Wall clock time and date at job start Mon Mar 30 2020 02:40:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46899 * 109.47254 * 2 1 4 4 C 1.50706 * 109.47238 * 120.00126 * 2 1 3 5 5 H 1.07995 * 120.00167 * 119.72028 * 4 2 1 6 6 C 1.37879 * 119.99394 * 299.99727 * 4 2 1 7 7 N 1.31514 * 120.00338 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99424 * 180.02562 * 6 4 2 9 9 H 1.48492 * 109.47487 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47233 * 120.00158 * 8 6 4 11 11 H 1.48508 * 109.46883 * 239.99963 * 8 6 4 12 12 C 1.50699 * 109.47078 * 239.99797 * 2 1 3 13 13 C 1.38234 * 120.00906 * 119.72734 * 12 2 1 14 14 C 1.38223 * 120.01718 * 179.77404 * 13 12 2 15 15 C 1.38258 * 120.02252 * 0.49675 * 14 13 12 16 16 C 1.38196 * 120.01604 * 359.75735 * 15 14 13 17 17 C 1.38327 * 120.00857 * 300.00193 * 12 2 1 18 18 Cl 1.73602 * 120.01353 * 359.95346 * 17 12 2 19 19 H 1.09001 * 109.46832 * 300.00187 * 1 2 3 20 20 H 1.09002 * 109.47153 * 59.99996 * 1 2 3 21 21 H 1.08996 * 109.46952 * 180.02562 * 1 2 3 22 22 H 1.00907 * 110.99802 * 179.97438 * 3 2 1 23 23 H 1.00898 * 110.99862 * 303.95089 * 3 2 1 24 24 H 0.96996 * 119.99730 * 179.97438 * 7 6 4 25 25 H 1.08013 * 119.99124 * 359.97438 * 13 12 2 26 26 H 1.07996 * 119.98426 * 180.23181 * 14 13 12 27 27 H 1.08003 * 119.99217 * 179.77229 * 15 14 13 28 28 H 1.07994 * 120.00739 * 179.97438 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 2.0324 -0.7105 1.2305 5 1 2.6495 -1.5911 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 0.9428 0.8297 2.6034 8 14 2.3225 -1.1195 4.0079 9 1 3.1474 -2.2862 3.6038 10 1 3.1473 -0.1857 4.8160 11 1 1.1678 -1.5865 4.8165 12 6 2.0323 -0.7104 -1.2304 13 6 2.8224 -0.0372 -2.1433 14 6 3.2871 -0.6900 -3.2696 15 6 2.9535 -2.0137 -3.4890 16 6 2.1594 -2.6864 -2.5797 17 6 1.6982 -2.0348 -1.4495 18 17 0.7011 -2.8793 -0.3065 19 1 -0.3633 0.5139 0.8900 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0276 0.0005 22 1 3.0284 1.4118 0.0004 23 1 1.6442 1.9012 -0.7814 24 1 0.7082 1.1609 3.4843 25 1 3.0793 0.9983 -1.9749 26 1 3.9074 -0.1646 -3.9806 27 1 3.3138 -2.5222 -4.3710 28 1 1.8985 -3.7202 -2.7515 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238421326.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:34 Heat of formation + Delta-G solvation = 10.378598 kcal Electronic energy + Delta-G solvation = -13683.691982 eV Core-core repulsion = 11338.927279 eV Total energy + Delta-G solvation = -2344.764703 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.062 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.46145 -37.08973 -37.00339 -33.66783 -31.61551 -30.68698 -29.19886 -27.11911 -23.91221 -23.16442 -21.01751 -18.24481 -17.99870 -16.65517 -16.19184 -15.91711 -15.77489 -14.83431 -14.58819 -14.35602 -14.31432 -13.31834 -12.98026 -12.91798 -12.67588 -12.52910 -12.23803 -12.12401 -12.00340 -11.44968 -11.11250 -10.74811 -10.35350 -9.67444 -9.29288 -8.88649 -7.82468 -6.00286 0.39546 0.53386 1.40771 1.45361 1.53507 1.55369 2.51638 2.89134 3.36521 4.03857 4.11137 4.24961 4.35328 4.61904 4.64050 4.89820 4.99245 5.15847 5.26642 5.41914 5.49643 5.58465 5.63688 5.83749 6.01754 6.12929 6.44572 6.77942 7.18433 7.34292 7.67048 9.15747 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.031472 B = 0.011802 C = 0.010326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 889.472256 B = 2371.852386 C = 2710.886410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.276 3.724 3 N -0.817 5.817 4 C -0.504 4.504 5 H 0.040 0.960 6 C 0.045 3.955 7 N -0.871 5.871 8 Si 0.925 3.075 9 H -0.275 1.275 10 H -0.285 1.285 11 H -0.286 1.286 12 C -0.094 4.094 13 C -0.140 4.140 14 C -0.112 4.112 15 C -0.125 4.125 16 C -0.122 4.122 17 C -0.048 4.048 18 Cl -0.073 7.073 19 H 0.062 0.938 20 H 0.009 0.991 21 H 0.054 0.946 22 H 0.323 0.677 23 H 0.311 0.689 24 H 0.249 0.751 25 H 0.130 0.870 26 H 0.154 0.846 27 H 0.161 0.839 28 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.124 -4.392 -11.364 12.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.184 3.816 3 N -0.345 5.345 4 C -0.543 4.543 5 H 0.058 0.942 6 C -0.158 4.158 7 N -0.508 5.508 8 Si 0.753 3.247 9 H -0.200 1.200 10 H -0.211 1.211 11 H -0.213 1.213 12 C -0.097 4.097 13 C -0.158 4.158 14 C -0.130 4.130 15 C -0.143 4.143 16 C -0.140 4.140 17 C -0.075 4.075 18 Cl -0.044 7.044 19 H 0.081 0.919 20 H 0.029 0.971 21 H 0.072 0.928 22 H 0.136 0.864 23 H 0.123 0.877 24 H 0.059 0.941 25 H 0.147 0.853 26 H 0.172 0.828 27 H 0.179 0.821 28 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 2.563 -4.259 -10.404 11.531 hybrid contribution 0.464 -0.635 0.469 0.916 sum 3.027 -4.895 -9.935 11.482 Atomic orbital electron populations 1.21904 0.96959 1.00810 0.99213 1.17357 0.91799 0.84582 0.87871 1.58919 1.11759 1.15005 1.48798 1.20869 1.32225 1.10867 0.90309 0.94198 1.25364 0.95129 0.95048 1.00280 1.70154 1.35960 1.22607 1.22077 0.86041 0.78129 0.78927 0.81638 1.20009 1.21084 1.21255 1.21507 0.96198 0.93835 0.98137 1.21238 0.98866 1.00806 0.94886 1.21512 0.99296 0.95225 0.96987 1.21369 0.98263 0.94828 0.99841 1.21330 0.98834 1.00957 0.92920 1.20999 0.99714 0.93561 0.93271 1.98311 1.68093 1.76779 1.61186 0.91942 0.97149 0.92755 0.86384 0.87669 0.94132 0.85253 0.82799 0.82120 0.83904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.41 8.26 71.98 0.59 -5.81 15 2 C 0.28 13.09 0.55 2.04 0.00 13.09 15 3 N -0.82 -37.03 7.48 -157.51 -1.18 -38.21 15 4 C -0.50 -26.83 6.45 25.60 0.17 -26.67 15 5 H 0.04 2.20 7.26 -2.91 -0.02 2.18 15 6 C 0.04 2.44 5.23 84.66 0.44 2.88 15 7 N -0.87 -49.66 10.80 21.45 0.23 -49.42 15 8 Si 0.92 44.32 29.54 68.60 2.03 46.35 15 9 H -0.28 -13.09 7.11 99.48 0.71 -12.38 15 10 H -0.28 -13.49 7.11 99.48 0.71 -12.78 15 11 H -0.29 -13.62 7.11 99.48 0.71 -12.92 15 12 C -0.09 -3.84 4.73 -19.84 -0.09 -3.93 15 13 C -0.14 -4.70 9.04 22.27 0.20 -4.50 15 14 C -0.11 -2.96 10.05 22.27 0.22 -2.74 15 15 C -0.13 -3.14 10.05 22.26 0.22 -2.92 15 16 C -0.12 -3.70 9.83 22.29 0.22 -3.48 15 17 C -0.05 -1.87 5.93 22.32 0.13 -1.74 15 18 Cl -0.07 -2.96 23.57 -2.72 -0.06 -3.03 15 19 H 0.06 3.44 6.07 -2.39 -0.01 3.43 15 20 H 0.01 0.44 8.14 -2.39 -0.02 0.42 15 21 H 0.05 2.59 4.94 -2.39 -0.01 2.58 15 22 H 0.32 14.00 8.05 -89.69 -0.72 13.28 15 23 H 0.31 12.58 8.24 -89.70 -0.74 11.84 15 24 H 0.25 13.80 8.31 -92.71 -0.77 13.03 15 25 H 0.13 4.04 6.19 -2.90 -0.02 4.03 15 26 H 0.15 2.90 8.06 -2.91 -0.02 2.88 15 27 H 0.16 2.72 8.06 -2.91 -0.02 2.69 15 28 H 0.14 3.64 8.06 -2.91 -0.02 3.61 15 Total: -1.00 -61.11 244.22 2.86 -58.25 By element: Atomic # 1 Polarization: 22.15 SS G_CDS: -0.27 Total: 21.88 kcal Atomic # 6 Polarization: -37.93 SS G_CDS: 2.11 Total: -35.82 kcal Atomic # 7 Polarization: -86.69 SS G_CDS: -0.95 Total: -87.63 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.35 kcal Atomic # 17 Polarization: -2.96 SS G_CDS: -0.06 Total: -3.03 kcal Total: -61.11 2.86 -58.25 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238421326.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.627 kcal (2) G-P(sol) polarization free energy of solvation -61.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.248 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds