Wall clock time and date at job start Mon Mar 30 2020 02:43:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.47320 * 2 1 4 4 C 1.50693 * 109.47058 * 120.00258 * 2 1 3 5 5 H 1.07998 * 120.00003 * 84.94829 * 4 2 1 6 6 C 1.37884 * 119.99930 * 264.94181 * 4 2 1 7 7 N 1.31519 * 119.99844 * 179.59244 * 6 4 2 8 8 Si 1.86801 * 120.00168 * 359.59547 * 6 4 2 9 9 H 1.48496 * 109.46881 * 269.77231 * 8 6 4 10 10 H 1.48505 * 109.46623 * 29.76573 * 8 6 4 11 11 H 1.48494 * 109.47194 * 149.76650 * 8 6 4 12 12 N 1.46497 * 109.46955 * 240.00279 * 2 1 3 13 13 C 1.39745 * 120.00146 * 84.99742 * 12 2 1 14 14 C 1.38900 * 120.06062 * 359.72950 * 13 12 2 15 15 C 1.38108 * 119.93694 * 179.71742 * 14 13 12 16 16 C 1.38380 * 120.05990 * 0.55595 * 15 14 13 17 17 Cl 1.73604 * 119.93991 * 179.69853 * 16 15 14 18 18 C 1.38381 * 120.12559 * 359.71970 * 16 15 14 19 19 C 1.38104 * 120.06186 * 359.97438 * 18 16 15 20 20 H 1.09003 * 109.47263 * 54.53635 * 1 2 3 21 21 H 1.08995 * 109.47247 * 174.53504 * 1 2 3 22 22 H 1.09005 * 109.46630 * 294.53736 * 1 2 3 23 23 H 0.96992 * 119.99873 * 180.02562 * 7 6 4 24 24 H 0.97001 * 119.99906 * 265.00310 * 12 2 1 25 25 H 1.07996 * 120.02622 * 359.97315 * 14 13 12 26 26 H 1.07999 * 119.97231 * 180.24890 * 15 14 13 27 27 H 1.08008 * 119.97052 * 179.97438 * 18 16 15 28 28 H 1.07999 * 120.03613 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.1346 -1.7856 1.2292 6 6 2.3614 0.0122 2.3577 7 7 2.7921 -0.6086 3.4341 8 14 2.1952 1.8728 2.3559 9 1 3.4703 2.4831 1.9011 10 1 1.0999 2.2710 1.4356 11 1 1.8834 2.3432 3.7294 12 7 2.0183 -0.6905 -1.1962 13 6 2.1517 0.0066 -2.4000 14 6 1.8164 1.3529 -2.4651 15 6 1.9547 2.0409 -3.6546 16 6 2.4160 1.3873 -4.7838 17 17 2.5813 2.2532 -6.2793 18 6 2.7454 0.0446 -4.7232 19 6 2.6150 -0.6467 -3.5348 20 1 -0.3634 0.5962 -0.8370 21 1 -0.3633 -1.0229 -0.0979 22 1 -0.3633 0.4268 0.9349 23 1 3.0232 -0.1003 4.2272 24 1 2.2489 -1.6317 -1.1527 25 1 1.4517 1.8622 -1.5854 26 1 1.6980 3.0887 -3.7049 27 1 3.1049 -0.4631 -5.6061 28 1 2.8718 -1.6947 -3.4880 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000032009120.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:58 Heat of formation + Delta-G solvation = -6.635678 kcal Electronic energy + Delta-G solvation = -12942.976108 eV Core-core repulsion = 10597.473611 eV Total energy + Delta-G solvation = -2345.502497 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.062 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.38588 -37.75458 -36.77022 -34.53557 -32.34407 -31.65891 -28.80774 -27.26265 -24.04643 -23.12971 -21.50547 -19.55753 -18.06451 -17.34951 -16.91827 -15.94958 -15.44430 -14.95158 -14.68493 -14.55041 -14.34811 -13.97215 -13.59666 -13.22918 -12.94851 -12.65494 -12.59792 -12.33202 -12.03871 -11.83976 -11.55548 -11.17017 -10.90251 -10.55820 -9.91376 -8.37847 -8.13754 -6.45868 0.47467 0.58173 1.32871 1.35257 1.41299 1.44494 2.28164 2.68033 2.89584 3.11812 3.94823 4.07152 4.38250 4.48440 4.56919 4.66467 4.79635 4.86889 5.03140 5.09179 5.29288 5.38462 5.46283 5.51439 5.52582 5.82068 6.07697 6.57598 6.66333 7.05678 7.23912 8.78122 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.045611 B = 0.006630 C = 0.006223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 613.739675 B = 4222.128027 C = 4498.028969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.241 3.759 3 H 0.040 0.960 4 C -0.531 4.531 5 H 0.042 0.958 6 C 0.022 3.978 7 N -0.939 5.939 8 Si 0.934 3.066 9 H -0.271 1.271 10 H -0.237 1.237 11 H -0.282 1.282 12 N -0.724 5.724 13 C 0.219 3.781 14 C -0.214 4.214 15 C -0.059 4.059 16 C -0.117 4.117 17 Cl -0.084 7.084 18 C -0.056 4.056 19 C -0.201 4.201 20 H 0.049 0.951 21 H 0.047 0.953 22 H 0.049 0.951 23 H 0.269 0.731 24 H 0.397 0.603 25 H 0.121 0.879 26 H 0.142 0.858 27 H 0.149 0.851 28 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.928 5.105 -15.453 16.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.137 3.863 3 H 0.058 0.942 4 C -0.569 4.569 5 H 0.060 0.940 6 C -0.177 4.177 7 N -0.578 5.578 8 Si 0.757 3.243 9 H -0.196 1.196 10 H -0.160 1.160 11 H -0.208 1.208 12 N -0.348 5.348 13 C 0.111 3.889 14 C -0.237 4.237 15 C -0.078 4.078 16 C -0.146 4.146 17 Cl -0.055 7.055 18 C -0.075 4.075 19 C -0.224 4.224 20 H 0.068 0.932 21 H 0.066 0.934 22 H 0.068 0.932 23 H 0.079 0.921 24 H 0.232 0.768 25 H 0.139 0.861 26 H 0.160 0.840 27 H 0.167 0.833 28 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -1.940 5.294 -15.186 16.198 hybrid contribution 0.221 0.159 0.644 0.699 sum -1.719 5.452 -14.541 15.625 Atomic orbital electron populations 1.22249 0.97447 1.00925 1.00148 1.18895 0.91561 0.93086 0.82746 0.94234 1.21249 1.44323 0.94445 0.96889 0.93983 1.25810 0.93507 1.03521 0.94874 1.70017 1.45315 1.38285 1.04168 0.85942 0.80170 0.79891 0.78310 1.19602 1.15957 1.20823 1.45415 1.70026 1.12491 1.06836 1.18382 0.91763 0.91935 0.86818 1.20736 1.10457 0.93626 0.98920 1.20878 0.96290 1.00240 0.90402 1.20598 1.12470 0.93731 0.87816 1.98312 1.96957 1.77027 1.33243 1.20922 0.96584 0.91930 0.98057 1.20716 1.09089 1.01178 0.91440 0.93206 0.93370 0.93213 0.92150 0.76812 0.86121 0.84041 0.83293 0.84138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.79 9.37 71.98 0.67 -5.12 15 2 C 0.24 10.45 1.82 44.24 0.08 10.53 15 3 H 0.04 1.74 3.74 -2.39 -0.01 1.73 15 4 C -0.53 -28.24 9.05 25.60 0.23 -28.01 15 5 H 0.04 2.47 8.06 -2.91 -0.02 2.45 15 6 C 0.02 1.22 5.47 84.66 0.46 1.69 15 7 N -0.94 -55.95 13.96 21.45 0.30 -55.65 15 8 Si 0.93 41.46 26.84 68.60 1.84 43.30 15 9 H -0.27 -11.86 7.11 99.48 0.71 -11.15 15 10 H -0.24 -9.47 6.76 99.48 0.67 -8.80 15 11 H -0.28 -12.40 7.11 99.48 0.71 -11.70 15 12 N -0.72 -27.48 5.24 -322.48 -1.69 -29.17 15 13 C 0.22 7.37 6.64 38.20 0.25 7.62 15 14 C -0.21 -6.96 8.88 22.40 0.20 -6.77 15 15 C -0.06 -1.65 9.82 22.27 0.22 -1.43 15 16 C -0.12 -3.11 6.32 22.34 0.14 -2.97 15 17 Cl -0.08 -1.95 28.95 -2.72 -0.08 -2.03 15 18 C -0.06 -1.41 9.82 22.27 0.22 -1.19 15 19 C -0.20 -5.67 9.90 22.40 0.22 -5.45 15 20 H 0.05 1.71 7.63 -2.39 -0.02 1.69 15 21 H 0.05 1.84 8.14 -2.39 -0.02 1.82 15 22 H 0.05 1.96 7.97 -2.38 -0.02 1.94 15 23 H 0.27 15.03 8.31 -92.71 -0.77 14.26 15 24 H 0.40 14.55 8.61 -92.71 -0.80 13.75 15 25 H 0.12 4.07 6.01 -2.91 -0.02 4.05 15 26 H 0.14 3.35 8.06 -2.91 -0.02 3.33 15 27 H 0.15 2.97 8.06 -2.91 -0.02 2.95 15 28 H 0.14 3.42 8.06 -2.91 -0.02 3.40 15 Total: -1.00 -58.34 255.69 3.41 -54.92 By element: Atomic # 1 Polarization: 19.38 SS G_CDS: 0.34 Total: 19.72 kcal Atomic # 6 Polarization: -33.79 SS G_CDS: 2.70 Total: -31.09 kcal Atomic # 7 Polarization: -83.43 SS G_CDS: -1.39 Total: -84.82 kcal Atomic # 14 Polarization: 41.46 SS G_CDS: 1.84 Total: 43.30 kcal Atomic # 17 Polarization: -1.95 SS G_CDS: -0.08 Total: -2.03 kcal Total: -58.34 3.41 -54.92 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000032009120.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.288 kcal (2) G-P(sol) polarization free energy of solvation -58.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds