Wall clock time and date at job start Mon Mar 30 2020 02:43:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.47102 * 2 1 4 4 C 1.50702 * 109.47158 * 120.00602 * 2 1 3 5 5 H 1.07999 * 120.00345 * 119.99572 * 4 2 1 6 6 C 1.37881 * 119.99642 * 299.99712 * 4 2 1 7 7 N 1.31509 * 120.00126 * 359.97438 * 6 4 2 8 8 Si 1.86804 * 119.99829 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47009 * 89.99993 * 8 6 4 10 10 H 1.48498 * 109.47066 * 209.99704 * 8 6 4 11 11 H 1.48497 * 109.47042 * 330.00241 * 8 6 4 12 12 N 1.46504 * 109.46866 * 239.99960 * 2 1 3 13 13 C 1.39671 * 119.99799 * 85.00220 * 12 2 1 14 14 C 1.38943 * 120.06780 * 179.97438 * 13 12 2 15 15 C 1.38095 * 119.94805 * 179.97438 * 14 13 12 16 16 C 1.38289 * 120.09010 * 0.02562 * 15 14 13 17 17 C 1.38379 * 120.13591 * 0.02562 * 16 15 14 18 18 Cl 1.73600 * 119.97471 * 179.97438 * 17 16 15 19 19 C 1.38248 * 120.04823 * 0.02562 * 17 16 15 20 20 H 1.08998 * 109.47102 * 179.97438 * 1 2 3 21 21 H 1.09002 * 109.46574 * 299.99819 * 1 2 3 22 22 H 1.08993 * 109.46949 * 59.99267 * 1 2 3 23 23 H 0.96996 * 120.00375 * 179.97438 * 7 6 4 24 24 H 0.96994 * 120.00274 * 265.00194 * 12 2 1 25 25 H 1.07997 * 120.02536 * 0.25654 * 14 13 12 26 26 H 1.07998 * 119.94977 * 180.02562 * 15 14 13 27 27 H 1.07998 * 119.93077 * 179.97438 * 16 15 14 28 28 H 1.08000 * 120.03883 * 179.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6532 -1.5887 1.1313 6 6 1.6993 -0.2395 2.4827 7 7 0.9437 0.8300 2.6034 8 14 2.3225 -1.1198 4.0079 9 1 3.6305 -0.5443 4.4118 10 1 1.3445 -0.9492 5.1122 11 1 2.4881 -2.5656 3.7120 12 7 2.0183 -0.6906 -1.1962 13 6 2.1517 0.0062 -2.3993 14 6 2.6151 -0.6473 -3.5345 15 6 2.7456 0.0439 -4.7229 16 6 2.4161 1.3856 -4.7844 17 6 1.9551 2.0402 -3.6557 18 17 1.5433 3.7247 -3.7375 19 6 1.8234 1.3540 -2.4628 20 1 -0.3633 -1.0276 -0.0005 21 1 -0.3632 0.5138 0.8900 22 1 -0.3633 0.5139 -0.8899 23 1 0.7090 1.1612 3.4844 24 1 2.2489 -1.6318 -1.1527 25 1 2.8688 -1.6960 -3.4887 26 1 3.1054 -0.4640 -5.6054 27 1 2.5194 1.9238 -5.7150 28 1 1.4640 1.8651 -1.5819 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000032009117.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:56 Heat of formation + Delta-G solvation = 9.057590 kcal Electronic energy + Delta-G solvation = -12963.151410 eV Core-core repulsion = 10618.329424 eV Total energy + Delta-G solvation = -2344.821986 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.062 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -38.97888 -36.31015 -35.40565 -32.78458 -30.33250 -29.80697 -27.29604 -25.28308 -22.51045 -21.75461 -20.02814 -17.50082 -16.34572 -15.45517 -15.22976 -14.45349 -14.03737 -13.48854 -13.34746 -13.16505 -12.39520 -12.12988 -11.49095 -11.44643 -11.08604 -10.98351 -10.94606 -10.73827 -10.53139 -10.30541 -10.14281 -9.39973 -9.09541 -8.54510 -8.35837 -6.69571 -6.20002 -4.28687 1.68776 2.02707 2.53219 3.20727 3.27739 3.29779 4.20060 4.24255 4.48463 5.12753 5.24901 5.55671 5.63791 5.92587 6.05531 6.20991 6.62865 6.71655 6.80464 6.83075 6.90841 6.99092 7.14240 7.39927 7.61651 7.78444 8.00882 8.25762 8.61008 8.83524 9.38686 10.85967 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.037685 B = 0.006963 C = 0.006205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 742.825900 B = 4020.314942 C = 4511.103320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.264 3.736 3 H 0.041 0.959 4 C -0.532 4.532 5 H 0.061 0.939 6 C 0.067 3.933 7 N -0.885 5.885 8 Si 0.902 3.098 9 H -0.279 1.279 10 H -0.285 1.285 11 H -0.274 1.274 12 N -0.719 5.719 13 C 0.249 3.751 14 C -0.216 4.216 15 C -0.061 4.061 16 C -0.200 4.200 17 C 0.020 3.980 18 Cl -0.089 7.089 19 C -0.197 4.197 20 H 0.029 0.971 21 H 0.091 0.909 22 H 0.014 0.986 23 H 0.265 0.735 24 H 0.392 0.608 25 H 0.118 0.882 26 H 0.121 0.879 27 H 0.119 0.881 28 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.617 0.064 -10.496 10.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.162 3.838 3 H 0.059 0.941 4 C -0.571 4.571 5 H 0.079 0.921 6 C -0.136 4.136 7 N -0.523 5.523 8 Si 0.730 3.270 9 H -0.205 1.205 10 H -0.210 1.210 11 H -0.199 1.199 12 N -0.340 5.340 13 C 0.138 3.862 14 C -0.240 4.240 15 C -0.080 4.080 16 C -0.222 4.222 17 C -0.007 4.007 18 Cl -0.060 7.060 19 C -0.221 4.221 20 H 0.048 0.952 21 H 0.109 0.891 22 H 0.033 0.967 23 H 0.075 0.925 24 H 0.226 0.774 25 H 0.136 0.864 26 H 0.138 0.862 27 H 0.137 0.863 28 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 1.404 0.431 -10.105 10.211 hybrid contribution 0.317 -0.627 0.911 1.150 sum 1.720 -0.196 -9.194 9.356 Atomic orbital electron populations 1.22185 0.98645 0.99613 1.00726 1.18787 0.90815 0.93514 0.80682 0.94107 1.21181 1.32341 1.13322 0.90213 0.92087 1.24874 0.94713 0.94966 0.99082 1.69869 1.35873 1.22499 1.24028 0.86434 0.78639 0.79880 0.82094 1.20501 1.21019 1.19860 1.45642 1.68779 1.12145 1.07476 1.17870 0.90564 0.90776 0.87015 1.20629 1.10440 1.00224 0.92678 1.20641 0.97178 0.93261 0.96887 1.20529 1.09019 0.95277 0.97332 1.20585 1.00711 0.84201 0.95226 1.98331 1.92324 1.16679 1.98660 1.20629 1.09984 0.93682 0.97757 0.95172 0.89092 0.96729 0.92495 0.77413 0.86388 0.86152 0.86314 0.84567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.61 9.21 37.16 0.34 -3.26 15 2 C 0.26 6.35 2.25 -69.08 -0.16 6.20 15 3 H 0.04 1.08 6.48 -51.93 -0.34 0.74 15 4 C -0.53 -13.83 8.73 -34.44 -0.30 -14.13 15 5 H 0.06 1.55 7.74 -52.49 -0.41 1.14 15 6 C 0.07 1.76 5.30 -17.82 -0.09 1.66 15 7 N -0.89 -24.15 11.32 55.43 0.63 -23.53 15 8 Si 0.90 20.42 29.54 -169.99 -5.02 15.40 15 9 H -0.28 -6.32 7.11 56.52 0.40 -5.91 15 10 H -0.28 -6.41 7.11 56.52 0.40 -6.01 15 11 H -0.27 -6.11 7.11 56.52 0.40 -5.71 15 12 N -0.72 -14.68 5.24 -53.29 -0.28 -14.96 15 13 C 0.25 4.69 6.64 -83.79 -0.56 4.13 15 14 C -0.22 -3.44 9.90 -39.37 -0.39 -3.83 15 15 C -0.06 -0.86 10.04 -39.62 -0.40 -1.26 15 16 C -0.20 -3.01 9.83 -39.51 -0.39 -3.40 15 17 C 0.02 0.34 6.32 -39.53 -0.25 0.09 15 18 Cl -0.09 -1.39 28.95 -51.86 -1.50 -2.89 15 19 C -0.20 -3.78 8.63 -39.34 -0.34 -4.12 15 20 H 0.03 0.68 8.14 -51.93 -0.42 0.26 15 21 H 0.09 2.34 6.07 -51.93 -0.32 2.03 15 22 H 0.01 0.31 7.72 -51.93 -0.40 -0.09 15 23 H 0.27 6.90 8.31 -40.82 -0.34 6.56 15 24 H 0.39 7.38 8.55 -40.82 -0.35 7.03 15 25 H 0.12 1.64 8.06 -52.49 -0.42 1.21 15 26 H 0.12 1.33 8.06 -52.49 -0.42 0.90 15 27 H 0.12 1.53 8.06 -52.49 -0.42 1.11 15 28 H 0.14 2.85 6.12 -52.49 -0.32 2.53 15 LS Contribution 256.52 15.07 3.87 3.87 Total: -1.00 -26.44 256.52 -7.79 -34.23 By element: Atomic # 1 Polarization: 8.75 SS G_CDS: -2.96 Total: 5.80 kcal Atomic # 6 Polarization: -15.39 SS G_CDS: -2.53 Total: -17.92 kcal Atomic # 7 Polarization: -38.83 SS G_CDS: 0.35 Total: -38.48 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.40 kcal Atomic # 17 Polarization: -1.39 SS G_CDS: -1.50 Total: -2.89 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -26.44 -7.79 -34.23 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000032009117.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.287 kcal (2) G-P(sol) polarization free energy of solvation -26.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.229 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds