Wall clock time and date at job start Mon Mar 30 2020 02:43:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 109.46775 * 2 1 4 4 C 1.50693 * 109.47400 * 239.99919 * 2 1 3 5 5 H 1.08004 * 120.00159 * 240.00043 * 4 2 1 6 6 C 1.37883 * 120.00306 * 59.99748 * 4 2 1 7 7 N 1.31518 * 119.99843 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 120.00263 * 180.02562 * 6 4 2 9 9 H 1.48495 * 109.47216 * 0.02562 * 8 6 4 10 10 H 1.48503 * 109.46814 * 120.00039 * 8 6 4 11 11 H 1.48500 * 109.47130 * 240.00036 * 8 6 4 12 12 N 1.46498 * 109.47011 * 119.99593 * 2 1 3 13 13 C 1.39678 * 120.00088 * 275.00015 * 12 2 1 14 14 C 1.38935 * 120.06603 * 179.97438 * 13 12 2 15 15 C 1.38092 * 119.95177 * 180.02562 * 14 13 12 16 16 C 1.38282 * 120.08244 * 0.26175 * 15 14 13 17 17 C 1.38385 * 120.13898 * 359.48406 * 16 15 14 18 18 Cl 1.73598 * 119.97577 * 180.26129 * 17 16 15 19 19 C 1.38235 * 120.04554 * 0.51341 * 17 16 15 20 20 H 1.09004 * 109.46803 * 60.00084 * 1 2 3 21 21 H 1.08997 * 109.46972 * 180.02562 * 1 2 3 22 22 H 1.08998 * 109.47099 * 300.00716 * 1 2 3 23 23 H 0.96992 * 120.00533 * 179.97438 * 7 6 4 24 24 H 0.96998 * 119.99705 * 95.00404 * 12 2 1 25 25 H 1.08010 * 120.02707 * 0.02562 * 14 13 12 26 26 H 1.08002 * 119.95527 * 179.97438 * 15 14 13 27 27 H 1.08001 * 119.92750 * 179.74715 * 16 15 14 28 28 H 1.08007 * 120.04389 * 179.76978 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6534 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9436 0.8301 -2.6035 8 14 2.3215 -1.1204 -4.0079 9 1 3.1456 -2.2877 -3.6037 10 1 1.1662 -1.5868 -4.8160 11 1 3.1467 -0.1875 -4.8165 12 7 2.0183 -0.6905 1.1962 13 6 2.1517 0.0064 2.3994 14 6 2.6142 -0.6473 3.5348 15 6 2.7446 0.0438 4.7232 16 6 2.4105 1.3842 4.7858 17 6 1.9545 2.0401 3.6558 18 17 1.5426 3.7245 3.7376 19 6 1.8218 1.3537 2.4633 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3633 0.5139 0.8899 23 1 0.7095 1.1617 -3.4844 24 1 2.2491 -1.6316 1.1527 25 1 2.8715 -1.6953 3.4880 26 1 3.1037 -0.4644 5.6059 27 1 2.5096 1.9213 5.7175 28 1 1.4623 1.8648 1.5823 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000032009118.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:57 Heat of formation + Delta-G solvation = -5.316050 kcal Electronic energy + Delta-G solvation = -12963.906310 eV Core-core repulsion = 10618.461037 eV Total energy + Delta-G solvation = -2345.445274 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.062 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.34461 -37.71855 -36.94028 -34.59484 -31.78733 -31.35925 -28.84627 -27.28203 -23.96640 -23.17251 -21.68706 -19.13117 -17.97286 -17.09538 -16.76185 -16.02017 -15.49913 -15.07449 -14.74053 -14.58246 -14.09262 -13.80741 -13.19716 -13.04476 -12.84702 -12.53645 -12.40146 -12.28712 -12.19647 -12.01792 -11.68894 -11.10347 -10.84407 -10.50757 -9.65686 -8.24904 -8.13525 -6.35634 0.38543 0.72585 1.24097 1.40993 1.42975 1.54038 2.36131 2.89716 2.93071 3.10960 4.05761 4.30524 4.40283 4.62107 4.67223 4.81017 4.88367 4.98950 5.09018 5.38402 5.39910 5.50101 5.58754 5.61626 5.81192 5.99130 6.09278 6.50782 6.79734 7.17846 7.37181 8.85803 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.037695 B = 0.006963 C = 0.006205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 742.631592 B = 4020.457287 C = 4511.428996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.274 3.726 3 H 0.007 0.993 4 C -0.546 4.546 5 H 0.064 0.936 6 C 0.018 3.982 7 N -0.915 5.915 8 Si 0.967 3.033 9 H -0.265 1.265 10 H -0.279 1.279 11 H -0.282 1.282 12 N -0.726 5.726 13 C 0.223 3.777 14 C -0.209 4.209 15 C -0.050 4.050 16 C -0.189 4.189 17 C 0.008 3.992 18 Cl -0.083 7.083 19 C -0.222 4.222 20 H 0.066 0.934 21 H 0.031 0.969 22 H 0.020 0.980 23 H 0.265 0.735 24 H 0.399 0.601 25 H 0.142 0.858 26 H 0.166 0.834 27 H 0.147 0.853 28 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.587 -1.124 12.252 12.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.170 3.830 3 H 0.025 0.975 4 C -0.585 4.585 5 H 0.082 0.918 6 C -0.182 4.182 7 N -0.553 5.553 8 Si 0.792 3.208 9 H -0.189 1.189 10 H -0.205 1.205 11 H -0.208 1.208 12 N -0.351 5.351 13 C 0.115 3.885 14 C -0.232 4.232 15 C -0.069 4.069 16 C -0.210 4.210 17 C -0.020 4.020 18 Cl -0.054 7.054 19 C -0.246 4.246 20 H 0.084 0.916 21 H 0.050 0.950 22 H 0.039 0.961 23 H 0.075 0.925 24 H 0.234 0.766 25 H 0.160 0.840 26 H 0.183 0.817 27 H 0.165 0.835 28 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 2.388 -0.757 11.910 12.170 hybrid contribution 0.025 -0.190 -1.299 1.313 sum 2.414 -0.947 10.611 10.923 Atomic orbital electron populations 1.21993 0.98727 0.99278 0.99759 1.18370 0.90673 0.91988 0.81920 0.97487 1.21561 1.32256 1.13432 0.91215 0.91784 1.25699 0.94902 0.95615 1.02014 1.70013 1.36983 1.23778 1.24532 0.85373 0.78105 0.78545 0.78782 1.18909 1.20454 1.20759 1.45253 1.70347 1.12319 1.07142 1.18122 0.92122 0.90815 0.87395 1.20966 1.08783 1.01410 0.91997 1.21153 0.95273 0.92825 0.97622 1.20970 1.06799 0.95861 0.97359 1.20753 1.01214 0.84719 0.95273 1.98328 1.92312 1.16129 1.98616 1.20522 1.11873 0.94397 0.97805 0.91566 0.94952 0.96068 0.92526 0.76626 0.84019 0.81689 0.83481 0.87695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.77 9.21 71.98 0.66 -6.10 15 2 C 0.27 13.64 2.25 44.24 0.10 13.74 15 3 H 0.01 0.41 6.48 -2.38 -0.02 0.40 15 4 C -0.55 -28.86 8.73 25.60 0.22 -28.64 15 5 H 0.06 3.27 7.74 -2.91 -0.02 3.24 15 6 C 0.02 0.95 5.30 84.66 0.45 1.40 15 7 N -0.91 -51.30 11.32 21.45 0.24 -51.05 15 8 Si 0.97 42.07 29.54 68.60 2.03 44.10 15 9 H -0.26 -11.09 7.11 99.48 0.71 -10.38 15 10 H -0.28 -11.90 7.11 99.48 0.71 -11.19 15 11 H -0.28 -12.16 7.11 99.48 0.71 -11.45 15 12 N -0.73 -29.92 5.24 -322.53 -1.69 -31.61 15 13 C 0.22 8.33 6.64 38.21 0.25 8.59 15 14 C -0.21 -6.03 9.90 22.40 0.22 -5.81 15 15 C -0.05 -1.21 10.04 22.25 0.22 -0.98 15 16 C -0.19 -5.04 9.83 22.32 0.22 -4.82 15 17 C 0.01 0.25 6.32 22.30 0.14 0.39 15 18 Cl -0.08 -2.54 28.95 -2.72 -0.08 -2.62 15 19 C -0.22 -8.68 8.63 22.42 0.19 -8.48 15 20 H 0.07 3.55 6.07 -2.39 -0.01 3.54 15 21 H 0.03 1.50 8.14 -2.39 -0.02 1.48 15 22 H 0.02 0.95 7.71 -2.39 -0.02 0.93 15 23 H 0.27 14.10 8.31 -92.71 -0.77 13.33 15 24 H 0.40 14.90 8.55 -92.71 -0.79 14.11 15 25 H 0.14 3.40 8.06 -2.91 -0.02 3.38 15 26 H 0.17 2.58 8.06 -2.91 -0.02 2.55 15 27 H 0.15 3.11 8.06 -2.91 -0.02 3.09 15 28 H 0.10 4.70 6.12 -2.91 -0.02 4.68 15 Total: -1.00 -57.76 256.50 3.57 -54.19 By element: Atomic # 1 Polarization: 17.33 SS G_CDS: 0.38 Total: 17.71 kcal Atomic # 6 Polarization: -33.41 SS G_CDS: 2.69 Total: -30.72 kcal Atomic # 7 Polarization: -81.22 SS G_CDS: -1.45 Total: -82.66 kcal Atomic # 14 Polarization: 42.07 SS G_CDS: 2.03 Total: 44.10 kcal Atomic # 17 Polarization: -2.54 SS G_CDS: -0.08 Total: -2.62 kcal Total: -57.76 3.57 -54.19 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000032009118.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.876 kcal (2) G-P(sol) polarization free energy of solvation -57.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.192 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds