Wall clock time and date at job start Mon Mar 30 2020 02:45:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46506 * 120.00098 * 2 1 4 4 C 1.50699 * 109.46928 * 269.99904 * 3 2 1 5 5 H 1.08003 * 119.99963 * 0.02562 * 4 3 2 6 6 C 1.37873 * 119.99865 * 179.97438 * 4 3 2 7 7 N 1.31514 * 120.00518 * 0.02562 * 6 4 3 8 8 Si 1.86803 * 119.99987 * 179.97438 * 6 4 3 9 9 H 1.48501 * 109.46948 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.47174 * 120.00320 * 8 6 4 11 11 H 1.48497 * 109.47378 * 240.00235 * 8 6 4 12 12 C 1.39741 * 120.00220 * 179.97438 * 2 1 3 13 13 C 1.38895 * 120.06363 * 179.72878 * 12 2 1 14 14 C 1.38113 * 119.93995 * 179.72414 * 13 12 2 15 15 C 1.38386 * 120.05465 * 0.55218 * 14 13 12 16 16 Cl 1.73600 * 119.93128 * 179.70363 * 15 14 13 17 17 C 1.38381 * 120.12810 * 359.72105 * 15 14 13 18 18 C 1.38105 * 120.05658 * 0.02562 * 17 15 14 19 19 H 1.08999 * 109.46532 * 90.00087 * 1 2 3 20 20 H 1.09000 * 109.46877 * 210.00112 * 1 2 3 21 21 H 1.09000 * 109.47251 * 330.00217 * 1 2 3 22 22 H 1.09004 * 109.47073 * 29.99732 * 3 2 1 23 23 H 1.09000 * 109.47212 * 149.99814 * 3 2 1 24 24 H 0.96992 * 120.00316 * 179.97438 * 7 6 4 25 25 H 1.08007 * 120.02877 * 359.97170 * 13 12 2 26 26 H 1.07993 * 119.96970 * 180.24927 * 14 13 12 27 27 H 1.07991 * 119.96986 * 179.97438 * 17 15 14 28 28 H 1.08007 * 120.02412 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2688 0.0000 4 6 2.4487 1.7037 -1.4208 5 1 2.0974 1.0961 -2.2417 6 6 3.1260 2.8779 -1.6728 7 7 3.5534 3.6181 -0.6732 8 14 3.4380 3.4167 -3.4340 9 1 2.8609 2.4162 -4.3673 10 1 2.8000 4.7371 -3.6680 11 1 4.9006 3.5256 -3.6667 12 6 2.1638 -1.2102 0.0005 13 6 3.5527 -1.2117 -0.0051 14 6 4.2408 -2.4092 0.0012 15 6 3.5475 -3.6069 0.0016 16 17 4.4156 -5.1102 0.0018 17 6 2.1637 -3.6084 0.0016 18 6 1.4706 -2.4138 0.0005 19 1 -0.3632 0.0000 -1.0277 20 1 -0.3633 -0.8900 0.5139 21 1 -0.3634 0.8900 0.5138 22 1 1.6084 2.0285 0.5138 23 1 3.1500 1.1384 0.5139 24 1 4.0302 4.4439 -0.8505 25 1 4.0942 -0.2772 -0.0105 26 1 5.3207 -2.4109 0.0008 27 1 1.6252 -4.5445 0.0015 28 1 0.3906 -2.4156 0.0001 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000039207901.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:23 Heat of formation + Delta-G solvation = 5.042506 kcal Electronic energy + Delta-G solvation = -12960.827815 eV Core-core repulsion = 10615.831722 eV Total energy + Delta-G solvation = -2344.996093 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.062 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.42990 -37.72725 -36.61206 -34.72480 -32.06976 -30.62306 -29.59026 -26.68210 -24.66078 -23.16821 -21.53917 -18.66412 -18.51041 -16.98571 -16.68631 -16.15831 -15.45773 -15.37825 -14.68734 -14.45733 -14.19827 -13.91422 -13.23107 -13.07154 -12.90891 -12.67501 -12.59574 -12.43910 -12.29735 -11.96241 -11.67581 -11.40702 -10.64436 -10.35995 -9.87602 -8.38301 -7.88259 -6.37605 0.51332 0.60084 1.36721 1.39151 1.41832 1.50619 2.33631 2.56627 2.93008 3.06464 3.96599 4.08741 4.34502 4.49844 4.59301 4.70190 4.76735 4.92201 4.99399 5.13897 5.16949 5.35733 5.47170 5.52130 5.66915 5.88990 6.05998 6.42796 6.79143 6.83177 7.34259 8.82898 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.033104 B = 0.007039 C = 0.006289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 845.614964 B = 3976.810767 C = 4450.965722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.625 5.625 3 C 0.262 3.738 4 C -0.542 4.542 5 H 0.050 0.950 6 C 0.015 3.985 7 N -0.925 5.925 8 Si 0.960 3.040 9 H -0.271 1.271 10 H -0.275 1.275 11 H -0.278 1.278 12 C 0.219 3.781 13 C -0.202 4.202 14 C -0.065 4.065 15 C -0.115 4.115 16 Cl -0.083 7.083 17 C -0.057 4.057 18 C -0.202 4.202 19 H 0.043 0.957 20 H 0.088 0.912 21 H 0.064 0.936 22 H 0.014 0.986 23 H 0.015 0.985 24 H 0.267 0.733 25 H 0.110 0.890 26 H 0.135 0.865 27 H 0.154 0.846 28 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.250 -12.466 1.436 12.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.331 5.331 3 C 0.141 3.859 4 C -0.581 4.581 5 H 0.068 0.932 6 C -0.185 4.185 7 N -0.565 5.565 8 Si 0.785 3.215 9 H -0.195 1.195 10 H -0.201 1.201 11 H -0.204 1.204 12 C 0.113 3.887 13 C -0.225 4.225 14 C -0.084 4.084 15 C -0.143 4.143 16 Cl -0.055 7.055 17 C -0.076 4.076 18 C -0.225 4.225 19 H 0.061 0.939 20 H 0.107 0.893 21 H 0.083 0.917 22 H 0.032 0.968 23 H 0.033 0.967 24 H 0.076 0.924 25 H 0.128 0.872 26 H 0.153 0.847 27 H 0.171 0.829 28 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -3.225 -12.210 1.487 12.716 hybrid contribution 0.530 0.787 -0.798 1.240 sum -2.695 -11.423 0.688 11.757 Atomic orbital electron populations 1.21680 0.78944 1.02954 1.01153 1.47050 1.05920 1.03598 1.76560 1.18880 0.91351 0.80136 0.95546 1.21796 1.36386 1.06522 0.93365 0.93200 1.25739 0.95103 0.96342 1.01312 1.70027 1.38966 1.14821 1.32688 0.85476 0.78006 0.78164 0.79846 1.19535 1.20079 1.20353 1.18292 0.91618 0.86794 0.92024 1.20758 0.93253 0.98173 1.10342 1.20827 1.00230 0.90091 0.97281 1.20573 0.92685 0.86205 1.14873 1.98302 1.77107 1.32473 1.97604 1.20937 0.91554 0.98664 0.96439 1.20797 1.00679 0.89684 1.11318 0.93867 0.89339 0.91742 0.96782 0.96728 0.92369 0.87185 0.84731 0.82859 0.83324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.06 10.23 127.77 1.31 4.37 15 2 N -0.63 -25.87 2.99 -726.50 -2.17 -28.04 15 3 C 0.26 13.25 4.95 85.63 0.42 13.67 15 4 C -0.54 -29.65 9.39 25.60 0.24 -29.41 15 5 H 0.05 2.78 7.81 -2.91 -0.02 2.75 15 6 C 0.01 0.80 5.46 84.65 0.46 1.26 15 7 N -0.93 -53.20 13.29 21.45 0.28 -52.91 15 8 Si 0.96 43.39 29.54 68.60 2.03 45.42 15 9 H -0.27 -12.06 7.11 99.48 0.71 -11.36 15 10 H -0.28 -12.03 7.11 99.48 0.71 -11.33 15 11 H -0.28 -12.31 7.11 99.48 0.71 -11.60 15 12 C 0.22 8.44 6.55 38.19 0.25 8.69 15 13 C -0.20 -8.09 9.20 22.40 0.21 -7.88 15 14 C -0.06 -2.19 9.82 22.28 0.22 -1.98 15 15 C -0.11 -3.45 6.32 22.34 0.14 -3.31 15 16 Cl -0.08 -2.17 28.95 -2.72 -0.08 -2.24 15 17 C -0.06 -1.57 9.82 22.27 0.22 -1.36 15 18 C -0.20 -6.19 9.21 22.40 0.21 -5.98 15 19 H 0.04 1.38 8.14 -2.39 -0.02 1.36 15 20 H 0.09 2.21 6.20 -2.39 -0.01 2.19 15 21 H 0.06 2.02 7.89 -2.39 -0.02 2.01 15 22 H 0.01 0.75 7.89 -2.38 -0.02 0.73 15 23 H 0.01 0.80 6.21 -2.39 -0.01 0.78 15 24 H 0.27 14.46 8.31 -92.71 -0.77 13.69 15 25 H 0.11 5.02 6.15 -2.91 -0.02 5.00 15 26 H 0.13 4.08 8.06 -2.91 -0.02 4.06 15 27 H 0.15 3.26 8.06 -2.92 -0.02 3.23 15 28 H 0.15 3.73 6.14 -2.91 -0.02 3.71 15 Total: -1.00 -59.38 257.90 4.89 -54.49 By element: Atomic # 1 Polarization: 4.07 SS G_CDS: 1.16 Total: 5.23 kcal Atomic # 6 Polarization: -25.60 SS G_CDS: 3.68 Total: -21.93 kcal Atomic # 7 Polarization: -79.07 SS G_CDS: -1.89 Total: -80.96 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 2.03 Total: 45.42 kcal Atomic # 17 Polarization: -2.17 SS G_CDS: -0.08 Total: -2.24 kcal Total: -59.38 4.89 -54.49 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000039207901.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.529 kcal (2) G-P(sol) polarization free energy of solvation -59.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.486 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds