Wall clock time and date at job start Mon Mar 30 2020 02:40:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50694 * 120.00046 * 2 1 4 4 N 1.46503 * 109.47079 * 125.00109 * 3 2 1 5 5 C 1.36757 * 127.14036 * 264.68206 * 4 3 2 6 6 N 1.30299 * 107.31645 * 179.89751 * 5 4 3 7 7 N 1.28518 * 110.07883 * 0.37731 * 6 5 4 8 8 C 1.31291 * 109.85702 * 359.76256 * 7 6 5 9 9 S 1.76199 * 126.48303 * 180.02562 * 8 7 6 10 10 C 1.80998 * 100.00379 * 359.95414 * 9 8 7 11 11 C 1.50696 * 109.47152 * 179.97438 * 10 9 8 12 12 H 1.07997 * 120.00099 * 0.02562 * 11 10 9 13 13 C 1.37874 * 120.00068 * 179.97438 * 11 10 9 14 14 N 1.31517 * 120.00096 * 0.02562 * 13 11 10 15 15 Si 1.86804 * 120.00238 * 180.02562 * 13 11 10 16 16 H 1.48494 * 109.46920 * 60.00464 * 15 13 11 17 17 H 1.48502 * 109.47075 * 180.02562 * 15 13 11 18 18 H 1.48490 * 109.47122 * 300.00200 * 15 13 11 19 19 H 1.08005 * 119.99846 * 0.02562 * 1 2 3 20 20 H 1.07995 * 120.00080 * 179.72892 * 1 2 3 21 21 H 1.08000 * 119.99390 * 179.97438 * 2 1 3 22 22 H 1.08999 * 109.47261 * 245.00047 * 3 2 1 23 23 H 1.08997 * 109.47273 * 4.99972 * 3 2 1 24 24 H 1.07999 * 126.34022 * 359.97438 * 5 4 3 25 25 H 1.08999 * 109.47141 * 300.00728 * 10 9 8 26 26 H 1.09008 * 109.46700 * 60.00363 * 10 9 8 27 27 H 0.96998 * 120.00538 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9938 1.3318 1.1314 5 6 2.7790 1.8836 2.3642 6 7 3.8561 1.6865 3.0703 7 7 4.7335 1.0596 2.3712 8 6 4.2574 0.8163 1.1721 9 16 5.0911 -0.0184 -0.1367 10 6 6.6681 -0.3796 0.6750 11 6 7.5698 -1.1139 -0.2836 12 1 7.2266 -1.3397 -1.2824 13 6 8.8332 -1.4964 0.1142 14 7 9.2514 -1.2209 1.3303 15 14 9.9513 -2.4059 -1.0742 16 1 10.1925 -1.5614 -2.2716 17 1 11.2451 -2.7024 -0.4082 18 1 9.3050 -3.6773 -1.4873 19 1 -0.5400 0.9354 -0.0004 20 1 -0.5400 -0.9352 -0.0044 21 1 1.8499 -0.9354 0.0004 22 1 2.6213 1.4026 -0.9314 23 1 1.3586 2.1316 0.0896 24 1 1.8821 2.3881 2.6920 25 1 7.1426 0.5535 0.9786 26 1 6.4907 -0.9998 1.5537 27 1 10.1401 -1.4903 1.6103 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075321717.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:38 Heat of formation + Delta-G solvation = 91.656429 kcal Electronic energy + Delta-G solvation = -12654.340222 eV Core-core repulsion = 10347.436447 eV Total energy + Delta-G solvation = -2306.903774 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.063 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -42.40853 -36.16154 -33.19702 -32.67419 -30.26523 -28.54709 -26.86705 -23.36920 -22.22901 -21.77714 -20.26566 -17.78381 -16.46144 -16.00271 -15.79967 -14.97353 -14.81696 -14.52962 -13.76200 -13.04571 -12.59868 -12.38710 -12.35852 -11.70851 -11.30183 -10.89998 -10.86078 -10.53005 -10.08846 -9.97133 -9.81400 -9.67886 -9.54622 -9.22535 -8.60648 -6.89215 -6.19183 -4.27985 1.68748 1.96517 2.08773 3.05240 3.26787 3.28281 3.30878 3.31851 3.48346 4.33009 4.44948 4.58197 4.81229 5.00343 5.16786 5.23193 5.56604 5.61656 5.93260 6.28085 6.32262 6.37467 7.03667 7.12720 7.23723 7.67684 7.93363 8.72558 9.08679 9.35502 10.91099 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.041358 B = 0.006699 C = 0.005931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 676.860751 B = 4178.694800 C = 4719.639001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.173 4.173 3 C 0.138 3.862 4 N -0.473 5.473 5 C 0.137 3.863 6 N -0.292 5.292 7 N -0.293 5.293 8 C 0.180 3.820 9 S -0.058 6.058 10 C 0.080 3.920 11 C -0.528 4.528 12 H 0.067 0.933 13 C 0.071 3.929 14 N -0.881 5.881 15 Si 0.908 3.092 16 H -0.273 1.273 17 H -0.284 1.284 18 H -0.273 1.273 19 H 0.099 0.901 20 H 0.105 0.895 21 H 0.122 0.878 22 H 0.106 0.894 23 H 0.099 0.901 24 H 0.213 0.787 25 H 0.053 0.947 26 H 0.053 0.947 27 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.851 4.007 -4.114 16.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.192 4.192 3 C 0.015 3.985 4 N -0.168 5.168 5 C -0.153 4.153 6 N -0.131 5.131 7 N -0.137 5.137 8 C -0.194 4.194 9 S 0.170 5.830 10 C -0.068 4.068 11 C -0.568 4.568 12 H 0.085 0.915 13 C -0.134 4.134 14 N -0.517 5.517 15 Si 0.734 3.266 16 H -0.199 1.199 17 H -0.209 1.209 18 H -0.199 1.199 19 H 0.117 0.883 20 H 0.123 0.877 21 H 0.140 0.860 22 H 0.124 0.876 23 H 0.117 0.883 24 H 0.230 0.770 25 H 0.071 0.929 26 H 0.071 0.929 27 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -15.090 3.788 -3.884 16.036 hybrid contribution -0.036 -0.149 -0.317 0.352 sum -15.126 3.639 -4.201 16.115 Atomic orbital electron populations 1.23900 0.95384 1.02372 0.99044 1.23206 0.96279 0.98656 1.01015 1.20934 0.91691 0.97167 0.88658 1.46682 1.12581 1.44427 1.13125 1.26483 1.02062 1.04080 0.82698 1.73930 0.99016 1.14172 1.25998 1.74846 1.22499 1.16122 1.00209 1.27519 0.86736 1.03469 1.01695 1.85398 1.18785 1.65933 1.12838 1.21324 0.85918 1.01366 0.98159 1.20545 0.98702 1.38644 0.98913 0.91535 1.24941 0.97383 0.95574 0.95543 1.69975 1.19254 1.45188 1.17329 0.86402 0.79462 0.80083 0.80618 1.19861 1.20935 1.19871 0.88274 0.87689 0.86013 0.87609 0.88259 0.77013 0.92909 0.92899 0.92199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.33 14.32 29.01 0.42 -0.92 15 2 C -0.17 -1.79 9.85 -36.03 -0.35 -2.15 15 3 C 0.14 1.49 6.46 -5.20 -0.03 1.46 15 4 N -0.47 -7.36 2.79 -119.46 -0.33 -7.69 15 5 C 0.14 2.09 12.80 -88.95 -1.14 0.95 15 6 N -0.29 -5.96 12.17 29.90 0.36 -5.59 15 7 N -0.29 -6.80 11.60 30.68 0.36 -6.45 15 8 C 0.18 3.66 8.07 -88.34 -0.71 2.95 15 9 S -0.06 -1.23 21.84 -107.50 -2.35 -3.58 15 10 C 0.08 2.11 4.99 36.00 0.18 2.29 15 11 C -0.53 -14.58 9.13 -34.44 -0.31 -14.90 15 12 H 0.07 1.77 7.71 -52.49 -0.40 1.36 15 13 C 0.07 1.99 5.46 -17.82 -0.10 1.89 15 14 N -0.88 -25.94 13.29 55.43 0.74 -25.20 15 15 Si 0.91 21.00 29.54 -169.99 -5.02 15.98 15 16 H -0.27 -6.19 7.11 56.52 0.40 -5.79 15 17 H -0.28 -6.49 7.11 56.52 0.40 -6.09 15 18 H -0.27 -6.19 7.11 56.52 0.40 -5.79 15 19 H 0.10 0.59 7.84 -52.48 -0.41 0.18 15 20 H 0.10 0.74 8.06 -52.49 -0.42 0.32 15 21 H 0.12 1.49 8.06 -52.49 -0.42 1.07 15 22 H 0.11 1.14 8.02 -51.93 -0.42 0.73 15 23 H 0.10 0.73 7.79 -51.93 -0.40 0.33 15 24 H 0.21 2.05 8.06 -52.49 -0.42 1.63 15 25 H 0.05 1.51 8.14 -51.92 -0.42 1.09 15 26 H 0.05 1.51 8.14 -51.91 -0.42 1.09 15 27 H 0.27 7.41 8.31 -40.82 -0.34 7.07 15 LS Contribution 263.75 15.07 3.97 3.97 Total: -1.00 -32.57 263.75 -7.21 -39.79 By element: Atomic # 1 Polarization: 0.08 SS G_CDS: -2.89 Total: -2.80 kcal Atomic # 6 Polarization: -6.37 SS G_CDS: -2.06 Total: -8.43 kcal Atomic # 7 Polarization: -46.05 SS G_CDS: 1.12 Total: -44.93 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Atomic # 16 Polarization: -1.23 SS G_CDS: -2.35 Total: -3.58 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -32.57 -7.21 -39.79 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075321717.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.443 kcal (2) G-P(sol) polarization free energy of solvation -32.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.786 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds