Wall clock time and date at job start Mon Mar 30 2020 02:43:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.47418 * 2 1 4 4 C 1.50701 * 109.47225 * 239.99705 * 2 1 3 5 5 H 1.07998 * 120.00522 * 240.00133 * 4 2 1 6 6 C 1.37879 * 119.99823 * 60.00438 * 4 2 1 7 7 N 1.31519 * 119.99909 * 359.97438 * 6 4 2 8 8 Si 1.86802 * 120.00037 * 179.97438 * 6 4 2 9 9 H 1.48494 * 109.46980 * 89.99986 * 8 6 4 10 10 H 1.48501 * 109.46886 * 209.99817 * 8 6 4 11 11 H 1.48494 * 109.46854 * 329.99862 * 8 6 4 12 12 N 1.46499 * 109.46837 * 119.99873 * 2 1 3 13 13 C 1.39744 * 120.00334 * 274.99644 * 12 2 1 14 14 C 1.38896 * 120.06306 * 179.97438 * 13 12 2 15 15 C 1.38107 * 119.93730 * 179.97438 * 14 13 12 16 16 C 1.38378 * 120.06058 * 0.28091 * 15 14 13 17 17 Cl 1.73602 * 119.93923 * 179.69773 * 16 15 14 18 18 C 1.38385 * 120.12543 * 359.44535 * 16 15 14 19 19 C 1.38112 * 120.05717 * 0.55252 * 18 16 15 20 20 H 1.08998 * 109.47121 * 300.00291 * 1 2 3 21 21 H 1.09004 * 109.47020 * 59.99687 * 1 2 3 22 22 H 1.08997 * 109.46998 * 179.97438 * 1 2 3 23 23 H 0.97001 * 120.00105 * 180.02562 * 7 6 4 24 24 H 0.97005 * 120.00071 * 95.00066 * 12 2 1 25 25 H 1.08000 * 120.03113 * 359.96096 * 14 13 12 26 26 H 1.08002 * 119.96597 * 179.97438 * 15 14 13 27 27 H 1.07997 * 119.96850 * 180.25020 * 18 16 15 28 28 H 1.07997 * 120.02593 * 179.70190 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6533 -1.5886 -1.1314 6 6 1.6993 -0.2394 -2.4827 7 7 0.9429 0.8297 -2.6034 8 14 2.3226 -1.1196 -4.0079 9 1 1.3449 -2.1615 -4.4124 10 1 2.4874 -0.1402 -5.1120 11 1 3.6309 -1.7566 -3.7119 12 7 2.0183 -0.6906 1.1962 13 6 2.1518 0.0065 2.4000 14 6 2.6141 -0.6471 3.5350 15 6 2.7456 0.0445 4.7232 16 6 2.4117 1.3859 4.7850 17 17 2.5707 2.2503 6.2821 18 6 1.9562 2.0411 3.6543 19 6 1.8228 1.3544 2.4635 20 1 -0.3633 0.5139 0.8899 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 -1.0276 -0.0005 23 1 0.7083 1.1609 -3.4844 24 1 2.2490 -1.6318 1.1527 25 1 2.8703 -1.6953 3.4884 26 1 3.1046 -0.4634 5.6061 27 1 1.7002 3.0891 3.7045 28 1 1.4627 1.8651 1.5826 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000032009121.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:59 Heat of formation + Delta-G solvation = -5.297942 kcal Electronic energy + Delta-G solvation = -12866.074319 eV Core-core repulsion = 10520.629830 eV Total energy + Delta-G solvation = -2345.444489 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.062 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.34471 -37.71090 -36.76063 -34.54056 -32.04411 -31.31068 -28.67990 -27.25705 -24.04617 -23.18797 -21.63605 -19.08601 -17.99699 -17.09714 -16.98124 -16.03947 -15.35675 -15.04449 -14.58082 -14.43635 -14.05947 -13.80274 -13.22616 -13.20775 -12.87046 -12.60061 -12.46309 -12.24811 -12.20706 -11.98174 -11.53968 -11.08097 -10.71802 -10.43252 -9.89700 -8.22658 -8.08024 -6.34801 0.49173 0.60280 1.41697 1.42292 1.43563 1.53107 2.36451 2.89238 2.91485 3.11317 3.98146 4.08937 4.48989 4.59681 4.69274 4.76193 4.96619 5.09330 5.11211 5.24794 5.44591 5.46113 5.50606 5.62065 5.80841 5.95250 6.09906 6.51463 6.80420 7.17066 7.37706 8.85718 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.065310 B = 0.005541 C = 0.005353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 428.618666 B = 5051.951147 C = 5229.658653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.274 3.726 3 H 0.013 0.987 4 C -0.549 4.549 5 H 0.062 0.938 6 C 0.019 3.981 7 N -0.913 5.913 8 Si 0.965 3.035 9 H -0.274 1.274 10 H -0.284 1.284 11 H -0.269 1.269 12 N -0.725 5.725 13 C 0.220 3.780 14 C -0.202 4.202 15 C -0.055 4.055 16 C -0.117 4.117 17 Cl -0.083 7.083 18 C -0.061 4.061 19 C -0.212 4.212 20 H 0.024 0.976 21 H 0.067 0.933 22 H 0.029 0.971 23 H 0.266 0.734 24 H 0.397 0.603 25 H 0.144 0.856 26 H 0.152 0.848 27 H 0.138 0.862 28 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.378 -0.888 11.772 12.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.170 3.830 3 H 0.031 0.969 4 C -0.587 4.587 5 H 0.081 0.919 6 C -0.181 4.181 7 N -0.551 5.551 8 Si 0.790 3.210 9 H -0.199 1.199 10 H -0.209 1.209 11 H -0.194 1.194 12 N -0.349 5.349 13 C 0.112 3.888 14 C -0.225 4.225 15 C -0.075 4.075 16 C -0.146 4.146 17 Cl -0.055 7.055 18 C -0.080 4.080 19 C -0.235 4.235 20 H 0.043 0.957 21 H 0.085 0.915 22 H 0.048 0.952 23 H 0.075 0.925 24 H 0.232 0.768 25 H 0.162 0.838 26 H 0.169 0.831 27 H 0.156 0.844 28 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 2.232 -0.593 11.550 11.778 hybrid contribution 0.155 -0.404 -1.018 1.106 sum 2.386 -0.997 10.532 10.845 Atomic orbital electron populations 1.22007 0.98627 0.99277 0.99968 1.18398 0.90726 0.92170 0.81684 0.96937 1.21545 1.32349 1.13467 0.91335 0.91936 1.25663 0.94936 0.95610 1.01898 1.69994 1.36870 1.23676 1.24589 0.85454 0.78803 0.78207 0.78551 1.19946 1.20917 1.19352 1.45335 1.69980 1.12353 1.07216 1.18363 0.91664 0.91780 0.87003 1.20721 1.09242 1.01181 0.91331 1.20924 0.96616 0.91821 0.98104 1.20574 1.12599 0.93842 0.87618 1.98306 1.97019 1.77155 1.33011 1.20850 0.96550 1.00125 0.90462 1.20721 1.10204 0.93908 0.98658 0.95676 0.91478 0.95172 0.92501 0.76810 0.83805 0.83057 0.84435 0.86936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.60 9.21 71.98 0.66 -5.94 15 2 C 0.27 13.21 2.25 44.25 0.10 13.31 15 3 H 0.01 0.69 6.48 -2.39 -0.02 0.67 15 4 C -0.55 -28.51 8.73 25.60 0.22 -28.28 15 5 H 0.06 3.15 7.74 -2.91 -0.02 3.12 15 6 C 0.02 1.01 5.30 84.65 0.45 1.46 15 7 N -0.91 -50.13 11.32 21.45 0.24 -49.88 15 8 Si 0.96 41.53 29.54 68.60 2.03 43.56 15 9 H -0.27 -11.49 7.11 99.48 0.71 -10.79 15 10 H -0.28 -12.08 7.11 99.48 0.71 -11.38 15 11 H -0.27 -11.28 7.11 99.48 0.71 -10.58 15 12 N -0.73 -29.13 5.24 -322.47 -1.69 -30.82 15 13 C 0.22 8.00 6.64 38.19 0.25 8.25 15 14 C -0.20 -5.96 9.90 22.40 0.22 -5.74 15 15 C -0.06 -1.48 9.82 22.27 0.22 -1.26 15 16 C -0.12 -3.36 6.32 22.34 0.14 -3.22 15 17 Cl -0.08 -2.07 28.95 -2.72 -0.08 -2.15 15 18 C -0.06 -1.89 9.82 22.27 0.22 -1.67 15 19 C -0.21 -7.78 8.85 22.40 0.20 -7.58 15 20 H 0.02 1.08 7.72 -2.39 -0.02 1.06 15 21 H 0.07 3.49 6.07 -2.38 -0.01 3.47 15 22 H 0.03 1.36 8.14 -2.39 -0.02 1.34 15 23 H 0.27 13.87 8.31 -92.71 -0.77 13.10 15 24 H 0.40 14.62 8.55 -92.70 -0.79 13.82 15 25 H 0.14 3.56 8.06 -2.91 -0.02 3.54 15 26 H 0.15 3.14 8.06 -2.91 -0.02 3.11 15 27 H 0.14 3.78 8.06 -2.91 -0.02 3.75 15 28 H 0.11 4.58 6.12 -2.91 -0.02 4.56 15 Total: -1.00 -54.70 256.51 3.57 -51.14 By element: Atomic # 1 Polarization: 18.44 SS G_CDS: 0.38 Total: 18.82 kcal Atomic # 6 Polarization: -33.35 SS G_CDS: 2.69 Total: -30.66 kcal Atomic # 7 Polarization: -79.26 SS G_CDS: -1.45 Total: -80.71 kcal Atomic # 14 Polarization: 41.53 SS G_CDS: 2.03 Total: 43.56 kcal Atomic # 17 Polarization: -2.07 SS G_CDS: -0.08 Total: -2.15 kcal Total: -54.70 3.57 -51.14 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000032009121.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.841 kcal (2) G-P(sol) polarization free energy of solvation -54.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds