Wall clock time and date at job start Mon Mar 30 2020 02:45:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46506 * 120.00098 * 2 1 4 4 C 1.50699 * 109.46928 * 269.99904 * 3 2 1 5 5 H 1.08003 * 119.99963 * 0.02562 * 4 3 2 6 6 C 1.37873 * 119.99865 * 179.97438 * 4 3 2 7 7 N 1.31514 * 120.00518 * 0.02562 * 6 4 3 8 8 Si 1.86803 * 119.99987 * 179.97438 * 6 4 3 9 9 H 1.48501 * 109.46948 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.47174 * 120.00320 * 8 6 4 11 11 H 1.48497 * 109.47378 * 240.00235 * 8 6 4 12 12 C 1.39741 * 120.00220 * 179.97438 * 2 1 3 13 13 C 1.38895 * 120.06363 * 179.72878 * 12 2 1 14 14 C 1.38113 * 119.93995 * 179.72414 * 13 12 2 15 15 C 1.38386 * 120.05465 * 0.55218 * 14 13 12 16 16 Cl 1.73600 * 119.93128 * 179.70363 * 15 14 13 17 17 C 1.38381 * 120.12810 * 359.72105 * 15 14 13 18 18 C 1.38105 * 120.05658 * 0.02562 * 17 15 14 19 19 H 1.08999 * 109.46532 * 90.00087 * 1 2 3 20 20 H 1.09000 * 109.46877 * 210.00112 * 1 2 3 21 21 H 1.09000 * 109.47251 * 330.00217 * 1 2 3 22 22 H 1.09004 * 109.47073 * 29.99732 * 3 2 1 23 23 H 1.09000 * 109.47212 * 149.99814 * 3 2 1 24 24 H 0.96992 * 120.00316 * 179.97438 * 7 6 4 25 25 H 1.08007 * 120.02877 * 359.97170 * 13 12 2 26 26 H 1.07993 * 119.96970 * 180.24927 * 14 13 12 27 27 H 1.07991 * 119.96986 * 179.97438 * 17 15 14 28 28 H 1.08007 * 120.02412 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2688 0.0000 4 6 2.4487 1.7037 -1.4208 5 1 2.0974 1.0961 -2.2417 6 6 3.1260 2.8779 -1.6728 7 7 3.5534 3.6181 -0.6732 8 14 3.4380 3.4167 -3.4340 9 1 2.8609 2.4162 -4.3673 10 1 2.8000 4.7371 -3.6680 11 1 4.9006 3.5256 -3.6667 12 6 2.1638 -1.2102 0.0005 13 6 3.5527 -1.2117 -0.0051 14 6 4.2408 -2.4092 0.0012 15 6 3.5475 -3.6069 0.0016 16 17 4.4156 -5.1102 0.0018 17 6 2.1637 -3.6084 0.0016 18 6 1.4706 -2.4138 0.0005 19 1 -0.3632 0.0000 -1.0277 20 1 -0.3633 -0.8900 0.5139 21 1 -0.3634 0.8900 0.5138 22 1 1.6084 2.0285 0.5138 23 1 3.1500 1.1384 0.5139 24 1 4.0302 4.4439 -0.8505 25 1 4.0942 -0.2772 -0.0105 26 1 5.3207 -2.4109 0.0008 27 1 1.6252 -4.5445 0.0015 28 1 0.3906 -2.4156 0.0001 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000039207901.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:24 Heat of formation + Delta-G solvation = 19.287921 kcal Electronic energy + Delta-G solvation = -12960.210088 eV Core-core repulsion = 10615.831722 eV Total energy + Delta-G solvation = -2344.378366 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.062 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -39.02204 -36.36806 -35.18454 -32.74529 -30.67259 -29.13711 -27.89633 -25.03888 -22.95470 -21.75259 -20.04956 -17.12444 -16.58234 -15.32270 -15.29188 -14.41276 -14.10225 -13.82907 -13.13370 -13.06865 -12.77251 -12.20662 -11.65188 -11.49023 -11.34960 -11.19263 -11.03015 -10.81907 -10.69655 -10.28425 -9.96368 -9.78484 -8.85511 -8.57507 -8.51652 -6.59400 -6.09997 -4.23814 1.86978 1.97532 2.69868 3.22227 3.30725 3.35411 4.00993 4.30677 4.36987 5.15740 5.27662 5.35895 5.64669 5.81795 5.96682 6.04092 6.10621 6.23598 6.41975 6.62623 6.80950 6.84715 7.05168 7.21852 7.29491 7.74552 8.06502 8.13169 8.31027 8.84897 9.43551 10.89706 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.033104 B = 0.007039 C = 0.006289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 845.614964 B = 3976.810767 C = 4450.965722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -0.611 5.611 3 C 0.247 3.753 4 C -0.533 4.533 5 H 0.060 0.940 6 C 0.062 3.938 7 N -0.894 5.894 8 Si 0.897 3.103 9 H -0.272 1.272 10 H -0.283 1.283 11 H -0.282 1.282 12 C 0.244 3.756 13 C -0.177 4.177 14 C -0.063 4.063 15 C -0.115 4.115 16 Cl -0.104 7.104 17 C -0.064 4.064 18 C -0.212 4.212 19 H 0.044 0.956 20 H 0.055 0.945 21 H 0.063 0.937 22 H 0.033 0.967 23 H 0.037 0.963 24 H 0.264 0.736 25 H 0.141 0.859 26 H 0.123 0.877 27 H 0.120 0.880 28 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.517 -10.585 2.085 11.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.315 5.315 3 C 0.127 3.873 4 C -0.572 4.572 5 H 0.079 0.921 6 C -0.140 4.140 7 N -0.533 5.533 8 Si 0.724 3.276 9 H -0.197 1.197 10 H -0.209 1.209 11 H -0.208 1.208 12 C 0.135 3.865 13 C -0.200 4.200 14 C -0.083 4.083 15 C -0.143 4.143 16 Cl -0.076 7.076 17 C -0.083 4.083 18 C -0.235 4.235 19 H 0.062 0.938 20 H 0.073 0.927 21 H 0.082 0.918 22 H 0.051 0.949 23 H 0.055 0.945 24 H 0.074 0.926 25 H 0.159 0.841 26 H 0.141 0.859 27 H 0.138 0.862 28 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -2.484 -10.290 2.132 10.798 hybrid contribution 0.264 0.348 -1.040 1.128 sum -2.220 -9.942 1.091 10.245 Atomic orbital electron populations 1.21515 0.81167 1.01245 1.00703 1.47187 1.04618 1.04568 1.75135 1.19370 0.92156 0.78559 0.97216 1.21592 1.36532 1.06531 0.92564 0.92134 1.24960 0.95326 0.96234 0.97497 1.69930 1.38245 1.14359 1.30759 0.86457 0.78096 0.78490 0.84541 1.19695 1.20915 1.20779 1.18015 0.91530 0.86196 0.90718 1.20878 0.92671 0.98428 1.07985 1.20721 0.99517 0.90329 0.97711 1.20412 0.91997 0.85738 1.16192 1.98290 1.77440 1.34144 1.97744 1.20556 0.91771 0.97725 0.98247 1.20528 0.99388 0.90688 1.12932 0.93795 0.92658 0.91784 0.94944 0.94518 0.92612 0.84103 0.85905 0.86196 0.85917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.62 10.23 59.85 0.61 2.23 15 2 N -0.61 -12.53 2.99 -180.98 -0.54 -13.07 15 3 C 0.25 5.97 4.95 -5.19 -0.03 5.95 15 4 C -0.53 -14.22 9.39 -34.44 -0.32 -14.54 15 5 H 0.06 1.66 7.81 -52.48 -0.41 1.25 15 6 C 0.06 1.68 5.46 -17.82 -0.10 1.59 15 7 N -0.89 -25.12 13.29 55.43 0.74 -24.38 15 8 Si 0.90 20.97 29.54 -169.99 -5.02 15.95 15 9 H -0.27 -6.36 7.11 56.52 0.40 -5.96 15 10 H -0.28 -6.55 7.11 56.52 0.40 -6.15 15 11 H -0.28 -6.55 7.11 56.52 0.40 -6.15 15 12 C 0.24 4.74 6.55 -83.77 -0.55 4.19 15 13 C -0.18 -3.46 9.20 -39.38 -0.36 -3.82 15 14 C -0.06 -1.09 9.82 -39.57 -0.39 -1.48 15 15 C -0.11 -1.87 6.32 -39.47 -0.25 -2.12 15 16 Cl -0.10 -1.51 28.95 -51.86 -1.50 -3.01 15 17 C -0.06 -0.99 9.82 -39.58 -0.39 -1.38 15 18 C -0.21 -3.53 9.21 -39.39 -0.36 -3.89 15 19 H 0.04 0.73 8.14 -51.93 -0.42 0.30 15 20 H 0.05 0.76 6.20 -51.93 -0.32 0.44 15 21 H 0.06 1.02 7.89 -51.93 -0.41 0.61 15 22 H 0.03 0.82 7.89 -51.93 -0.41 0.41 15 23 H 0.04 0.94 6.21 -51.93 -0.32 0.61 15 24 H 0.26 7.03 8.31 -40.82 -0.34 6.69 15 25 H 0.14 3.00 6.15 -52.48 -0.32 2.67 15 26 H 0.12 1.89 8.06 -52.49 -0.42 1.47 15 27 H 0.12 1.57 8.06 -52.49 -0.42 1.15 15 28 H 0.12 1.78 6.14 -52.48 -0.32 1.46 15 LS Contribution 257.90 15.07 3.89 3.89 Total: -1.00 -27.58 257.90 -7.50 -35.08 By element: Atomic # 1 Polarization: 1.73 SS G_CDS: -2.92 Total: -1.19 kcal Atomic # 6 Polarization: -11.13 SS G_CDS: -2.13 Total: -13.27 kcal Atomic # 7 Polarization: -37.65 SS G_CDS: 0.19 Total: -37.45 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Atomic # 17 Polarization: -1.51 SS G_CDS: -1.50 Total: -3.01 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -27.58 -7.50 -35.08 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000039207901.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.365 kcal (2) G-P(sol) polarization free energy of solvation -27.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.077 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds