Wall clock time and date at job start Mon Mar 30 2020 02:45:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46499 * 120.00381 * 2 1 4 4 C 1.50701 * 109.46992 * 269.99655 * 3 2 1 5 5 H 1.07998 * 120.00129 * 0.02562 * 4 3 2 6 6 C 1.37880 * 119.99861 * 179.97438 * 4 3 2 7 7 N 1.31510 * 119.99913 * 0.02562 * 6 4 3 8 8 Si 1.86797 * 119.99734 * 180.02562 * 6 4 3 9 9 H 1.48502 * 109.47432 * 0.02562 * 8 6 4 10 10 H 1.48506 * 109.46890 * 120.00210 * 8 6 4 11 11 H 1.48501 * 109.47062 * 240.00257 * 8 6 4 12 12 C 1.39677 * 119.99606 * 179.97438 * 2 1 3 13 13 C 1.38942 * 120.06373 * 179.72966 * 12 2 1 14 14 C 1.38098 * 119.94767 * 179.71878 * 13 12 2 15 15 C 1.38286 * 120.08588 * 0.55700 * 14 13 12 16 16 C 1.38379 * 120.13652 * 359.71604 * 15 14 13 17 17 Cl 1.73606 * 119.97522 * 180.02562 * 16 15 14 18 18 C 1.38240 * 120.04901 * 0.02562 * 16 15 14 19 19 H 1.09000 * 109.46899 * 89.99956 * 1 2 3 20 20 H 1.08992 * 109.47334 * 209.99920 * 1 2 3 21 21 H 1.08994 * 109.46680 * 330.00544 * 1 2 3 22 22 H 1.09002 * 109.47391 * 149.99645 * 3 2 1 23 23 H 1.09001 * 109.46813 * 29.99701 * 3 2 1 24 24 H 0.97002 * 119.99768 * 179.97438 * 7 6 4 25 25 H 1.07999 * 120.02928 * 359.97438 * 13 12 2 26 26 H 1.08000 * 119.95552 * 180.24991 * 14 13 12 27 27 H 1.07996 * 119.92988 * 179.74582 * 15 14 13 28 28 H 1.08006 * 120.04260 * 180.02562 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4489 1.7036 -1.4208 5 1 2.0976 1.0960 -2.2417 6 6 3.1263 2.8778 -1.6728 7 7 3.5536 3.6179 -0.6732 8 14 3.4371 3.4173 -3.4339 9 1 2.8591 2.4173 -4.3673 10 1 2.7991 4.7379 -3.6670 11 1 4.8996 3.5258 -3.6676 12 6 2.1633 -1.2097 0.0005 13 6 3.5527 -1.2113 -0.0051 14 6 4.2408 -2.4087 0.0013 15 6 3.5486 -3.6059 0.0017 16 6 2.1649 -3.6084 0.0017 17 17 1.3002 -5.1139 0.0029 18 6 1.4705 -2.4131 0.0006 19 1 -0.3633 0.0000 -1.0277 20 1 -0.3633 -0.8899 0.5138 21 1 -0.3632 0.8900 0.5137 22 1 3.1500 1.1383 0.5139 23 1 1.6085 2.0283 0.5138 24 1 4.0305 4.4438 -0.8505 25 1 4.0943 -0.2770 -0.0104 26 1 5.3207 -2.4101 0.0010 27 1 4.0892 -4.5408 0.0026 28 1 0.3904 -2.4152 0.0010 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049811407.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:26 Heat of formation + Delta-G solvation = 5.547885 kcal Electronic energy + Delta-G solvation = -12994.833953 eV Core-core repulsion = 10649.859774 eV Total energy + Delta-G solvation = -2344.974178 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.062 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.44246 -37.76290 -36.77582 -34.75218 -31.82719 -30.80529 -29.57955 -26.74512 -24.71346 -23.06168 -21.59911 -18.67750 -18.50655 -16.95616 -16.50294 -16.13592 -15.68196 -15.41787 -14.73819 -14.57574 -14.23275 -13.92877 -13.28428 -13.06678 -12.78229 -12.65608 -12.54116 -12.46148 -12.30345 -11.81039 -11.71161 -11.64475 -10.64392 -10.55890 -9.64467 -8.40470 -7.93374 -6.37214 0.39464 0.70359 1.20730 1.37132 1.39458 1.51123 2.34173 2.56941 2.92907 3.06712 4.00180 4.23875 4.37362 4.40985 4.58446 4.70082 4.77763 4.78778 4.92912 5.10696 5.16588 5.38274 5.48459 5.65214 5.67697 5.90755 6.06338 6.42661 6.77525 6.82774 7.34531 8.83227 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.039829 B = 0.006806 C = 0.006478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 702.843805 B = 4112.872293 C = 4321.265209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.626 5.626 3 C 0.264 3.736 4 C -0.542 4.542 5 H 0.049 0.951 6 C 0.015 3.985 7 N -0.925 5.925 8 Si 0.960 3.040 9 H -0.272 1.272 10 H -0.276 1.276 11 H -0.276 1.276 12 C 0.225 3.775 13 C -0.208 4.208 14 C -0.059 4.059 15 C -0.185 4.185 16 C 0.010 3.990 17 Cl -0.071 7.071 18 C -0.213 4.213 19 H 0.042 0.958 20 H 0.082 0.918 21 H 0.066 0.934 22 H 0.017 0.983 23 H 0.014 0.986 24 H 0.267 0.733 25 H 0.110 0.890 26 H 0.150 0.850 27 H 0.148 0.852 28 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.560 -12.480 1.440 12.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.333 5.333 3 C 0.143 3.857 4 C -0.581 4.581 5 H 0.067 0.933 6 C -0.184 4.184 7 N -0.564 5.564 8 Si 0.786 3.214 9 H -0.196 1.196 10 H -0.201 1.201 11 H -0.202 1.202 12 C 0.119 3.881 13 C -0.231 4.231 14 C -0.077 4.077 15 C -0.206 4.206 16 C -0.017 4.017 17 Cl -0.042 7.042 18 C -0.236 4.236 19 H 0.060 0.940 20 H 0.100 0.900 21 H 0.085 0.915 22 H 0.035 0.965 23 H 0.032 0.968 24 H 0.077 0.923 25 H 0.128 0.872 26 H 0.167 0.833 27 H 0.166 0.834 28 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -2.691 -12.231 1.491 12.612 hybrid contribution 0.111 0.741 -0.799 1.095 sum -2.581 -11.489 0.693 11.796 Atomic orbital electron populations 1.21646 0.79248 1.02745 1.01042 1.46996 1.05770 1.03593 1.76922 1.18882 0.91356 0.79885 0.95595 1.21786 1.36418 1.06567 0.93321 0.93305 1.25733 0.95085 0.96290 1.01330 1.70030 1.38932 1.14810 1.32665 0.85470 0.78057 0.78114 0.79809 1.19627 1.20139 1.20202 1.17984 0.91694 0.85986 0.92451 1.21012 0.92930 0.99401 1.09794 1.21057 1.00653 0.90444 0.95590 1.20913 0.91603 0.99243 1.08832 1.20635 0.92577 0.86063 1.02451 1.98328 1.77230 1.31737 1.96930 1.20497 1.00330 0.89392 1.13419 0.93975 0.89957 0.91515 0.96497 0.96807 0.92348 0.87226 0.83274 0.83412 0.84444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.26 10.23 127.77 1.31 4.57 15 2 N -0.63 -26.60 2.99 -726.58 -2.17 -28.77 15 3 C 0.26 13.41 4.95 85.63 0.42 13.83 15 4 C -0.54 -29.75 9.39 25.60 0.24 -29.51 15 5 H 0.05 2.74 7.81 -2.91 -0.02 2.71 15 6 C 0.02 0.83 5.46 84.66 0.46 1.29 15 7 N -0.92 -52.99 13.29 21.45 0.28 -52.70 15 8 Si 0.96 43.31 29.54 68.60 2.03 45.34 15 9 H -0.27 -12.12 7.11 99.48 0.71 -11.41 15 10 H -0.28 -12.06 7.11 99.48 0.71 -11.35 15 11 H -0.28 -12.15 7.11 99.48 0.71 -11.44 15 12 C 0.22 8.91 6.55 38.21 0.25 9.16 15 13 C -0.21 -8.20 9.20 22.41 0.21 -8.00 15 14 C -0.06 -1.83 10.04 22.25 0.22 -1.61 15 15 C -0.19 -5.27 9.83 22.31 0.22 -5.05 15 16 C 0.01 0.30 6.32 22.30 0.14 0.44 15 17 Cl -0.07 -1.80 28.95 -2.72 -0.08 -1.88 15 18 C -0.21 -7.14 8.99 22.42 0.20 -6.94 15 19 H 0.04 1.42 8.14 -2.39 -0.02 1.40 15 20 H 0.08 2.29 6.20 -2.39 -0.01 2.28 15 21 H 0.07 2.18 7.89 -2.39 -0.02 2.17 15 22 H 0.02 0.92 6.21 -2.39 -0.01 0.91 15 23 H 0.01 0.74 7.89 -2.39 -0.02 0.73 15 24 H 0.27 14.40 8.31 -92.71 -0.77 13.63 15 25 H 0.11 4.89 6.15 -2.91 -0.02 4.87 15 26 H 0.15 3.76 8.06 -2.91 -0.02 3.74 15 27 H 0.15 3.35 8.06 -2.91 -0.02 3.32 15 28 H 0.14 4.15 6.14 -2.91 -0.02 4.13 15 Total: -1.00 -59.03 257.90 4.89 -54.13 By element: Atomic # 1 Polarization: 4.53 SS G_CDS: 1.16 Total: 5.69 kcal Atomic # 6 Polarization: -25.48 SS G_CDS: 3.68 Total: -21.81 kcal Atomic # 7 Polarization: -79.59 SS G_CDS: -1.89 Total: -81.47 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 2.03 Total: 45.34 kcal Atomic # 17 Polarization: -1.80 SS G_CDS: -0.08 Total: -1.88 kcal Total: -59.03 4.89 -54.13 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049811407.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.682 kcal (2) G-P(sol) polarization free energy of solvation -59.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.134 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds