Wall clock time and date at job start Mon Mar 30 2020 02:44:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46893 * 1 3 3 C 1.46906 * 110.99874 * 2 1 4 4 C 1.38907 * 111.00016 * 236.05440 * 2 1 3 5 5 C 1.39545 * 119.84637 * 59.72136 * 4 2 1 6 6 C 1.36341 * 120.17166 * 179.76307 * 5 4 2 7 7 C 1.40910 * 119.85350 * 0.53377 * 6 5 4 8 8 C 1.41124 * 120.15199 * 179.74499 * 7 6 5 9 9 H 1.08005 * 120.00276 * 24.59334 * 8 7 6 10 10 C 1.39868 * 120.00055 * 204.60208 * 8 7 6 11 11 N 1.30903 * 120.00058 * 17.96352 * 10 8 7 12 12 Si 1.86799 * 119.99963 * 197.96330 * 10 8 7 13 13 H 1.48510 * 109.47103 * 60.00006 * 12 10 8 14 14 H 1.48500 * 109.47170 * 179.97438 * 12 10 8 15 15 H 1.48499 * 109.47555 * 299.99851 * 12 10 8 16 16 C 1.40864 * 119.69868 * 359.71447 * 7 6 5 17 17 C 1.36436 * 119.82762 * 0.02562 * 16 7 6 18 18 Cl 1.73591 * 119.93320 * 179.97438 * 17 16 7 19 19 H 1.09008 * 109.46958 * 183.94972 * 1 2 3 20 20 H 1.08996 * 109.47752 * 63.94686 * 1 2 3 21 21 H 1.09001 * 109.47130 * 303.94349 * 1 2 3 22 22 H 1.09004 * 109.46648 * 56.05001 * 3 2 1 23 23 H 1.08997 * 109.47297 * 176.04415 * 3 2 1 24 24 H 1.09001 * 109.47587 * 296.05714 * 3 2 1 25 25 H 1.08010 * 119.91628 * 359.97438 * 5 4 2 26 26 H 1.08003 * 120.07607 * 180.25103 * 6 5 4 27 27 H 0.97001 * 120.00099 * 180.02562 * 11 10 8 28 28 H 1.07995 * 120.08516 * 180.02562 * 16 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9667 -0.7241 -1.0758 5 6 1.6459 -0.3412 -2.3787 6 6 2.1348 -1.0443 -3.4397 7 6 2.9569 -2.1671 -3.2181 8 6 3.4619 -2.9026 -4.3115 9 1 3.5730 -2.4291 -5.2759 10 6 3.8186 -4.2449 -4.1464 11 7 3.3735 -4.9185 -3.1160 12 14 4.9299 -5.0766 -5.3965 13 1 6.2316 -4.3639 -5.4531 14 1 5.1562 -6.4885 -4.9957 15 1 4.2861 -5.0384 -6.7341 16 6 3.2728 -2.5516 -1.9003 17 6 2.7811 -1.8357 -0.8481 18 17 3.1682 -2.3075 0.7770 19 1 -0.3633 -1.0253 0.0708 20 1 -0.3634 0.4513 -0.9232 21 1 -0.3633 0.5738 0.8525 22 1 1.5897 1.9163 0.8525 23 1 3.0827 1.3433 0.0709 24 1 1.7042 1.8725 -0.9232 25 1 1.0114 0.5165 -2.5473 26 1 1.8887 -0.7441 -4.4475 27 1 3.6212 -5.8493 -3.0013 28 1 3.9027 -3.4108 -1.7234 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000214781047.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:45 Heat of formation + Delta-G solvation = -0.335728 kcal Electronic energy + Delta-G solvation = -13239.539360 eV Core-core repulsion = 10894.310049 eV Total energy + Delta-G solvation = -2345.229311 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.062 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.29388 -37.57782 -36.97530 -35.07426 -31.32817 -30.92801 -28.33486 -27.41240 -24.56999 -22.87957 -21.67784 -19.39706 -17.61583 -17.00178 -16.25822 -15.93248 -15.76153 -14.79768 -14.61939 -14.30543 -13.92954 -13.62310 -13.10758 -12.99856 -12.93121 -12.66848 -12.50681 -12.38230 -12.04045 -11.86056 -11.68968 -11.28645 -10.99772 -9.39414 -9.24469 -9.16206 -8.69549 -6.39530 0.75276 0.96830 1.39421 1.49241 1.52926 1.67554 2.18843 2.61241 3.28452 3.57340 4.26989 4.42722 4.52987 4.64070 4.72969 4.78786 5.01719 5.04038 5.04875 5.17370 5.24386 5.40318 5.47793 5.88943 5.93577 6.17183 6.25650 6.45993 6.65994 6.83465 6.96563 8.25577 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.039189 B = 0.008725 C = 0.007612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 714.308007 B = 3208.458057 C = 3677.534111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 N -0.501 5.501 3 C 0.036 3.964 4 C -0.047 4.047 5 C -0.097 4.097 6 C -0.229 4.229 7 C 0.090 3.910 8 C -0.486 4.486 9 H 0.085 0.915 10 C 0.036 3.964 11 N -0.815 5.815 12 Si 0.984 3.016 13 H -0.260 1.260 14 H -0.269 1.269 15 H -0.256 1.256 16 C -0.184 4.184 17 C 0.015 3.985 18 Cl -0.094 7.094 19 H 0.049 0.951 20 H 0.027 0.973 21 H 0.087 0.913 22 H 0.086 0.914 23 H 0.052 0.948 24 H 0.026 0.974 25 H 0.120 0.880 26 H 0.107 0.893 27 H 0.292 0.708 28 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.443 5.199 2.310 5.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 N -0.222 5.222 3 C -0.111 4.111 4 C -0.143 4.143 5 C -0.117 4.117 6 C -0.249 4.249 7 C 0.087 3.913 8 C -0.514 4.514 9 H 0.103 0.897 10 C -0.181 4.181 11 N -0.440 5.440 12 Si 0.804 3.196 13 H -0.184 1.184 14 H -0.193 1.193 15 H -0.180 1.180 16 C -0.205 4.205 17 C -0.013 4.013 18 Cl -0.066 7.066 19 H 0.068 0.932 20 H 0.045 0.955 21 H 0.106 0.894 22 H 0.105 0.895 23 H 0.071 0.929 24 H 0.045 0.955 25 H 0.138 0.862 26 H 0.125 0.875 27 H 0.102 0.898 28 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -1.281 4.704 3.024 5.737 hybrid contribution 0.151 -0.284 -1.065 1.113 sum -1.130 4.420 1.959 4.965 Atomic orbital electron populations 1.22387 0.86376 1.01565 1.00838 1.59096 1.08272 1.13819 1.41015 1.22392 1.00160 0.87717 1.00786 1.17905 1.07860 0.99262 0.89226 1.20888 0.99465 0.99017 0.92354 1.20897 1.04669 1.01358 0.98003 1.17875 0.89249 0.91601 0.92570 1.19814 1.38302 0.95922 0.97383 0.89667 1.26827 0.95194 0.97865 0.98192 1.69896 1.34539 1.10794 1.28782 0.85217 0.78764 0.77212 0.78394 1.18399 1.19304 1.18045 1.20857 1.05662 1.02475 0.91505 1.20598 1.00185 0.96347 0.84136 1.98235 1.93294 1.91719 1.23319 0.93196 0.95473 0.89421 0.89509 0.92873 0.95534 0.86242 0.87468 0.89771 0.87043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.09 9.33 127.69 1.19 2.28 15 2 N -0.50 -18.24 4.35 -744.45 -3.24 -21.48 15 3 C 0.04 1.09 9.38 127.69 1.20 2.29 15 4 C -0.05 -2.03 4.73 38.68 0.18 -1.85 15 5 C -0.10 -4.14 8.47 22.14 0.19 -3.95 15 6 C -0.23 -10.84 9.74 22.48 0.22 -10.62 15 7 C 0.09 4.74 5.57 -21.27 -0.12 4.62 15 8 C -0.49 -25.21 9.03 23.37 0.21 -25.00 15 9 H 0.09 4.19 7.91 -2.91 -0.02 4.16 15 10 C 0.04 1.75 5.13 85.23 0.44 2.19 15 11 N -0.82 -41.90 10.96 21.82 0.24 -41.66 15 12 Si 0.98 36.86 29.60 68.60 2.03 38.89 15 13 H -0.26 -9.56 7.11 99.48 0.71 -8.85 15 14 H -0.27 -9.60 7.11 99.48 0.71 -8.90 15 15 H -0.26 -9.21 7.11 99.48 0.71 -8.50 15 16 C -0.18 -9.71 8.40 22.49 0.19 -9.52 15 17 C 0.01 0.71 6.30 22.19 0.14 0.85 15 18 Cl -0.09 -4.03 28.41 -2.72 -0.08 -4.11 15 19 H 0.05 1.66 8.14 -2.38 -0.02 1.64 15 20 H 0.03 0.80 7.07 -2.39 -0.02 0.78 15 21 H 0.09 2.15 8.12 -2.39 -0.02 2.13 15 22 H 0.09 2.08 8.12 -2.39 -0.02 2.06 15 23 H 0.05 1.69 8.14 -2.39 -0.02 1.68 15 24 H 0.03 0.76 7.32 -2.39 -0.02 0.74 15 25 H 0.12 4.38 6.98 -2.91 -0.02 4.36 15 26 H 0.11 4.70 8.06 -2.91 -0.02 4.68 15 27 H 0.29 13.59 8.30 -92.71 -0.77 12.82 15 28 H 0.11 6.19 6.16 -2.91 -0.02 6.18 15 Total: -1.00 -56.03 255.05 3.95 -52.09 By element: Atomic # 1 Polarization: 13.83 SS G_CDS: 1.15 Total: 14.98 kcal Atomic # 6 Polarization: -42.54 SS G_CDS: 3.84 Total: -38.71 kcal Atomic # 7 Polarization: -60.15 SS G_CDS: -3.00 Total: -63.14 kcal Atomic # 14 Polarization: 36.86 SS G_CDS: 2.03 Total: 38.89 kcal Atomic # 17 Polarization: -4.03 SS G_CDS: -0.08 Total: -4.11 kcal Total: -56.03 3.95 -52.09 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214781047.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.752 kcal (2) G-P(sol) polarization free energy of solvation -56.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.088 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds