Wall clock time and date at job start Mon Mar 30 2020 02:42:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.46867 * 2 1 4 4 N 1.46503 * 109.47226 * 240.00657 * 2 1 3 5 5 C 1.36933 * 120.00077 * 84.99418 * 4 2 1 6 6 H 1.07996 * 120.00140 * 0.02562 * 5 4 2 7 7 C 1.38820 * 119.99839 * 180.02562 * 5 4 2 8 8 N 1.31621 * 120.00117 * 180.02562 * 7 5 4 9 9 Si 1.86799 * 119.99858 * 0.02562 * 7 5 4 10 10 H 1.48500 * 109.47023 * 90.00386 * 9 7 5 11 11 H 1.48500 * 109.47066 * 209.99984 * 9 7 5 12 12 H 1.48494 * 109.47283 * 329.99900 * 9 7 5 13 13 C 1.50693 * 109.47566 * 120.00247 * 2 1 3 14 14 C 1.38265 * 119.99277 * 79.97513 * 13 2 1 15 15 C 1.38215 * 120.02666 * 180.02562 * 14 13 2 16 16 C 1.38234 * 120.01496 * 0.02562 * 15 14 13 17 17 C 1.38327 * 119.98569 * 359.76615 * 16 15 14 18 18 Cl 1.73604 * 120.01716 * 180.27842 * 17 16 15 19 19 C 1.38195 * 119.99579 * 260.00508 * 13 2 1 20 20 H 1.09003 * 109.47052 * 179.97438 * 1 2 3 21 21 H 1.08997 * 109.47032 * 299.99432 * 1 2 3 22 22 H 1.08997 * 109.47388 * 59.99553 * 1 2 3 23 23 H 0.97003 * 119.99779 * 265.00421 * 4 2 1 24 24 H 0.96989 * 120.00179 * 179.97438 * 8 7 5 25 25 H 1.08007 * 119.98705 * 0.02725 * 14 13 2 26 26 H 1.08000 * 119.99310 * 180.02562 * 15 14 13 27 27 H 1.08006 * 120.00805 * 180.02562 * 16 15 14 28 28 H 1.08002 * 120.00237 * 359.97104 * 19 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6905 -1.1963 5 6 2.1490 -0.0073 -2.3758 6 1 1.8925 1.0407 -2.4241 7 6 2.6113 -0.6617 -3.5094 8 7 2.7374 -0.0050 -4.6430 9 14 3.0543 -2.4745 -3.4259 10 1 1.8565 -3.2920 -3.7455 11 1 4.1295 -2.7670 -4.4075 12 1 3.5292 -2.8056 -2.0584 13 6 2.0324 -0.7104 1.2303 14 6 2.0663 -2.0922 1.2652 15 6 2.5265 -2.7445 2.3935 16 6 2.9527 -2.0157 3.4881 17 6 2.9230 -0.6332 3.4522 18 17 3.4648 0.2829 4.8237 19 6 2.4586 0.0193 2.3238 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3633 0.5137 0.8900 22 1 -0.3634 0.5139 -0.8899 23 1 2.2490 -1.6317 -1.1528 24 1 3.0607 -0.4621 -5.4350 25 1 1.7331 -2.6621 0.4104 26 1 2.5532 -3.8239 2.4200 27 1 3.3126 -2.5256 4.3696 28 1 2.4320 1.0986 2.2965 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037980630.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:37 Heat of formation + Delta-G solvation = 7.385517 kcal Electronic energy + Delta-G solvation = -12965.856008 eV Core-core repulsion = 10620.961515 eV Total energy + Delta-G solvation = -2344.894493 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.062 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.55260 -37.77012 -36.92058 -34.25908 -32.11207 -31.47708 -29.93674 -25.91509 -24.20647 -23.50827 -21.40019 -19.97960 -17.89572 -16.94318 -16.46657 -16.10573 -15.70188 -14.99063 -14.78556 -14.51894 -14.27674 -13.98993 -13.61905 -13.03019 -12.84641 -12.67942 -12.40508 -12.30346 -12.17470 -11.94889 -11.78982 -11.52808 -11.06166 -9.86700 -9.63575 -9.35322 -8.02651 -5.36724 0.19699 0.31953 1.13947 1.36366 1.40206 1.47241 2.47912 2.66666 3.29310 3.56668 3.74604 3.92238 4.14073 4.31174 4.38931 4.48072 4.67187 4.76349 4.90763 4.99077 5.11224 5.23933 5.34912 5.46480 5.60470 5.76933 5.85608 6.21195 7.06337 7.80728 8.00852 9.18754 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.038511 B = 0.007059 C = 0.006659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 726.881304 B = 3965.797855 C = 4204.031255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.206 3.794 3 H 0.054 0.946 4 N -0.748 5.748 5 C -0.230 4.230 6 H 0.059 0.941 7 C -0.063 4.063 8 N -0.983 5.983 9 Si 0.949 3.051 10 H -0.275 1.275 11 H -0.296 1.296 12 H -0.252 1.252 13 C -0.073 4.073 14 C -0.123 4.123 15 C -0.100 4.100 16 C -0.116 4.116 17 C -0.039 4.039 18 Cl -0.070 7.070 19 C -0.114 4.114 20 H 0.053 0.947 21 H 0.070 0.930 22 H 0.041 0.959 23 H 0.366 0.634 24 H 0.258 0.742 25 H 0.122 0.878 26 H 0.160 0.840 27 H 0.156 0.844 28 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.930 -5.605 19.462 20.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.099 3.901 3 H 0.072 0.928 4 N -0.393 5.393 5 C -0.361 4.361 6 H 0.077 0.923 7 C -0.254 4.254 8 N -0.634 5.634 9 Si 0.776 3.224 10 H -0.201 1.201 11 H -0.223 1.223 12 H -0.176 1.176 13 C -0.074 4.074 14 C -0.141 4.141 15 C -0.118 4.118 16 C -0.135 4.135 17 C -0.065 4.065 18 Cl -0.041 7.041 19 C -0.133 4.133 20 H 0.073 0.927 21 H 0.089 0.911 22 H 0.060 0.940 23 H 0.201 0.799 24 H 0.067 0.933 25 H 0.140 0.860 26 H 0.178 0.822 27 H 0.174 0.826 28 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -0.885 -5.332 19.445 20.182 hybrid contribution 0.348 -0.536 -0.640 0.904 sum -0.537 -5.868 18.805 19.707 Atomic orbital electron populations 1.22241 0.95931 1.01735 1.01103 1.19313 0.93448 0.94685 0.82683 0.92805 1.42845 1.80070 1.09702 1.06648 1.19026 1.35356 0.94630 0.87089 0.92293 1.25470 1.02237 1.02561 0.95142 1.69874 1.54595 1.37733 1.01180 0.85493 0.77891 0.80882 0.78110 1.20073 1.22308 1.17607 1.20139 0.97891 0.94483 0.94878 1.21238 0.99893 0.93958 0.99042 1.21390 0.97177 1.01518 0.91704 1.21308 1.00510 0.91322 1.00353 1.20985 1.03028 0.92835 0.89666 1.98355 1.88563 1.74437 1.42735 1.20976 0.99675 1.00865 0.91817 0.92747 0.91104 0.93960 0.79900 0.93336 0.86008 0.82243 0.82619 0.84585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.04 9.47 71.98 0.68 -4.36 15 2 C 0.21 7.76 3.09 44.24 0.14 7.90 15 3 H 0.05 2.13 7.94 -2.39 -0.02 2.11 15 4 N -0.75 -34.49 4.87 -326.50 -1.59 -36.08 15 5 C -0.23 -13.03 10.41 84.04 0.87 -12.15 15 6 H 0.06 3.65 8.06 -2.91 -0.02 3.63 15 7 C -0.06 -3.68 5.50 84.86 0.47 -3.22 15 8 N -0.98 -63.01 13.97 21.65 0.30 -62.70 15 9 Si 0.95 44.97 27.74 68.60 1.90 46.88 15 10 H -0.27 -12.58 7.11 99.48 0.71 -11.87 15 11 H -0.30 -14.29 7.11 99.48 0.71 -13.58 15 12 H -0.25 -10.73 6.52 99.48 0.65 -10.09 15 13 C -0.07 -2.29 4.95 -19.87 -0.10 -2.39 15 14 C -0.12 -3.50 9.05 22.27 0.20 -3.29 15 15 C -0.10 -2.21 10.04 22.26 0.22 -1.98 15 16 C -0.12 -2.47 9.83 22.29 0.22 -2.25 15 17 C -0.04 -0.94 6.32 22.32 0.14 -0.80 15 18 Cl -0.07 -1.52 28.96 -2.72 -0.08 -1.60 15 19 C -0.11 -3.19 9.45 22.29 0.21 -2.98 15 20 H 0.05 1.74 8.14 -2.39 -0.02 1.72 15 21 H 0.07 1.96 8.14 -2.39 -0.02 1.94 15 22 H 0.04 1.57 8.14 -2.39 -0.02 1.55 15 23 H 0.37 16.09 3.93 -92.71 -0.36 15.72 15 24 H 0.26 15.74 8.31 -92.72 -0.77 14.97 15 25 H 0.12 3.54 6.92 -2.91 -0.02 3.52 15 26 H 0.16 2.49 8.06 -2.91 -0.02 2.47 15 27 H 0.16 2.43 8.06 -2.91 -0.02 2.40 15 28 H 0.14 3.57 8.04 -2.91 -0.02 3.54 15 Total: -1.00 -65.34 258.13 4.33 -61.02 By element: Atomic # 1 Polarization: 17.30 SS G_CDS: 0.74 Total: 18.04 kcal Atomic # 6 Polarization: -28.60 SS G_CDS: 3.06 Total: -25.54 kcal Atomic # 7 Polarization: -97.50 SS G_CDS: -1.29 Total: -98.79 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 1.90 Total: 46.88 kcal Atomic # 17 Polarization: -1.52 SS G_CDS: -0.08 Total: -1.60 kcal Total: -65.34 4.33 -61.02 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037980630.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.401 kcal (2) G-P(sol) polarization free energy of solvation -65.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.015 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds