Wall clock time and date at job start Mon Mar 30 2020 02:42:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.46867 * 2 1 4 4 N 1.46503 * 109.47226 * 240.00657 * 2 1 3 5 5 C 1.36933 * 120.00077 * 84.99418 * 4 2 1 6 6 H 1.07996 * 120.00140 * 0.02562 * 5 4 2 7 7 C 1.38820 * 119.99839 * 180.02562 * 5 4 2 8 8 N 1.31621 * 120.00117 * 180.02562 * 7 5 4 9 9 Si 1.86799 * 119.99858 * 0.02562 * 7 5 4 10 10 H 1.48500 * 109.47023 * 90.00386 * 9 7 5 11 11 H 1.48500 * 109.47066 * 209.99984 * 9 7 5 12 12 H 1.48494 * 109.47283 * 329.99900 * 9 7 5 13 13 C 1.50693 * 109.47566 * 120.00247 * 2 1 3 14 14 C 1.38265 * 119.99277 * 79.97513 * 13 2 1 15 15 C 1.38215 * 120.02666 * 180.02562 * 14 13 2 16 16 C 1.38234 * 120.01496 * 0.02562 * 15 14 13 17 17 C 1.38327 * 119.98569 * 359.76615 * 16 15 14 18 18 Cl 1.73604 * 120.01716 * 180.27842 * 17 16 15 19 19 C 1.38195 * 119.99579 * 260.00508 * 13 2 1 20 20 H 1.09003 * 109.47052 * 179.97438 * 1 2 3 21 21 H 1.08997 * 109.47032 * 299.99432 * 1 2 3 22 22 H 1.08997 * 109.47388 * 59.99553 * 1 2 3 23 23 H 0.97003 * 119.99779 * 265.00421 * 4 2 1 24 24 H 0.96989 * 120.00179 * 179.97438 * 8 7 5 25 25 H 1.08007 * 119.98705 * 0.02725 * 14 13 2 26 26 H 1.08000 * 119.99310 * 180.02562 * 15 14 13 27 27 H 1.08006 * 120.00805 * 180.02562 * 16 15 14 28 28 H 1.08002 * 120.00237 * 359.97104 * 19 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6905 -1.1963 5 6 2.1490 -0.0073 -2.3758 6 1 1.8925 1.0407 -2.4241 7 6 2.6113 -0.6617 -3.5094 8 7 2.7374 -0.0050 -4.6430 9 14 3.0543 -2.4745 -3.4259 10 1 1.8565 -3.2920 -3.7455 11 1 4.1295 -2.7670 -4.4075 12 1 3.5292 -2.8056 -2.0584 13 6 2.0324 -0.7104 1.2303 14 6 2.0663 -2.0922 1.2652 15 6 2.5265 -2.7445 2.3935 16 6 2.9527 -2.0157 3.4881 17 6 2.9230 -0.6332 3.4522 18 17 3.4648 0.2829 4.8237 19 6 2.4586 0.0193 2.3238 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3633 0.5137 0.8900 22 1 -0.3634 0.5139 -0.8899 23 1 2.2490 -1.6317 -1.1528 24 1 3.0607 -0.4621 -5.4350 25 1 1.7331 -2.6621 0.4104 26 1 2.5532 -3.8239 2.4200 27 1 3.3126 -2.5256 4.3696 28 1 2.4320 1.0986 2.2965 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037980630.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:37 Heat of formation + Delta-G solvation = 24.966960 kcal Electronic energy + Delta-G solvation = -12965.093619 eV Core-core repulsion = 10620.961515 eV Total energy + Delta-G solvation = -2344.132104 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.062 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.39492 -36.60578 -35.45409 -32.35728 -30.77369 -30.04709 -28.49952 -24.15375 -22.85692 -22.24395 -19.94872 -18.07872 -16.61478 -15.47754 -15.31272 -14.37172 -14.21124 -13.66353 -13.53450 -13.11032 -12.68921 -12.42287 -11.98092 -11.73575 -11.44247 -11.20341 -11.05765 -10.92225 -10.80203 -10.36943 -10.08716 -9.62905 -9.05901 -8.74899 -8.50944 -7.34749 -5.81255 -3.17518 1.29435 1.40597 2.16640 3.33947 3.35882 3.42132 3.77295 4.54919 4.85146 4.94547 5.19961 5.28350 5.43339 5.49526 5.56850 5.70418 5.96086 6.07431 6.14834 6.27073 6.34252 6.47532 6.50906 6.80317 6.88081 6.99970 7.93673 8.37236 9.14463 9.86772 10.05813 11.36843 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.038511 B = 0.007059 C = 0.006659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 726.881304 B = 3965.797855 C = 4204.031255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.211 3.789 3 H 0.067 0.933 4 N -0.745 5.745 5 C -0.245 4.245 6 H 0.092 0.908 7 C 0.007 3.993 8 N -0.932 5.932 9 Si 0.880 3.120 10 H -0.283 1.283 11 H -0.290 1.290 12 H -0.276 1.276 13 C -0.055 4.055 14 C -0.108 4.108 15 C -0.108 4.108 16 C -0.125 4.125 17 C -0.033 4.033 18 Cl -0.082 7.082 19 C -0.107 4.107 20 H 0.047 0.953 21 H 0.042 0.958 22 H 0.064 0.936 23 H 0.362 0.638 24 H 0.260 0.740 25 H 0.127 0.873 26 H 0.128 0.872 27 H 0.127 0.873 28 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.197 -3.575 16.888 17.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.102 3.898 3 H 0.085 0.915 4 N -0.389 5.389 5 C -0.375 4.375 6 H 0.110 0.890 7 C -0.189 4.189 8 N -0.579 5.579 9 Si 0.710 3.290 10 H -0.209 1.209 11 H -0.216 1.216 12 H -0.203 1.203 13 C -0.056 4.056 14 C -0.126 4.126 15 C -0.126 4.126 16 C -0.144 4.144 17 C -0.059 4.059 18 Cl -0.054 7.054 19 C -0.126 4.126 20 H 0.067 0.933 21 H 0.061 0.939 22 H 0.083 0.917 23 H 0.196 0.804 24 H 0.070 0.930 25 H 0.145 0.855 26 H 0.146 0.854 27 H 0.145 0.855 28 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -1.131 -3.305 16.799 17.158 hybrid contribution 0.454 -1.269 0.020 1.348 sum -0.677 -4.573 16.819 17.442 Atomic orbital electron populations 1.22391 0.97459 1.01291 1.00866 1.19198 0.92451 0.95298 0.82827 0.91514 1.42865 1.79822 1.09485 1.06731 1.19066 1.37324 0.95780 0.85321 0.88982 1.24652 1.01209 0.97486 0.95545 1.69689 1.52379 1.35565 1.00271 0.86612 0.78268 0.86922 0.77180 1.20946 1.21587 1.20256 1.20448 0.95807 0.93875 0.95503 1.21150 0.99005 0.94441 0.98023 1.21072 0.98754 0.99910 0.92851 1.20929 1.02063 0.91767 0.99592 1.20867 1.03331 0.92087 0.89640 1.98347 1.88784 1.74567 1.43665 1.20938 0.99513 1.00553 0.91622 0.93344 0.93875 0.91717 0.80430 0.92971 0.85516 0.85400 0.85461 0.84944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.73 9.47 37.16 0.35 -2.38 15 2 C 0.21 4.00 3.09 -69.08 -0.21 3.79 15 3 H 0.07 1.29 7.94 -51.93 -0.41 0.88 15 4 N -0.75 -17.26 4.87 -54.55 -0.27 -17.53 15 5 C -0.25 -6.78 10.41 -15.06 -0.16 -6.94 15 6 H 0.09 2.71 8.06 -52.49 -0.42 2.29 15 7 C 0.01 0.21 5.50 -17.43 -0.10 0.11 15 8 N -0.93 -28.95 13.97 55.49 0.78 -28.17 15 9 Si 0.88 21.77 27.74 -169.99 -4.71 17.06 15 10 H -0.28 -6.91 7.11 56.52 0.40 -6.50 15 11 H -0.29 -7.29 7.11 56.52 0.40 -6.89 15 12 H -0.28 -6.44 6.52 56.52 0.37 -6.07 15 13 C -0.06 -0.91 4.95 -104.63 -0.52 -1.43 15 14 C -0.11 -1.67 9.05 -39.58 -0.36 -2.03 15 15 C -0.11 -1.40 10.04 -39.59 -0.40 -1.80 15 16 C -0.12 -1.58 9.83 -39.55 -0.39 -1.97 15 17 C -0.03 -0.45 6.32 -39.50 -0.25 -0.70 15 18 Cl -0.08 -1.01 28.96 -51.86 -1.50 -2.51 15 19 C -0.11 -1.59 9.45 -39.55 -0.37 -1.96 15 20 H 0.05 0.80 8.14 -51.93 -0.42 0.38 15 21 H 0.04 0.62 8.14 -51.93 -0.42 0.20 15 22 H 0.06 1.19 8.14 -51.93 -0.42 0.77 15 23 H 0.36 8.20 3.93 -40.82 -0.16 8.04 15 24 H 0.26 7.70 8.31 -40.82 -0.34 7.37 15 25 H 0.13 1.99 6.92 -52.48 -0.36 1.63 15 26 H 0.13 1.32 8.06 -52.49 -0.42 0.90 15 27 H 0.13 1.32 8.06 -52.48 -0.42 0.89 15 28 H 0.13 1.80 8.04 -52.49 -0.42 1.38 15 LS Contribution 258.13 15.07 3.89 3.89 Total: -1.00 -30.02 258.13 -7.28 -37.31 By element: Atomic # 1 Polarization: 8.33 SS G_CDS: -3.06 Total: 5.27 kcal Atomic # 6 Polarization: -12.91 SS G_CDS: -2.40 Total: -15.31 kcal Atomic # 7 Polarization: -46.21 SS G_CDS: 0.51 Total: -45.70 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -4.71 Total: 17.06 kcal Atomic # 17 Polarization: -1.01 SS G_CDS: -1.50 Total: -2.51 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -30.02 -7.28 -37.31 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037980630.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.272 kcal (2) G-P(sol) polarization free energy of solvation -30.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.305 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds