Wall clock time and date at job start Mon Mar 30 2020 02:43:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 109.46775 * 2 1 4 4 C 1.50693 * 109.47400 * 239.99919 * 2 1 3 5 5 H 1.08004 * 120.00159 * 240.00043 * 4 2 1 6 6 C 1.37883 * 120.00306 * 59.99748 * 4 2 1 7 7 N 1.31518 * 119.99843 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 120.00263 * 180.02562 * 6 4 2 9 9 H 1.48495 * 109.47216 * 0.02562 * 8 6 4 10 10 H 1.48503 * 109.46814 * 120.00039 * 8 6 4 11 11 H 1.48500 * 109.47130 * 240.00036 * 8 6 4 12 12 N 1.46498 * 109.47011 * 119.99593 * 2 1 3 13 13 C 1.39678 * 120.00088 * 275.00015 * 12 2 1 14 14 C 1.38935 * 120.06603 * 179.97438 * 13 12 2 15 15 C 1.38092 * 119.95177 * 180.02562 * 14 13 12 16 16 C 1.38282 * 120.08244 * 0.26175 * 15 14 13 17 17 C 1.38385 * 120.13898 * 359.48406 * 16 15 14 18 18 Cl 1.73598 * 119.97577 * 180.26129 * 17 16 15 19 19 C 1.38235 * 120.04554 * 0.51341 * 17 16 15 20 20 H 1.09004 * 109.46803 * 60.00084 * 1 2 3 21 21 H 1.08997 * 109.46972 * 180.02562 * 1 2 3 22 22 H 1.08998 * 109.47099 * 300.00716 * 1 2 3 23 23 H 0.96992 * 120.00533 * 179.97438 * 7 6 4 24 24 H 0.96998 * 119.99705 * 95.00404 * 12 2 1 25 25 H 1.08010 * 120.02707 * 0.02562 * 14 13 12 26 26 H 1.08002 * 119.95527 * 179.97438 * 15 14 13 27 27 H 1.08001 * 119.92750 * 179.74715 * 16 15 14 28 28 H 1.08007 * 120.04389 * 179.76978 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6534 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9436 0.8301 -2.6035 8 14 2.3215 -1.1204 -4.0079 9 1 3.1456 -2.2877 -3.6037 10 1 1.1662 -1.5868 -4.8160 11 1 3.1467 -0.1875 -4.8165 12 7 2.0183 -0.6905 1.1962 13 6 2.1517 0.0064 2.3994 14 6 2.6142 -0.6473 3.5348 15 6 2.7446 0.0438 4.7232 16 6 2.4105 1.3842 4.7858 17 6 1.9545 2.0401 3.6558 18 17 1.5426 3.7245 3.7376 19 6 1.8218 1.3537 2.4633 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3633 0.5139 0.8899 23 1 0.7095 1.1617 -3.4844 24 1 2.2491 -1.6316 1.1527 25 1 2.8715 -1.6953 3.4880 26 1 3.1037 -0.4644 5.6059 27 1 2.5096 1.9213 5.7175 28 1 1.4623 1.8648 1.5823 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000032009118.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:57 Heat of formation + Delta-G solvation = 9.023594 kcal Electronic energy + Delta-G solvation = -12963.284497 eV Core-core repulsion = 10618.461037 eV Total energy + Delta-G solvation = -2344.823460 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.062 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -38.98026 -36.31045 -35.40639 -32.78438 -30.33318 -29.80771 -27.29607 -25.28503 -22.51032 -21.75543 -20.02920 -17.50123 -16.34760 -15.45585 -15.23200 -14.45059 -14.03896 -13.48765 -13.34709 -13.16544 -12.39972 -12.13132 -11.48930 -11.45061 -11.10185 -10.97688 -10.94061 -10.72963 -10.52370 -10.31297 -10.14560 -9.39929 -9.08534 -8.54973 -8.35884 -6.69610 -6.20268 -4.28834 1.68773 2.02681 2.53202 3.19589 3.27888 3.30804 4.20109 4.24201 4.48372 5.12555 5.24860 5.55630 5.63755 5.92593 6.05497 6.20957 6.62793 6.71626 6.80418 6.83059 6.90793 6.99044 7.14211 7.39886 7.61688 7.78484 8.00786 8.25686 8.61075 8.83603 9.38593 10.85753 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.037695 B = 0.006963 C = 0.006205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 742.631592 B = 4020.457287 C = 4511.428996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.264 3.736 3 H 0.041 0.959 4 C -0.531 4.531 5 H 0.062 0.938 6 C 0.066 3.934 7 N -0.885 5.885 8 Si 0.902 3.098 9 H -0.273 1.273 10 H -0.282 1.282 11 H -0.282 1.282 12 N -0.719 5.719 13 C 0.249 3.751 14 C -0.216 4.216 15 C -0.061 4.061 16 C -0.200 4.200 17 C 0.020 3.980 18 Cl -0.089 7.089 19 C -0.197 4.197 20 H 0.091 0.909 21 H 0.029 0.971 22 H 0.014 0.986 23 H 0.264 0.736 24 H 0.392 0.608 25 H 0.118 0.882 26 H 0.121 0.879 27 H 0.119 0.881 28 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.626 0.057 10.508 10.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.162 3.838 3 H 0.059 0.941 4 C -0.570 4.570 5 H 0.080 0.920 6 C -0.137 4.137 7 N -0.523 5.523 8 Si 0.729 3.271 9 H -0.197 1.197 10 H -0.208 1.208 11 H -0.208 1.208 12 N -0.340 5.340 13 C 0.138 3.862 14 C -0.240 4.240 15 C -0.080 4.080 16 C -0.222 4.222 17 C -0.007 4.007 18 Cl -0.060 7.060 19 C -0.220 4.220 20 H 0.109 0.891 21 H 0.048 0.952 22 H 0.033 0.967 23 H 0.074 0.926 24 H 0.226 0.774 25 H 0.136 0.864 26 H 0.139 0.861 27 H 0.137 0.863 28 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 1.417 0.422 10.119 10.226 hybrid contribution 0.304 -0.622 -0.916 1.148 sum 1.721 -0.200 9.203 9.365 Atomic orbital electron populations 1.22187 0.98645 0.99612 1.00728 1.18790 0.90815 0.93525 0.80700 0.94105 1.21220 1.32266 1.13296 0.90200 0.92031 1.24881 0.94732 0.94959 0.99100 1.69881 1.35968 1.22498 1.23925 0.86380 0.78636 0.79572 0.82469 1.19739 1.20836 1.20806 1.45642 1.68781 1.12145 1.07477 1.17867 0.90578 0.90777 0.87006 1.20629 1.10433 1.00224 0.92682 1.20640 0.97161 0.93271 0.96898 1.20530 1.09049 0.95296 0.97278 1.20583 1.00726 0.84199 0.95220 1.98331 1.92322 1.16676 1.98661 1.20627 1.09941 0.93689 0.97786 0.89093 0.95174 0.96727 0.92551 0.77412 0.86387 0.86150 0.86315 0.84566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.61 9.21 37.16 0.34 -3.27 15 2 C 0.26 6.34 2.25 -69.09 -0.16 6.19 15 3 H 0.04 1.08 6.48 -51.93 -0.34 0.74 15 4 C -0.53 -13.81 8.73 -34.44 -0.30 -14.11 15 5 H 0.06 1.57 7.74 -52.48 -0.41 1.16 15 6 C 0.07 1.75 5.30 -17.82 -0.09 1.65 15 7 N -0.89 -24.15 11.32 55.43 0.63 -23.53 15 8 Si 0.90 20.42 29.54 -169.99 -5.02 15.40 15 9 H -0.27 -6.09 7.11 56.52 0.40 -5.69 15 10 H -0.28 -6.36 7.11 56.52 0.40 -5.96 15 11 H -0.28 -6.39 7.11 56.52 0.40 -5.99 15 12 N -0.72 -14.68 5.24 -53.30 -0.28 -14.96 15 13 C 0.25 4.69 6.64 -83.79 -0.56 4.13 15 14 C -0.22 -3.44 9.90 -39.38 -0.39 -3.83 15 15 C -0.06 -0.86 10.04 -39.62 -0.40 -1.26 15 16 C -0.20 -3.01 9.83 -39.51 -0.39 -3.40 15 17 C 0.02 0.34 6.32 -39.53 -0.25 0.09 15 18 Cl -0.09 -1.39 28.95 -51.86 -1.50 -2.89 15 19 C -0.20 -3.78 8.63 -39.35 -0.34 -4.12 15 20 H 0.09 2.34 6.07 -51.93 -0.32 2.03 15 21 H 0.03 0.68 8.14 -51.93 -0.42 0.26 15 22 H 0.01 0.31 7.71 -51.93 -0.40 -0.09 15 23 H 0.26 6.86 8.31 -40.82 -0.34 6.52 15 24 H 0.39 7.38 8.55 -40.82 -0.35 7.03 15 25 H 0.12 1.64 8.06 -52.48 -0.42 1.21 15 26 H 0.12 1.33 8.06 -52.49 -0.42 0.90 15 27 H 0.12 1.53 8.06 -52.49 -0.42 1.11 15 28 H 0.14 2.85 6.12 -52.48 -0.32 2.53 15 LS Contribution 256.50 15.07 3.87 3.87 Total: -1.00 -26.46 256.50 -7.79 -34.25 By element: Atomic # 1 Polarization: 8.73 SS G_CDS: -2.95 Total: 5.77 kcal Atomic # 6 Polarization: -15.39 SS G_CDS: -2.53 Total: -17.92 kcal Atomic # 7 Polarization: -38.83 SS G_CDS: 0.35 Total: -38.48 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.40 kcal Atomic # 17 Polarization: -1.39 SS G_CDS: -1.50 Total: -2.89 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -26.46 -7.79 -34.25 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000032009118.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.278 kcal (2) G-P(sol) polarization free energy of solvation -26.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.255 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds