175 0.825 28 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 2.060 0.005 -11.651 11.832 hybrid contribution 0.253 -0.940 1.232 1.570 sum 2.313 -0.935 -10.419 10.713 Atomic orbital electron populations 1.21997 0.98487 0.99124 1.00125 1.18410 0.90807 0.92163 0.81384 0.96626 1.21470 1.32543 1.13452 0.91498 0.92556 1.25619 0.94836 0.95606 1.01703 1.69969 1.36626 1.23550 1.24710 0.85524 0.78652 0.78671 0.78269 1.19840 1.20521 1.19648 1.45451 1.70054 1.12417 1.07269 1.18063 0.92886 0.92223 0.85907 1.20838 1.10182 0.92617 1.00233 1.21284 0.95073 1.00499 0.91297 1.21120 1.05388 0.93866 0.99698 1.21068 0.96992 0.94760 0.95240 1.20527 1.15525 0.85817 0.95729 1.98294 1.92707 1.16163 1.98503 0.91188 0.95489 0.95552 0.92384 0.77262 0.86946 0.83435 0.82450 0.83222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.74 9.19 71.98 0.66 -6.07 15 2 C 0.28 13.87 2.25 44.24 0.10 13.97 15 3 H 0.02 0.87 6.50 -2.39 -0.02 0.86 15 4 C -0.55 -29.83 8.73 25.60 0.22 -29.61 15 5 H 0.06 3.01 7.74 -2.91 -0.02 2.99 15 6 C 0.02 1.23 5.30 84.66 0.45 1.68 15 7 N -0.91 -50.48 11.32 21.45 0.24 -50.23 15 8 Si 0.96 42.52 29.54 68.60 2.03 44.55 15 9 H -0.27 -11.86 7.11 99.48 0.71 -11.15 15 10 H -0.28 -12.02 7.11 99.48 0.71 -11.31 15 11 H -0.27 -11.70 7.11 99.48 0.71 -10.99 15 12 N -0.73 -32.05 5.20 -322.41 -1.68 -33.73 15 13 C 0.22 8.53 6.63 38.21 0.25 8.78 15 14 C -0.22 -7.91 8.83 22.39 0.20 -7.71 15 15 C -0.06 -1.76 10.04 22.26 0.22 -1.54 15 16 C -0.18 -4.38 10.04 22.29 0.22 -4.15 15 17 C -0.06 -1.66 9.82 22.27 0.22 -1.44 15 18 C -0.14 -4.85 6.34 22.44 0.14 -4.70 15 19 Cl -0.09 -2.68 27.59 -2.72 -0.08 -2.76 15 20 H 0.07 3.69 6.07 -2.39 -0.01 3.68 15 21 H 0.03 1.19 7.66 -2.39 -0.02 1.17 15 22 H 0.03 1.24 8.14 -2.39 -0.02 1.22 15 23 H 0.27 14.04 8.31 -92.71 -0.77 13.27 15 24 H 0.39 16.93 7.22 -92.71 -0.67 16.26 15 25 H 0.11 4.55 6.09 -2.91 -0.02 4.53 15 26 H 0.15 3.22 8.06 -2.91 -0.02 3.20 15 27 H 0.16 2.62 8.06 -2.91 -0.02 2.60 15 28 H 0.15 3.14 8.06 -2.91 -0.02 3.12 15 Total: -1.00 -57.24 254.05 3.71 -53.53 By element: Atomic # 1 Polarization: 18.94 SS G_CDS: 0.50 Total: 19.44 kcal Atomic # 6 Polarization: -33.49 SS G_CDS: 2.69 Total: -30.80 kcal Atomic # 7 Polarization: -82.53 SS G_CDS: -1.43 Total: -83.96 kcal Atomic # 14 Polarization: 42.52 SS G_CDS: 2.03 Total: 44.55 kcal Atomic # 17 Polarization: -2.68 SS G_CDS: -0.08 Total: -2.76 kcal Total: -57.24 3.71 -53.53 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000032009114.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.668 kcal (2) G-P(sol) polarization free energy of solvation -57.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds