Wall clock time and date at job start Mon Mar 30 2020 02:42:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08994 * 109.47567 * 2 1 4 4 N 1.46505 * 109.46692 * 119.99923 * 2 1 3 5 5 C 1.36931 * 119.99788 * 274.99780 * 4 2 1 6 6 H 1.08002 * 120.00438 * 0.02562 * 5 4 2 7 7 C 1.38817 * 119.99680 * 179.72358 * 5 4 2 8 8 N 1.31617 * 119.99873 * 180.27450 * 7 5 4 9 9 Si 1.86800 * 120.00209 * 0.27770 * 7 5 4 10 10 H 1.48498 * 109.47118 * 89.99559 * 9 7 5 11 11 H 1.48499 * 109.47134 * 210.00079 * 9 7 5 12 12 H 1.48507 * 109.46904 * 329.99901 * 9 7 5 13 13 C 1.50696 * 109.47149 * 239.99505 * 2 1 3 14 14 C 1.38270 * 119.99694 * 279.72998 * 13 2 1 15 15 C 1.38215 * 120.02756 * 179.76778 * 14 13 2 16 16 C 1.38239 * 120.01110 * 0.50877 * 15 14 13 17 17 C 1.38327 * 119.98645 * 359.74197 * 16 15 14 18 18 Cl 1.73608 * 120.00979 * 180.02562 * 17 16 15 19 19 C 1.38192 * 119.99284 * 100.00200 * 13 2 1 20 20 H 1.08991 * 109.47054 * 300.00703 * 1 2 3 21 21 H 1.09004 * 109.46242 * 60.00005 * 1 2 3 22 22 H 1.08994 * 109.47567 * 179.97438 * 1 2 3 23 23 H 0.97000 * 119.99792 * 94.99575 * 4 2 1 24 24 H 0.97000 * 120.00553 * 180.02562 * 8 7 5 25 25 H 1.08006 * 119.98177 * 0.02562 * 14 13 2 26 26 H 1.08002 * 119.99103 * 180.25437 * 15 14 13 27 27 H 1.08005 * 120.00134 * 179.72595 * 16 15 14 28 28 H 1.08002 * 120.00723 * 0.02562 * 19 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 7 2.0183 -0.6906 1.1963 5 6 2.1491 -0.0075 2.3757 6 1 1.8919 1.0404 2.4243 7 6 2.6062 -0.6633 3.5106 8 7 2.7268 -0.0080 4.6457 9 14 3.0504 -2.4758 3.4268 10 1 4.4848 -2.6179 3.0695 11 1 2.8044 -3.1073 4.7481 12 1 2.2151 -3.1430 2.3961 13 6 2.0324 -0.7105 -1.2304 14 6 2.0720 -2.0922 -1.2630 15 6 2.5281 -2.7446 -2.3929 16 6 2.9548 -2.0157 -3.4872 17 6 2.9203 -0.6333 -3.4533 18 17 3.4555 0.2826 -4.8275 19 6 2.4586 0.0192 -2.3238 20 1 -0.3633 0.5139 0.8898 21 1 -0.3632 0.5139 -0.8901 22 1 -0.3634 -1.0276 -0.0005 23 1 2.2489 -1.6318 1.1527 24 1 3.0466 -0.4660 5.4386 25 1 1.7425 -2.6620 -0.4066 26 1 2.5549 -3.8240 -2.4192 27 1 3.3154 -2.5256 -4.3684 28 1 2.4322 1.0985 -2.2965 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037980631.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:38 Heat of formation + Delta-G solvation = 24.953140 kcal Electronic energy + Delta-G solvation = -12964.476560 eV Core-core repulsion = 10620.343857 eV Total energy + Delta-G solvation = -2344.132703 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.062 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.39678 -36.60691 -35.45493 -32.35750 -30.77589 -30.04663 -28.50105 -24.15484 -22.85844 -22.24372 -19.94929 -18.08158 -16.61375 -15.47627 -15.31441 -14.37130 -14.21151 -13.66773 -13.53202 -13.11332 -12.67750 -12.44564 -11.98467 -11.73245 -11.44120 -11.20522 -11.04909 -10.92350 -10.78946 -10.37505 -10.10180 -9.62848 -9.05350 -8.75233 -8.51426 -7.34711 -5.81263 -3.17521 1.29134 1.40339 2.16471 3.32725 3.36473 3.42093 3.77041 4.54785 4.85015 4.94375 5.20257 5.27256 5.43429 5.50377 5.57050 5.70292 5.96011 6.07292 6.14712 6.26790 6.34224 6.47450 6.51046 6.80226 6.88146 6.99869 7.93648 8.37192 9.14439 9.86758 10.05827 11.36832 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.038605 B = 0.007057 C = 0.006653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 725.121050 B = 3966.981100 C = 4207.668708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.211 3.789 3 H 0.067 0.933 4 N -0.745 5.745 5 C -0.245 4.245 6 H 0.092 0.908 7 C 0.007 3.993 8 N -0.932 5.932 9 Si 0.882 3.118 10 H -0.283 1.283 11 H -0.290 1.290 12 H -0.278 1.278 13 C -0.055 4.055 14 C -0.109 4.109 15 C -0.108 4.108 16 C -0.125 4.125 17 C -0.033 4.033 18 Cl -0.082 7.082 19 C -0.107 4.107 20 H 0.064 0.936 21 H 0.042 0.958 22 H 0.047 0.953 23 H 0.362 0.638 24 H 0.260 0.740 25 H 0.128 0.872 26 H 0.128 0.872 27 H 0.127 0.873 28 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.160 -3.562 -16.889 17.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.102 3.898 3 H 0.085 0.915 4 N -0.389 5.389 5 C -0.375 4.375 6 H 0.110 0.890 7 C -0.189 4.189 8 N -0.579 5.579 9 Si 0.712 3.288 10 H -0.209 1.209 11 H -0.216 1.216 12 H -0.204 1.204 13 C -0.056 4.056 14 C -0.127 4.127 15 C -0.126 4.126 16 C -0.143 4.143 17 C -0.059 4.059 18 Cl -0.054 7.054 19 C -0.126 4.126 20 H 0.083 0.917 21 H 0.061 0.939 22 H 0.066 0.934 23 H 0.196 0.804 24 H 0.070 0.930 25 H 0.145 0.855 26 H 0.146 0.854 27 H 0.145 0.855 28 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -1.100 -3.292 -16.799 17.154 hybrid contribution 0.427 -1.276 -0.021 1.345 sum -0.673 -4.568 -16.820 17.442 Atomic orbital electron populations 1.22393 0.97495 1.01276 1.00851 1.19200 0.92430 0.95306 0.82839 0.91470 1.42864 1.79917 1.09372 1.06759 1.19064 1.37356 0.95661 0.85409 0.88980 1.24652 1.01284 0.97468 0.95499 1.69691 1.52474 1.35607 1.00135 0.86598 0.78570 0.86773 0.76857 1.20948 1.21608 1.20411 1.20450 0.95783 0.93871 0.95525 1.21171 0.99030 0.94457 0.98064 1.21076 0.98763 0.99910 0.92836 1.20932 1.02028 0.91768 0.99613 1.20867 1.03371 0.92089 0.89595 1.98348 1.89005 1.74580 1.43428 1.20937 0.99501 1.00558 0.91611 0.91728 0.93889 0.93363 0.80425 0.92971 0.85452 0.85394 0.85458 0.84937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.74 9.47 37.16 0.35 -2.39 15 2 C 0.21 4.00 3.09 -69.08 -0.21 3.79 15 3 H 0.07 1.30 7.94 -51.93 -0.41 0.88 15 4 N -0.75 -17.27 4.87 -54.55 -0.27 -17.54 15 5 C -0.25 -6.78 10.41 -15.06 -0.16 -6.94 15 6 H 0.09 2.71 8.06 -52.49 -0.42 2.29 15 7 C 0.01 0.20 5.50 -17.43 -0.10 0.11 15 8 N -0.93 -28.94 13.97 55.49 0.78 -28.17 15 9 Si 0.88 21.82 27.74 -169.99 -4.72 17.10 15 10 H -0.28 -7.00 7.11 56.52 0.40 -6.60 15 11 H -0.29 -7.26 7.11 56.52 0.40 -6.86 15 12 H -0.28 -6.38 6.51 56.52 0.37 -6.02 15 13 C -0.06 -0.91 4.96 -104.63 -0.52 -1.42 15 14 C -0.11 -1.69 9.06 -39.58 -0.36 -2.04 15 15 C -0.11 -1.40 10.05 -39.59 -0.40 -1.79 15 16 C -0.12 -1.57 9.83 -39.55 -0.39 -1.96 15 17 C -0.03 -0.45 6.32 -39.50 -0.25 -0.70 15 18 Cl -0.08 -1.01 28.96 -51.86 -1.50 -2.51 15 19 C -0.11 -1.58 9.45 -39.55 -0.37 -1.96 15 20 H 0.06 1.20 8.14 -51.93 -0.42 0.77 15 21 H 0.04 0.62 8.14 -51.93 -0.42 0.20 15 22 H 0.05 0.81 8.14 -51.93 -0.42 0.38 15 23 H 0.36 8.20 3.91 -40.82 -0.16 8.04 15 24 H 0.26 7.70 8.31 -40.82 -0.34 7.36 15 25 H 0.13 2.02 6.90 -52.48 -0.36 1.66 15 26 H 0.13 1.32 8.06 -52.49 -0.42 0.90 15 27 H 0.13 1.31 8.06 -52.48 -0.42 0.89 15 28 H 0.13 1.80 8.04 -52.49 -0.42 1.38 15 LS Contribution 258.10 15.07 3.89 3.89 Total: -1.00 -29.96 258.10 -7.28 -37.24 By element: Atomic # 1 Polarization: 8.35 SS G_CDS: -3.06 Total: 5.29 kcal Atomic # 6 Polarization: -12.91 SS G_CDS: -2.40 Total: -15.31 kcal Atomic # 7 Polarization: -46.21 SS G_CDS: 0.51 Total: -45.70 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -4.72 Total: 17.10 kcal Atomic # 17 Polarization: -1.01 SS G_CDS: -1.50 Total: -2.51 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -29.96 -7.28 -37.24 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037980631.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.193 kcal (2) G-P(sol) polarization free energy of solvation -29.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.240 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds