Wall clock time and date at job start Mon Mar 30 2020 02:42:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08994 * 109.47567 * 2 1 4 4 N 1.46505 * 109.46692 * 119.99923 * 2 1 3 5 5 C 1.36931 * 119.99788 * 274.99780 * 4 2 1 6 6 H 1.08002 * 120.00438 * 0.02562 * 5 4 2 7 7 C 1.38817 * 119.99680 * 179.72358 * 5 4 2 8 8 N 1.31617 * 119.99873 * 180.27450 * 7 5 4 9 9 Si 1.86800 * 120.00209 * 0.27770 * 7 5 4 10 10 H 1.48498 * 109.47118 * 89.99559 * 9 7 5 11 11 H 1.48499 * 109.47134 * 210.00079 * 9 7 5 12 12 H 1.48507 * 109.46904 * 329.99901 * 9 7 5 13 13 C 1.50696 * 109.47149 * 239.99505 * 2 1 3 14 14 C 1.38270 * 119.99694 * 279.72998 * 13 2 1 15 15 C 1.38215 * 120.02756 * 179.76778 * 14 13 2 16 16 C 1.38239 * 120.01110 * 0.50877 * 15 14 13 17 17 C 1.38327 * 119.98645 * 359.74197 * 16 15 14 18 18 Cl 1.73608 * 120.00979 * 180.02562 * 17 16 15 19 19 C 1.38192 * 119.99284 * 100.00200 * 13 2 1 20 20 H 1.08991 * 109.47054 * 300.00703 * 1 2 3 21 21 H 1.09004 * 109.46242 * 60.00005 * 1 2 3 22 22 H 1.08994 * 109.47567 * 179.97438 * 1 2 3 23 23 H 0.97000 * 119.99792 * 94.99575 * 4 2 1 24 24 H 0.97000 * 120.00553 * 180.02562 * 8 7 5 25 25 H 1.08006 * 119.98177 * 0.02562 * 14 13 2 26 26 H 1.08002 * 119.99103 * 180.25437 * 15 14 13 27 27 H 1.08005 * 120.00134 * 179.72595 * 16 15 14 28 28 H 1.08002 * 120.00723 * 0.02562 * 19 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 7 2.0183 -0.6906 1.1963 5 6 2.1491 -0.0075 2.3757 6 1 1.8919 1.0404 2.4243 7 6 2.6062 -0.6633 3.5106 8 7 2.7268 -0.0080 4.6457 9 14 3.0504 -2.4758 3.4268 10 1 4.4848 -2.6179 3.0695 11 1 2.8044 -3.1073 4.7481 12 1 2.2151 -3.1430 2.3961 13 6 2.0324 -0.7105 -1.2304 14 6 2.0720 -2.0922 -1.2630 15 6 2.5281 -2.7446 -2.3929 16 6 2.9548 -2.0157 -3.4872 17 6 2.9203 -0.6333 -3.4533 18 17 3.4555 0.2826 -4.8275 19 6 2.4586 0.0192 -2.3238 20 1 -0.3633 0.5139 0.8898 21 1 -0.3632 0.5139 -0.8901 22 1 -0.3634 -1.0276 -0.0005 23 1 2.2489 -1.6318 1.1527 24 1 3.0466 -0.4660 5.4386 25 1 1.7425 -2.6620 -0.4066 26 1 2.5549 -3.8240 -2.4192 27 1 3.3154 -2.5256 -4.3684 28 1 2.4322 1.0985 -2.2965 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037980631.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:38 Heat of formation + Delta-G solvation = 7.422685 kcal Electronic energy + Delta-G solvation = -12965.236738 eV Core-core repulsion = 10620.343857 eV Total energy + Delta-G solvation = -2344.892881 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.062 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.55261 -37.76955 -36.92038 -34.25921 -32.11236 -31.47526 -29.93986 -25.91658 -24.20750 -23.50620 -21.40046 -19.98113 -17.89427 -16.93976 -16.46724 -16.10647 -15.70250 -14.99756 -14.77130 -14.51722 -14.27535 -14.00986 -13.61807 -13.04750 -12.84961 -12.67570 -12.37927 -12.27114 -12.17810 -11.98779 -11.78842 -11.52736 -11.06053 -9.86663 -9.63686 -9.35313 -8.02677 -5.36736 0.19661 0.32019 1.14073 1.35688 1.40445 1.46964 2.47804 2.66722 3.28899 3.56759 3.74976 3.92347 4.14222 4.31231 4.38877 4.48076 4.66931 4.76126 4.90711 4.98898 5.11023 5.24019 5.34898 5.46224 5.60554 5.76899 5.85627 6.21139 7.06293 7.80683 8.00817 9.18715 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.038605 B = 0.007057 C = 0.006653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 725.121050 B = 3966.981100 C = 4207.668708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.206 3.794 3 H 0.055 0.945 4 N -0.748 5.748 5 C -0.230 4.230 6 H 0.059 0.941 7 C -0.063 4.063 8 N -0.983 5.983 9 Si 0.949 3.051 10 H -0.279 1.279 11 H -0.295 1.295 12 H -0.248 1.248 13 C -0.073 4.073 14 C -0.123 4.123 15 C -0.100 4.100 16 C -0.116 4.116 17 C -0.038 4.038 18 Cl -0.070 7.070 19 C -0.114 4.114 20 H 0.041 0.959 21 H 0.070 0.930 22 H 0.052 0.948 23 H 0.366 0.634 24 H 0.258 0.742 25 H 0.121 0.879 26 H 0.160 0.840 27 H 0.156 0.844 28 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.945 -5.596 -19.478 20.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.099 3.901 3 H 0.073 0.927 4 N -0.393 5.393 5 C -0.361 4.361 6 H 0.077 0.923 7 C -0.254 4.254 8 N -0.634 5.634 9 Si 0.776 3.224 10 H -0.206 1.206 11 H -0.222 1.222 12 H -0.173 1.173 13 C -0.074 4.074 14 C -0.142 4.142 15 C -0.117 4.117 16 C -0.135 4.135 17 C -0.065 4.065 18 Cl -0.041 7.041 19 C -0.133 4.133 20 H 0.060 0.940 21 H 0.089 0.911 22 H 0.072 0.928 23 H 0.201 0.799 24 H 0.067 0.933 25 H 0.139 0.861 26 H 0.178 0.822 27 H 0.174 0.826 28 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -0.908 -5.326 -19.459 20.195 hybrid contribution 0.347 -0.538 0.642 0.907 sum -0.561 -5.865 -18.817 19.717 Atomic orbital electron populations 1.22242 0.96007 1.01668 1.01103 1.19315 0.93403 0.94722 0.82700 0.92726 1.42846 1.80174 1.09588 1.06663 1.19026 1.35376 0.94537 0.87159 0.92284 1.25467 1.02307 1.02537 0.95096 1.69874 1.54700 1.37760 1.01043 0.85495 0.78651 0.80951 0.77256 1.20574 1.22175 1.17277 1.20135 0.97871 0.94468 0.94887 1.21238 0.99939 0.93960 0.99036 1.21390 0.97170 1.01514 0.91672 1.21310 1.00476 0.91321 1.00371 1.20985 1.03061 0.92836 0.89616 1.98356 1.88788 1.74452 1.42498 1.20973 0.99661 1.00871 0.91800 0.93963 0.91099 0.92846 0.79898 0.93335 0.86081 0.82236 0.82614 0.84572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.07 9.47 71.98 0.68 -4.38 15 2 C 0.21 7.75 3.09 44.24 0.14 7.89 15 3 H 0.05 2.16 7.94 -2.39 -0.02 2.14 15 4 N -0.75 -34.49 4.87 -326.49 -1.59 -36.09 15 5 C -0.23 -13.03 10.41 84.04 0.87 -12.15 15 6 H 0.06 3.65 8.06 -2.91 -0.02 3.63 15 7 C -0.06 -3.68 5.50 84.86 0.47 -3.21 15 8 N -0.98 -63.01 13.97 21.65 0.30 -62.70 15 9 Si 0.95 45.00 27.74 68.60 1.90 46.91 15 10 H -0.28 -13.02 7.11 99.48 0.71 -12.31 15 11 H -0.30 -14.17 7.11 99.48 0.71 -13.46 15 12 H -0.25 -10.42 6.51 99.48 0.65 -9.77 15 13 C -0.07 -2.28 4.96 -19.87 -0.10 -2.37 15 14 C -0.12 -3.50 9.06 22.27 0.20 -3.30 15 15 C -0.10 -2.19 10.05 22.26 0.22 -1.96 15 16 C -0.12 -2.46 9.83 22.29 0.22 -2.24 15 17 C -0.04 -0.94 6.32 22.32 0.14 -0.80 15 18 Cl -0.07 -1.52 28.96 -2.72 -0.08 -1.60 15 19 C -0.11 -3.17 9.45 22.29 0.21 -2.96 15 20 H 0.04 1.58 8.14 -2.39 -0.02 1.56 15 21 H 0.07 1.97 8.14 -2.39 -0.02 1.95 15 22 H 0.05 1.72 8.14 -2.39 -0.02 1.70 15 23 H 0.37 16.09 3.91 -92.71 -0.36 15.72 15 24 H 0.26 15.74 8.31 -92.71 -0.77 14.97 15 25 H 0.12 3.55 6.90 -2.91 -0.02 3.53 15 26 H 0.16 2.48 8.06 -2.91 -0.02 2.45 15 27 H 0.16 2.41 8.06 -2.91 -0.02 2.39 15 28 H 0.14 3.56 8.04 -2.91 -0.02 3.53 15 Total: -1.00 -65.27 258.10 4.33 -60.94 By element: Atomic # 1 Polarization: 17.29 SS G_CDS: 0.74 Total: 18.03 kcal Atomic # 6 Polarization: -28.55 SS G_CDS: 3.06 Total: -25.49 kcal Atomic # 7 Polarization: -97.50 SS G_CDS: -1.29 Total: -98.79 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 1.90 Total: 46.91 kcal Atomic # 17 Polarization: -1.52 SS G_CDS: -0.08 Total: -1.60 kcal Total: -65.27 4.33 -60.94 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037980631.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.365 kcal (2) G-P(sol) polarization free energy of solvation -65.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.943 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds