Wall clock time and date at job start Mon Mar 30 2020 02:44:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.47418 * 2 1 4 4 C 1.50701 * 109.47225 * 239.99705 * 2 1 3 5 5 H 1.07998 * 120.00522 * 240.00133 * 4 2 1 6 6 C 1.37879 * 119.99823 * 60.00438 * 4 2 1 7 7 N 1.31519 * 119.99909 * 359.97438 * 6 4 2 8 8 Si 1.86802 * 120.00037 * 179.97438 * 6 4 2 9 9 H 1.48494 * 109.46980 * 89.99986 * 8 6 4 10 10 H 1.48501 * 109.46886 * 209.99817 * 8 6 4 11 11 H 1.48494 * 109.46854 * 329.99862 * 8 6 4 12 12 N 1.46499 * 109.46837 * 119.99873 * 2 1 3 13 13 C 1.39744 * 120.00334 * 274.99644 * 12 2 1 14 14 C 1.38896 * 120.06306 * 179.97438 * 13 12 2 15 15 C 1.38107 * 119.93730 * 179.97438 * 14 13 12 16 16 C 1.38378 * 120.06058 * 0.28091 * 15 14 13 17 17 Cl 1.73602 * 119.93923 * 179.69773 * 16 15 14 18 18 C 1.38385 * 120.12543 * 359.44535 * 16 15 14 19 19 C 1.38112 * 120.05717 * 0.55252 * 18 16 15 20 20 H 1.08998 * 109.47121 * 300.00291 * 1 2 3 21 21 H 1.09004 * 109.47020 * 59.99687 * 1 2 3 22 22 H 1.08997 * 109.46998 * 179.97438 * 1 2 3 23 23 H 0.97001 * 120.00105 * 180.02562 * 7 6 4 24 24 H 0.97005 * 120.00071 * 95.00066 * 12 2 1 25 25 H 1.08000 * 120.03113 * 359.96096 * 14 13 12 26 26 H 1.08002 * 119.96597 * 179.97438 * 15 14 13 27 27 H 1.07997 * 119.96850 * 180.25020 * 18 16 15 28 28 H 1.07997 * 120.02593 * 179.70190 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6533 -1.5886 -1.1314 6 6 1.6993 -0.2394 -2.4827 7 7 0.9429 0.8297 -2.6034 8 14 2.3226 -1.1196 -4.0079 9 1 1.3449 -2.1615 -4.4124 10 1 2.4874 -0.1402 -5.1120 11 1 3.6309 -1.7566 -3.7119 12 7 2.0183 -0.6906 1.1962 13 6 2.1518 0.0065 2.4000 14 6 2.6141 -0.6471 3.5350 15 6 2.7456 0.0445 4.7232 16 6 2.4117 1.3859 4.7850 17 17 2.5707 2.2503 6.2821 18 6 1.9562 2.0411 3.6543 19 6 1.8228 1.3544 2.4635 20 1 -0.3633 0.5139 0.8899 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 -1.0276 -0.0005 23 1 0.7083 1.1609 -3.4844 24 1 2.2490 -1.6318 1.1527 25 1 2.8703 -1.6953 3.4884 26 1 3.1046 -0.4634 5.6061 27 1 1.7002 3.0891 3.7045 28 1 1.4627 1.8651 1.5826 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000032009121.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:00 Heat of formation + Delta-G solvation = 8.165839 kcal Electronic energy + Delta-G solvation = -12865.490486 eV Core-core repulsion = 10520.629830 eV Total energy + Delta-G solvation = -2344.860655 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.062 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -38.98555 -36.34619 -35.28017 -32.75510 -30.67597 -29.69228 -27.15577 -25.29904 -22.63250 -21.73377 -20.00914 -17.46200 -16.46408 -15.58425 -15.28131 -14.45461 -13.92033 -13.48011 -13.17991 -13.09946 -12.39847 -12.20735 -11.76097 -11.50546 -11.16866 -11.03920 -10.92033 -10.68830 -10.46255 -10.30486 -10.15345 -9.28565 -9.07484 -8.61939 -8.55514 -6.64953 -6.22652 -4.31283 1.78085 1.92237 2.64383 3.18837 3.26152 3.28565 4.18167 4.24029 4.46288 5.10132 5.23440 5.30825 5.76065 5.90524 6.05428 6.35030 6.53068 6.66098 6.75862 6.80587 6.88768 6.96806 7.13513 7.37135 7.59336 7.76060 7.98327 8.23784 8.58678 8.81054 9.36249 10.83213 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.065310 B = 0.005541 C = 0.005353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 428.618666 B = 5051.951147 C = 5229.658653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.265 3.735 3 H 0.042 0.958 4 C -0.533 4.533 5 H 0.061 0.939 6 C 0.067 3.933 7 N -0.886 5.886 8 Si 0.902 3.098 9 H -0.279 1.279 10 H -0.284 1.284 11 H -0.274 1.274 12 N -0.719 5.719 13 C 0.243 3.757 14 C -0.210 4.210 15 C -0.059 4.059 16 C -0.118 4.118 17 Cl -0.103 7.103 18 C -0.058 4.058 19 C -0.193 4.193 20 H 0.014 0.986 21 H 0.091 0.909 22 H 0.029 0.971 23 H 0.265 0.735 24 H 0.391 0.609 25 H 0.121 0.879 26 H 0.121 0.879 27 H 0.123 0.877 28 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.639 -0.066 10.426 10.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.162 3.838 3 H 0.060 0.940 4 C -0.571 4.571 5 H 0.079 0.921 6 C -0.137 4.137 7 N -0.523 5.523 8 Si 0.729 3.271 9 H -0.205 1.205 10 H -0.210 1.210 11 H -0.198 1.198 12 N -0.340 5.340 13 C 0.132 3.868 14 C -0.234 4.234 15 C -0.079 4.079 16 C -0.147 4.147 17 Cl -0.075 7.075 18 C -0.078 4.078 19 C -0.216 4.216 20 H 0.033 0.967 21 H 0.109 0.891 22 H 0.048 0.952 23 H 0.075 0.925 24 H 0.225 0.775 25 H 0.139 0.861 26 H 0.139 0.861 27 H 0.141 0.859 28 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 1.484 0.227 10.156 10.267 hybrid contribution 0.363 -0.731 -0.771 1.123 sum 1.846 -0.504 9.385 9.578 Atomic orbital electron populations 1.22193 0.98639 0.99663 1.00716 1.18787 0.90800 0.93524 0.80666 0.94049 1.21195 1.32348 1.13319 0.90239 0.92081 1.24876 0.94732 0.94946 0.99098 1.69870 1.35929 1.22492 1.24043 0.86430 0.79233 0.79314 0.82073 1.20502 1.20987 1.19836 1.45703 1.68513 1.12186 1.07553 1.18136 0.90278 0.91582 0.86792 1.20464 1.10726 1.00095 0.92096 1.20575 0.97762 0.92061 0.97502 1.20386 1.13899 0.93325 0.87115 1.98294 1.97172 1.77503 1.34506 1.20709 0.96837 0.99372 0.90883 1.20768 1.08896 0.93487 0.98445 0.96692 0.89089 0.95174 0.92492 0.77520 0.86074 0.86093 0.85904 0.84761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.54 9.21 37.16 0.34 -3.20 15 2 C 0.26 6.23 2.25 -69.08 -0.16 6.07 15 3 H 0.04 1.06 6.48 -51.93 -0.34 0.73 15 4 C -0.53 -13.69 8.73 -34.44 -0.30 -13.99 15 5 H 0.06 1.54 7.74 -52.49 -0.41 1.13 15 6 C 0.07 1.73 5.30 -17.82 -0.09 1.64 15 7 N -0.89 -23.83 11.32 55.43 0.63 -23.21 15 8 Si 0.90 20.24 29.54 -169.99 -5.02 15.21 15 9 H -0.28 -6.21 7.11 56.52 0.40 -5.81 15 10 H -0.28 -6.37 7.11 56.52 0.40 -5.96 15 11 H -0.27 -6.09 7.11 56.52 0.40 -5.69 15 12 N -0.72 -14.40 5.24 -53.28 -0.28 -14.68 15 13 C 0.24 4.48 6.64 -83.76 -0.56 3.93 15 14 C -0.21 -3.35 9.90 -39.39 -0.39 -3.74 15 15 C -0.06 -0.89 9.82 -39.58 -0.39 -1.28 15 16 C -0.12 -1.84 6.32 -39.48 -0.25 -2.09 15 17 Cl -0.10 -1.43 28.95 -51.86 -1.50 -2.93 15 18 C -0.06 -0.95 9.82 -39.57 -0.39 -1.33 15 19 C -0.19 -3.52 8.85 -39.39 -0.35 -3.87 15 20 H 0.01 0.31 7.72 -51.93 -0.40 -0.10 15 21 H 0.09 2.29 6.07 -51.93 -0.32 1.98 15 22 H 0.03 0.67 8.14 -51.93 -0.42 0.25 15 23 H 0.27 6.80 8.31 -40.82 -0.34 6.47 15 24 H 0.39 7.28 8.55 -40.82 -0.35 6.93 15 25 H 0.12 1.69 8.06 -52.49 -0.42 1.27 15 26 H 0.12 1.52 8.06 -52.49 -0.42 1.10 15 27 H 0.12 1.75 8.06 -52.49 -0.42 1.33 15 28 H 0.13 2.60 6.12 -52.49 -0.32 2.28 15 LS Contribution 256.51 15.07 3.87 3.87 Total: -1.00 -25.90 256.51 -7.79 -33.70 By element: Atomic # 1 Polarization: 8.85 SS G_CDS: -2.95 Total: 5.89 kcal Atomic # 6 Polarization: -15.33 SS G_CDS: -2.53 Total: -17.85 kcal Atomic # 7 Polarization: -38.24 SS G_CDS: 0.35 Total: -37.89 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -5.02 Total: 15.21 kcal Atomic # 17 Polarization: -1.43 SS G_CDS: -1.50 Total: -2.93 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -25.90 -7.79 -33.70 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000032009121.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.863 kcal (2) G-P(sol) polarization free energy of solvation -25.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.697 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds