Wall clock time and date at job start Mon Mar 30 2020 02:40:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46902 * 109.46709 * 2 1 4 4 C 1.50694 * 109.47355 * 120.00176 * 2 1 3 5 5 H 1.08000 * 120.00563 * 120.00152 * 4 2 1 6 6 C 1.37885 * 119.99902 * 299.99988 * 4 2 1 7 7 N 1.31516 * 119.99913 * 0.02562 * 6 4 2 8 8 Si 1.86805 * 119.99854 * 179.72538 * 6 4 2 9 9 H 1.48498 * 109.46909 * 90.00086 * 8 6 4 10 10 H 1.48497 * 109.46701 * 209.99996 * 8 6 4 11 11 H 1.48500 * 109.46867 * 330.00101 * 8 6 4 12 12 C 1.50698 * 109.47177 * 240.00406 * 2 1 3 13 13 C 1.38240 * 119.98530 * 269.72402 * 12 2 1 14 14 C 1.38213 * 120.01401 * 179.72512 * 13 12 2 15 15 C 1.38351 * 119.98910 * 0.54793 * 14 13 12 16 16 Cl 1.73594 * 120.01707 * 179.70470 * 15 14 13 17 17 C 1.38355 * 119.96704 * 359.72524 * 15 14 13 18 18 C 1.38209 * 119.99193 * 0.02562 * 17 15 14 19 19 H 1.08995 * 109.47131 * 299.99758 * 1 2 3 20 20 H 1.08998 * 109.47544 * 60.00205 * 1 2 3 21 21 H 1.09007 * 109.46721 * 180.02562 * 1 2 3 22 22 H 1.00903 * 110.99764 * 180.02562 * 3 2 1 23 23 H 1.00901 * 111.00185 * 303.95004 * 3 2 1 24 24 H 0.97001 * 119.99646 * 180.02562 * 7 6 4 25 25 H 1.08000 * 119.99310 * 359.97438 * 13 12 2 26 26 H 1.08000 * 120.00927 * 180.27074 * 14 13 12 27 27 H 1.08004 * 120.00187 * 179.97438 * 17 15 14 28 28 H 1.08001 * 119.99580 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9427 0.8296 2.6034 8 14 2.3157 -1.1245 4.0079 9 1 3.6257 -0.5556 4.4148 10 1 1.3365 -0.9507 5.1107 11 1 2.4749 -2.5706 3.7105 12 6 2.0323 -0.7103 -1.2305 13 6 2.2681 -2.0720 -1.1943 14 6 2.7234 -2.7250 -2.3242 15 6 2.9541 -2.0138 -3.4883 16 17 3.5332 -2.8320 -4.9055 17 6 2.7233 -0.6501 -3.5221 18 6 2.2631 0.0010 -2.3932 19 1 -0.3633 0.5138 0.8900 20 1 -0.3634 0.5138 -0.8900 21 1 -0.3633 -1.0278 0.0005 22 1 3.0282 1.4120 -0.0004 23 1 1.6441 1.9013 -0.7814 24 1 0.7088 1.1612 3.4844 25 1 2.0926 -2.6263 -0.2842 26 1 2.9034 -3.7896 -2.2971 27 1 2.9036 -0.0942 -4.4304 28 1 2.0834 1.0656 -2.4195 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084356714.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:30 Heat of formation + Delta-G solvation = 18.315501 kcal Electronic energy + Delta-G solvation = -13291.269505 eV Core-core repulsion = 10946.848972 eV Total energy + Delta-G solvation = -2344.420533 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.062 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -39.06987 -36.41939 -35.05658 -31.77318 -30.64853 -29.07222 -27.37104 -25.27158 -22.38050 -22.06756 -19.30722 -16.81825 -16.32481 -14.95082 -14.64126 -14.40670 -13.95998 -13.45423 -13.10482 -12.99695 -12.62466 -11.96032 -11.28769 -11.18450 -11.16131 -10.88302 -10.66531 -10.54531 -10.37816 -10.18805 -9.80998 -8.99633 -8.54434 -8.44058 -7.95015 -7.14682 -5.89711 -4.07874 1.71751 1.79867 2.45455 3.30431 3.37850 3.39772 4.20642 4.43363 5.25123 5.28425 5.31044 5.73208 5.82141 5.97068 6.11608 6.26222 6.44946 6.67841 6.75415 6.88596 7.05975 7.18087 7.20327 7.38629 7.77835 7.96006 8.26119 8.60071 8.93330 9.08254 9.61529 11.10258 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.043637 B = 0.007549 C = 0.006806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 641.506992 B = 3708.065753 C = 4112.818317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.274 3.726 3 N -0.805 5.805 4 C -0.531 4.531 5 H 0.059 0.941 6 C 0.087 3.913 7 N -0.843 5.843 8 Si 0.883 3.117 9 H -0.282 1.282 10 H -0.287 1.287 11 H -0.275 1.275 12 C -0.064 4.064 13 C -0.093 4.093 14 C -0.118 4.118 15 C -0.057 4.057 16 Cl -0.097 7.097 17 C -0.115 4.115 18 C -0.128 4.128 19 H 0.095 0.905 20 H 0.007 0.993 21 H 0.031 0.969 22 H 0.321 0.679 23 H 0.297 0.703 24 H 0.255 0.745 25 H 0.141 0.859 26 H 0.122 0.878 27 H 0.121 0.879 28 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.226 -3.471 -9.386 10.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.183 3.817 3 N -0.331 5.331 4 C -0.569 4.569 5 H 0.077 0.923 6 C -0.120 4.120 7 N -0.477 5.477 8 Si 0.710 3.290 9 H -0.208 1.208 10 H -0.213 1.213 11 H -0.200 1.200 12 C -0.067 4.067 13 C -0.112 4.112 14 C -0.137 4.137 15 C -0.083 4.083 16 Cl -0.069 7.069 17 C -0.134 4.134 18 C -0.146 4.146 19 H 0.114 0.886 20 H 0.026 0.974 21 H 0.050 0.950 22 H 0.133 0.867 23 H 0.109 0.891 24 H 0.065 0.935 25 H 0.159 0.841 26 H 0.140 0.860 27 H 0.139 0.861 28 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 1.784 -3.320 -8.652 9.438 hybrid contribution 0.936 -0.788 -0.290 1.257 sum 2.720 -4.108 -8.942 10.210 Atomic orbital electron populations 1.21737 0.96028 0.99270 1.00895 1.17546 0.92194 0.84385 0.87571 1.59174 1.11623 1.14719 1.47618 1.20918 1.34045 1.12387 0.89574 0.92335 1.24908 0.94339 0.94310 0.98454 1.70018 1.34065 1.21156 1.22452 0.86780 0.78692 0.80150 0.83344 1.20783 1.21316 1.20035 1.21914 0.92950 0.94678 0.97141 1.21342 0.97435 0.95036 0.97339 1.21093 1.00918 0.99778 0.91863 1.20757 1.06252 0.93014 0.88261 1.98314 1.87878 1.79678 1.40983 1.20868 1.01134 0.92339 0.99031 1.21024 1.01072 1.00085 0.92454 0.88611 0.97402 0.94968 0.86737 0.89134 0.93463 0.84120 0.85974 0.86126 0.86014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.79 8.49 37.16 0.32 -2.47 15 2 C 0.27 6.24 0.68 -133.91 -0.09 6.15 15 3 N -0.80 -17.75 7.80 -1.14 -0.01 -17.76 15 4 C -0.53 -13.46 7.55 -34.44 -0.26 -13.72 15 5 H 0.06 1.47 6.02 -52.49 -0.32 1.16 15 6 C 0.09 2.26 5.23 -17.82 -0.09 2.17 15 7 N -0.84 -22.84 10.80 55.43 0.60 -22.24 15 8 Si 0.88 20.37 29.54 -169.99 -5.02 15.35 15 9 H -0.28 -6.58 7.11 56.52 0.40 -6.17 15 10 H -0.29 -6.66 7.11 56.52 0.40 -6.25 15 11 H -0.28 -6.28 7.11 56.52 0.40 -5.88 15 12 C -0.06 -1.28 4.79 -104.62 -0.50 -1.79 15 13 C -0.09 -1.77 8.89 -39.59 -0.35 -2.12 15 14 C -0.12 -1.97 9.83 -39.55 -0.39 -2.36 15 15 C -0.06 -0.91 6.32 -39.50 -0.25 -1.16 15 16 Cl -0.10 -1.37 28.96 -51.86 -1.50 -2.87 15 17 C -0.11 -1.84 9.83 -39.55 -0.39 -2.23 15 18 C -0.13 -2.24 9.29 -39.59 -0.37 -2.61 15 19 H 0.10 2.46 6.07 -51.93 -0.32 2.14 15 20 H 0.01 0.15 8.14 -51.93 -0.42 -0.27 15 21 H 0.03 0.71 8.14 -51.92 -0.42 0.29 15 22 H 0.32 6.93 8.98 -39.29 -0.35 6.58 15 23 H 0.30 5.82 7.37 -39.29 -0.29 5.53 15 24 H 0.26 6.72 8.31 -40.82 -0.34 6.38 15 25 H 0.14 2.75 6.41 -52.49 -0.34 2.42 15 26 H 0.12 1.78 8.06 -52.49 -0.42 1.36 15 27 H 0.12 1.65 8.06 -52.48 -0.42 1.23 15 28 H 0.12 1.96 6.47 -52.49 -0.34 1.62 15 LS Contribution 251.34 15.07 3.79 3.79 Total: -1.00 -26.46 251.34 -7.30 -33.76 By element: Atomic # 1 Polarization: 12.90 SS G_CDS: -2.78 Total: 10.12 kcal Atomic # 6 Polarization: -17.76 SS G_CDS: -2.38 Total: -20.14 kcal Atomic # 7 Polarization: -40.60 SS G_CDS: 0.59 Total: -40.01 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.02 Total: 15.35 kcal Atomic # 17 Polarization: -1.37 SS G_CDS: -1.50 Total: -2.87 kcal Total LS contribution 3.79 Total: 3.79 kcal Total: -26.46 -7.30 -33.76 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084356714.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.072 kcal (2) G-P(sol) polarization free energy of solvation -26.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.756 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds