Wall clock time and date at job start Mon Mar 30 2020 02:40:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50694 * 120.00046 * 2 1 4 4 N 1.46503 * 109.47079 * 125.00109 * 3 2 1 5 5 C 1.36757 * 127.14036 * 264.68206 * 4 3 2 6 6 N 1.30299 * 107.31645 * 179.89751 * 5 4 3 7 7 N 1.28518 * 110.07883 * 0.37731 * 6 5 4 8 8 C 1.31291 * 109.85702 * 359.76256 * 7 6 5 9 9 S 1.76199 * 126.48303 * 180.02562 * 8 7 6 10 10 C 1.80998 * 100.00379 * 359.95414 * 9 8 7 11 11 C 1.50696 * 109.47152 * 179.97438 * 10 9 8 12 12 H 1.07997 * 120.00099 * 0.02562 * 11 10 9 13 13 C 1.37874 * 120.00068 * 179.97438 * 11 10 9 14 14 N 1.31517 * 120.00096 * 0.02562 * 13 11 10 15 15 Si 1.86804 * 120.00238 * 180.02562 * 13 11 10 16 16 H 1.48494 * 109.46920 * 60.00464 * 15 13 11 17 17 H 1.48502 * 109.47075 * 180.02562 * 15 13 11 18 18 H 1.48490 * 109.47122 * 300.00200 * 15 13 11 19 19 H 1.08005 * 119.99846 * 0.02562 * 1 2 3 20 20 H 1.07995 * 120.00080 * 179.72892 * 1 2 3 21 21 H 1.08000 * 119.99390 * 179.97438 * 2 1 3 22 22 H 1.08999 * 109.47261 * 245.00047 * 3 2 1 23 23 H 1.08997 * 109.47273 * 4.99972 * 3 2 1 24 24 H 1.07999 * 126.34022 * 359.97438 * 5 4 3 25 25 H 1.08999 * 109.47141 * 300.00728 * 10 9 8 26 26 H 1.09008 * 109.46700 * 60.00363 * 10 9 8 27 27 H 0.96998 * 120.00538 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9938 1.3318 1.1314 5 6 2.7790 1.8836 2.3642 6 7 3.8561 1.6865 3.0703 7 7 4.7335 1.0596 2.3712 8 6 4.2574 0.8163 1.1721 9 16 5.0911 -0.0184 -0.1367 10 6 6.6681 -0.3796 0.6750 11 6 7.5698 -1.1139 -0.2836 12 1 7.2266 -1.3397 -1.2824 13 6 8.8332 -1.4964 0.1142 14 7 9.2514 -1.2209 1.3303 15 14 9.9513 -2.4059 -1.0742 16 1 10.1925 -1.5614 -2.2716 17 1 11.2451 -2.7024 -0.4082 18 1 9.3050 -3.6773 -1.4873 19 1 -0.5400 0.9354 -0.0004 20 1 -0.5400 -0.9352 -0.0044 21 1 1.8499 -0.9354 0.0004 22 1 2.6213 1.4026 -0.9314 23 1 1.3586 2.1316 0.0896 24 1 1.8821 2.3881 2.6920 25 1 7.1426 0.5535 0.9786 26 1 6.4907 -0.9998 1.5537 27 1 10.1401 -1.4903 1.6103 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075321717.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:38 Heat of formation + Delta-G solvation = 71.984140 kcal Electronic energy + Delta-G solvation = -12655.193276 eV Core-core repulsion = 10347.436447 eV Total energy + Delta-G solvation = -2307.756829 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.063 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -43.81698 -37.16585 -35.32611 -33.70557 -31.77371 -30.67395 -27.82177 -25.40049 -23.71097 -23.14313 -21.07151 -19.17228 -18.39032 -17.36136 -17.19863 -16.64767 -16.04356 -15.75474 -14.94616 -14.60125 -14.45004 -14.35745 -13.44269 -12.92144 -12.71488 -12.63397 -12.47191 -12.31698 -11.70055 -11.64635 -11.29453 -11.09714 -11.02865 -10.70322 -10.53471 -8.58729 -8.32278 -6.50902 0.25949 0.67573 1.08556 1.41658 1.46503 1.47228 1.56821 1.82326 1.99130 2.37283 3.01923 3.59166 3.81151 3.82202 4.20546 4.27072 4.51085 4.68282 4.88874 4.93833 5.00288 5.02143 5.52376 5.56611 5.65174 5.78951 5.91445 6.58191 7.18871 7.63940 8.79814 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.041358 B = 0.006699 C = 0.005931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 676.860751 B = 4178.694800 C = 4719.639001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.208 4.208 3 C 0.132 3.868 4 N -0.461 5.461 5 C 0.174 3.826 6 N -0.344 5.344 7 N -0.347 5.347 8 C 0.154 3.846 9 S -0.010 6.010 10 C 0.079 3.921 11 C -0.546 4.546 12 H 0.077 0.923 13 C 0.014 3.986 14 N -0.924 5.924 15 Si 0.984 3.016 16 H -0.261 1.261 17 H -0.280 1.280 18 H -0.261 1.261 19 H 0.130 0.870 20 H 0.112 0.888 21 H 0.092 0.908 22 H 0.102 0.898 23 H 0.148 0.852 24 H 0.275 0.725 25 H 0.016 0.984 26 H 0.015 0.985 27 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.449 4.519 -5.735 19.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.228 4.228 3 C 0.012 3.988 4 N -0.155 5.155 5 C -0.116 4.116 6 N -0.182 5.182 7 N -0.191 5.191 8 C -0.222 4.222 9 S 0.219 5.781 10 C -0.069 4.069 11 C -0.586 4.586 12 H 0.095 0.905 13 C -0.187 4.187 14 N -0.562 5.562 15 Si 0.806 3.194 16 H -0.185 1.185 17 H -0.205 1.205 18 H -0.186 1.186 19 H 0.148 0.852 20 H 0.130 0.870 21 H 0.110 0.890 22 H 0.120 0.880 23 H 0.165 0.835 24 H 0.291 0.709 25 H 0.035 0.965 26 H 0.034 0.966 27 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -17.730 4.306 -5.526 19.064 hybrid contribution 0.493 -0.221 0.235 0.589 sum -17.237 4.086 -5.291 18.487 Atomic orbital electron populations 1.24195 0.94273 1.04215 0.94392 1.22986 0.97175 0.97308 1.05284 1.21394 0.91512 0.99201 0.86727 1.46999 1.11288 1.42655 1.14532 1.27610 1.01963 1.00662 0.81397 1.73815 1.00678 1.16310 1.27437 1.74736 1.24878 1.17662 1.01775 1.27272 0.89029 1.04930 1.01009 1.84761 1.14877 1.66651 1.11842 1.20869 0.89599 0.98849 0.97597 1.20948 0.99444 1.38786 0.99376 0.90516 1.26043 0.99136 0.96202 0.97343 1.70130 1.19877 1.46476 1.19668 0.85224 0.77009 0.78979 0.78200 1.18518 1.20501 1.18576 0.85193 0.86955 0.89016 0.88024 0.83452 0.70923 0.96538 0.96618 0.91987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.52 14.32 67.78 0.97 -0.55 15 2 C -0.21 -3.80 9.85 25.64 0.25 -3.55 15 3 C 0.13 2.41 6.46 85.63 0.55 2.97 15 4 N -0.46 -13.47 2.79 -531.87 -1.49 -14.96 15 5 C 0.17 4.83 12.80 179.77 2.30 7.13 15 6 N -0.34 -14.02 12.17 -59.32 -0.72 -14.74 15 7 N -0.35 -16.74 11.60 -56.85 -0.66 -17.40 15 8 C 0.15 6.39 8.07 179.55 1.45 7.84 15 9 S -0.01 -0.44 21.84 -56.49 -1.23 -1.67 15 10 C 0.08 4.46 4.99 71.23 0.36 4.82 15 11 C -0.55 -31.12 9.13 25.60 0.23 -30.89 15 12 H 0.08 4.10 7.71 -2.91 -0.02 4.08 15 13 C 0.01 0.82 5.46 84.65 0.46 1.29 15 14 N -0.92 -56.62 13.29 21.45 0.28 -56.33 15 15 Si 0.98 43.33 29.54 68.60 2.03 45.36 15 16 H -0.26 -10.90 7.11 99.48 0.71 -10.19 15 17 H -0.28 -12.04 7.11 99.48 0.71 -11.33 15 18 H -0.26 -10.94 7.11 99.48 0.71 -10.23 15 19 H 0.13 0.73 7.84 -2.91 -0.02 0.70 15 20 H 0.11 1.15 8.06 -2.91 -0.02 1.13 15 21 H 0.09 2.22 8.06 -2.91 -0.02 2.20 15 22 H 0.10 1.96 8.02 -2.39 -0.02 1.94 15 23 H 0.15 1.30 7.79 -2.39 -0.02 1.28 15 24 H 0.28 3.68 8.06 -2.91 -0.02 3.66 15 25 H 0.02 1.01 8.14 -2.40 -0.02 0.99 15 26 H 0.02 0.96 8.14 -2.39 -0.02 0.94 15 27 H 0.27 15.48 8.31 -92.71 -0.77 14.71 15 Total: -1.00 -76.77 263.75 5.94 -70.82 By element: Atomic # 1 Polarization: -1.28 SS G_CDS: 1.16 Total: -0.12 kcal Atomic # 6 Polarization: -17.53 SS G_CDS: 6.58 Total: -10.95 kcal Atomic # 7 Polarization: -100.85 SS G_CDS: -2.58 Total: -103.44 kcal Atomic # 14 Polarization: 43.33 SS G_CDS: 2.03 Total: 45.36 kcal Atomic # 16 Polarization: -0.44 SS G_CDS: -1.23 Total: -1.67 kcal Total: -76.77 5.94 -70.82 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075321717.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.806 kcal (2) G-P(sol) polarization free energy of solvation -76.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.822 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds