Wall clock time and date at job start Mon Mar 30 2020 02:40:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46902 * 109.46709 * 2 1 4 4 C 1.50694 * 109.47355 * 120.00176 * 2 1 3 5 5 H 1.08000 * 120.00563 * 120.00152 * 4 2 1 6 6 C 1.37885 * 119.99902 * 299.99988 * 4 2 1 7 7 N 1.31516 * 119.99913 * 0.02562 * 6 4 2 8 8 Si 1.86805 * 119.99854 * 179.72538 * 6 4 2 9 9 H 1.48498 * 109.46909 * 90.00086 * 8 6 4 10 10 H 1.48497 * 109.46701 * 209.99996 * 8 6 4 11 11 H 1.48500 * 109.46867 * 330.00101 * 8 6 4 12 12 C 1.50698 * 109.47177 * 240.00406 * 2 1 3 13 13 C 1.38240 * 119.98530 * 269.72402 * 12 2 1 14 14 C 1.38213 * 120.01401 * 179.72512 * 13 12 2 15 15 C 1.38351 * 119.98910 * 0.54793 * 14 13 12 16 16 Cl 1.73594 * 120.01707 * 179.70470 * 15 14 13 17 17 C 1.38355 * 119.96704 * 359.72524 * 15 14 13 18 18 C 1.38209 * 119.99193 * 0.02562 * 17 15 14 19 19 H 1.08995 * 109.47131 * 299.99758 * 1 2 3 20 20 H 1.08998 * 109.47544 * 60.00205 * 1 2 3 21 21 H 1.09007 * 109.46721 * 180.02562 * 1 2 3 22 22 H 1.00903 * 110.99764 * 180.02562 * 3 2 1 23 23 H 1.00901 * 111.00185 * 303.95004 * 3 2 1 24 24 H 0.97001 * 119.99646 * 180.02562 * 7 6 4 25 25 H 1.08000 * 119.99310 * 359.97438 * 13 12 2 26 26 H 1.08000 * 120.00927 * 180.27074 * 14 13 12 27 27 H 1.08004 * 120.00187 * 179.97438 * 17 15 14 28 28 H 1.08001 * 119.99580 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9427 0.8296 2.6034 8 14 2.3157 -1.1245 4.0079 9 1 3.6257 -0.5556 4.4148 10 1 1.3365 -0.9507 5.1107 11 1 2.4749 -2.5706 3.7105 12 6 2.0323 -0.7103 -1.2305 13 6 2.2681 -2.0720 -1.1943 14 6 2.7234 -2.7250 -2.3242 15 6 2.9541 -2.0138 -3.4883 16 17 3.5332 -2.8320 -4.9055 17 6 2.7233 -0.6501 -3.5221 18 6 2.2631 0.0010 -2.3932 19 1 -0.3633 0.5138 0.8900 20 1 -0.3634 0.5138 -0.8900 21 1 -0.3633 -1.0278 0.0005 22 1 3.0282 1.4120 -0.0004 23 1 1.6441 1.9013 -0.7814 24 1 0.7088 1.1612 3.4844 25 1 2.0926 -2.6263 -0.2842 26 1 2.9034 -3.7896 -2.2971 27 1 2.9036 -0.0942 -4.4304 28 1 2.0834 1.0656 -2.4195 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084356714.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:30 Heat of formation + Delta-G solvation = 3.182103 kcal Electronic energy + Delta-G solvation = -13291.925738 eV Core-core repulsion = 10946.848972 eV Total energy + Delta-G solvation = -2345.076766 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.062 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.49120 -37.74937 -36.60961 -33.65237 -32.02919 -30.55878 -29.12628 -27.19798 -23.90129 -23.44664 -20.96453 -18.22451 -18.13461 -16.63914 -16.20894 -15.90364 -15.68523 -14.97696 -14.48031 -14.37272 -14.29322 -13.61539 -12.97618 -12.80585 -12.70507 -12.49379 -12.36061 -12.15838 -11.98445 -11.72542 -11.56365 -10.81648 -10.42031 -9.88323 -9.37678 -8.83365 -7.86257 -6.08408 0.34818 0.45481 1.20704 1.45511 1.49050 1.55301 2.50750 2.82927 3.34115 3.95906 4.04547 4.25998 4.32146 4.57021 4.62784 4.85125 5.01675 5.10782 5.18733 5.33032 5.38909 5.46750 5.74219 5.79720 5.94034 6.11725 6.40824 6.75918 7.15937 7.35402 7.63227 9.11586 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.043637 B = 0.007549 C = 0.006806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 641.506992 B = 3708.065753 C = 4112.818317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C 0.271 3.729 3 N -0.815 5.815 4 C -0.538 4.538 5 H 0.054 0.946 6 C 0.043 3.957 7 N -0.868 5.868 8 Si 0.935 3.065 9 H -0.284 1.284 10 H -0.289 1.289 11 H -0.271 1.271 12 C -0.087 4.087 13 C -0.109 4.109 14 C -0.115 4.115 15 C -0.057 4.057 16 Cl -0.074 7.074 17 C -0.109 4.109 18 C -0.127 4.127 19 H 0.067 0.933 20 H 0.023 0.977 21 H 0.027 0.973 22 H 0.322 0.678 23 H 0.311 0.689 24 H 0.251 0.749 25 H 0.126 0.874 26 H 0.142 0.858 27 H 0.149 0.851 28 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.002 -4.004 -11.001 12.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.180 3.820 3 N -0.343 5.343 4 C -0.576 4.576 5 H 0.072 0.928 6 C -0.161 4.161 7 N -0.504 5.504 8 Si 0.763 3.237 9 H -0.210 1.210 10 H -0.215 1.215 11 H -0.196 1.196 12 C -0.090 4.090 13 C -0.128 4.128 14 C -0.133 4.133 15 C -0.083 4.083 16 Cl -0.045 7.045 17 C -0.127 4.127 18 C -0.146 4.146 19 H 0.085 0.915 20 H 0.042 0.958 21 H 0.046 0.954 22 H 0.134 0.866 23 H 0.124 0.876 24 H 0.061 0.939 25 H 0.144 0.856 26 H 0.160 0.840 27 H 0.167 0.833 28 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 2.565 -3.866 -10.278 11.277 hybrid contribution 0.721 -0.671 0.084 0.988 sum 3.286 -4.537 -10.194 11.632 Atomic orbital electron populations 1.21604 0.96741 0.98703 1.00178 1.17382 0.91721 0.84794 0.88130 1.59011 1.11752 1.14815 1.48728 1.21256 1.33258 1.12261 0.90844 0.92795 1.25500 0.94790 0.95010 1.00751 1.70148 1.35344 1.22424 1.22477 0.85944 0.77839 0.79340 0.80605 1.21006 1.21493 1.19614 1.21639 0.95119 0.95147 0.97054 1.21257 0.98758 0.94893 0.97857 1.21228 1.00030 1.00782 0.91309 1.20904 1.05243 0.93341 0.88845 1.98327 1.87481 1.79244 1.39444 1.21149 0.99714 0.92463 0.99419 1.21120 1.00738 1.00646 0.92047 0.91465 0.95784 0.95417 0.86636 0.87574 0.93939 0.85610 0.83995 0.83333 0.84792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.28 8.49 71.98 0.61 -4.67 15 2 C 0.27 12.32 0.68 2.03 0.00 12.32 15 3 N -0.82 -35.69 7.80 -157.52 -1.23 -36.92 15 4 C -0.54 -27.47 7.55 25.60 0.19 -27.28 15 5 H 0.05 2.74 6.02 -2.91 -0.02 2.72 15 6 C 0.04 2.28 5.23 84.66 0.44 2.72 15 7 N -0.87 -47.77 10.80 21.45 0.23 -47.54 15 8 Si 0.94 42.26 29.54 68.60 2.03 44.29 15 9 H -0.28 -12.83 7.11 99.48 0.71 -12.12 15 10 H -0.29 -13.02 7.11 99.48 0.71 -12.32 15 11 H -0.27 -11.94 7.11 99.48 0.71 -11.24 15 12 C -0.09 -3.41 4.79 -19.86 -0.10 -3.50 15 13 C -0.11 -4.07 8.89 22.26 0.20 -3.88 15 14 C -0.11 -3.61 9.83 22.29 0.22 -3.39 15 15 C -0.06 -1.67 6.32 22.32 0.14 -1.53 15 16 Cl -0.07 -1.83 28.96 -2.72 -0.08 -1.91 15 17 C -0.11 -3.14 9.83 22.29 0.22 -2.92 15 18 C -0.13 -4.18 9.29 22.26 0.21 -3.98 15 19 H 0.07 3.51 6.07 -2.39 -0.01 3.49 15 20 H 0.02 0.98 8.14 -2.39 -0.02 0.96 15 21 H 0.03 1.24 8.14 -2.38 -0.02 1.22 15 22 H 0.32 13.79 8.98 -89.69 -0.81 12.98 15 23 H 0.31 11.92 7.37 -89.69 -0.66 11.26 15 24 H 0.25 13.46 8.31 -92.71 -0.77 12.69 15 25 H 0.13 4.98 6.41 -2.91 -0.02 4.96 15 26 H 0.14 3.80 8.06 -2.91 -0.02 3.78 15 27 H 0.15 3.44 8.06 -2.91 -0.02 3.41 15 28 H 0.13 4.00 6.47 -2.91 -0.02 3.98 15 Total: -1.00 -55.21 251.34 2.82 -52.39 By element: Atomic # 1 Polarization: 26.06 SS G_CDS: -0.27 Total: 25.79 kcal Atomic # 6 Polarization: -38.24 SS G_CDS: 2.14 Total: -36.10 kcal Atomic # 7 Polarization: -83.46 SS G_CDS: -1.00 Total: -84.46 kcal Atomic # 14 Polarization: 42.26 SS G_CDS: 2.03 Total: 44.29 kcal Atomic # 17 Polarization: -1.83 SS G_CDS: -0.08 Total: -1.91 kcal Total: -55.21 2.82 -52.39 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084356714.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.574 kcal (2) G-P(sol) polarization free energy of solvation -55.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.392 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds