Wall clock time and date at job start Mon Mar 30 2020 02:40:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46897 * 109.47025 * 2 1 4 4 C 1.50700 * 109.47245 * 239.99752 * 2 1 3 5 5 H 1.07992 * 119.99987 * 240.00003 * 4 2 1 6 6 C 1.37876 * 119.99759 * 60.00423 * 4 2 1 7 7 N 1.31513 * 120.00071 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99836 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.47413 * 359.97438 * 8 6 4 10 10 H 1.48506 * 109.47309 * 119.99859 * 8 6 4 11 11 H 1.48501 * 109.46864 * 239.99405 * 8 6 4 12 12 C 1.50706 * 109.46679 * 120.00035 * 2 1 3 13 13 C 1.38264 * 119.99067 * 269.99501 * 12 2 1 14 14 C 1.38224 * 120.02445 * 180.02562 * 13 12 2 15 15 C 1.38237 * 120.01313 * 0.26351 * 14 13 12 16 16 C 1.38338 * 119.98297 * 359.50743 * 15 14 13 17 17 Cl 1.73597 * 120.00852 * 180.25600 * 16 15 14 18 18 C 1.38189 * 119.99237 * 90.02396 * 12 2 1 19 19 H 1.08994 * 109.46959 * 300.00340 * 1 2 3 20 20 H 1.08995 * 109.46694 * 59.99945 * 1 2 3 21 21 H 1.08992 * 109.46890 * 179.97438 * 1 2 3 22 22 H 1.00907 * 110.99809 * 179.97438 * 3 2 1 23 23 H 1.00895 * 111.00283 * 303.95267 * 3 2 1 24 24 H 0.97000 * 119.99966 * 179.97438 * 7 6 4 25 25 H 1.07997 * 119.98741 * 359.97438 * 13 12 2 26 26 H 1.08002 * 119.99032 * 179.97438 * 14 13 12 27 27 H 1.07995 * 120.00242 * 179.74655 * 15 14 13 28 28 H 1.08000 * 120.00840 * 359.97438 * 18 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6994 -0.2394 -2.4827 7 7 0.9430 0.8296 -2.6034 8 14 2.3215 -1.1204 -4.0078 9 1 3.1465 -2.2871 -3.6037 10 1 1.1662 -1.5867 -4.8160 11 1 3.1467 -0.1874 -4.8164 12 6 2.0323 -0.7105 1.2305 13 6 2.2627 0.0008 2.3936 14 6 2.7239 -0.6500 3.5225 15 6 2.9601 -2.0116 3.4876 16 6 2.7252 -2.7245 2.3256 17 17 3.0154 -4.4355 2.2830 18 6 2.2630 -2.0725 1.1960 19 1 -0.3633 0.5139 0.8899 20 1 -0.3632 0.5138 -0.8900 21 1 -0.3633 -1.0276 -0.0005 22 1 3.0284 1.4119 0.0004 23 1 1.6442 1.9013 -0.7813 24 1 0.7090 1.1613 -3.4844 25 1 2.0831 1.0654 2.4198 26 1 2.9041 -0.0938 4.4305 27 1 3.3243 -2.5192 4.3685 28 1 2.0830 -2.6280 0.2874 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238493802.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:36 Heat of formation + Delta-G solvation = 9.181919 kcal Electronic energy + Delta-G solvation = -13373.153482 eV Core-core repulsion = 11028.336887 eV Total energy + Delta-G solvation = -2344.816595 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.062 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -38.90129 -36.22228 -35.23535 -31.72777 -30.28503 -29.21228 -27.25052 -25.34360 -22.48666 -21.83926 -19.28387 -16.54587 -16.36245 -14.89185 -14.74404 -14.39581 -13.93106 -13.15168 -13.09493 -12.91906 -12.42812 -11.75101 -11.26464 -11.15258 -10.95761 -10.84451 -10.74098 -10.59354 -10.42213 -10.22429 -9.75081 -9.54368 -8.66379 -8.20863 -7.98096 -7.23340 -6.12110 -4.29301 1.82531 1.95995 2.60686 3.18737 3.28379 3.32800 4.26604 4.36264 5.09045 5.36743 5.45755 5.83934 5.98173 6.14463 6.23925 6.47714 6.57281 6.85114 6.93203 6.96118 7.04821 7.28104 7.42777 7.58163 7.68371 7.88369 8.12017 8.64643 8.87356 9.07436 9.43736 10.83312 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.028198 B = 0.009907 C = 0.007862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.756099 B = 2825.554555 C = 3560.646464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.263 3.737 3 N -0.846 5.846 4 C -0.543 4.543 5 H 0.061 0.939 6 C 0.069 3.931 7 N -0.889 5.889 8 Si 0.893 3.107 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.284 1.284 12 C -0.024 4.024 13 C -0.106 4.106 14 C -0.124 4.124 15 C -0.136 4.136 16 C -0.042 4.042 17 Cl -0.096 7.096 18 C -0.100 4.100 19 H 0.018 0.982 20 H 0.086 0.914 21 H 0.030 0.970 22 H 0.314 0.686 23 H 0.357 0.643 24 H 0.264 0.736 25 H 0.134 0.866 26 H 0.119 0.881 27 H 0.119 0.881 28 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.316 -3.234 7.765 8.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.172 3.828 3 N -0.376 5.376 4 C -0.583 4.583 5 H 0.079 0.921 6 C -0.133 4.133 7 N -0.529 5.529 8 Si 0.721 3.279 9 H -0.197 1.197 10 H -0.209 1.209 11 H -0.210 1.210 12 C -0.025 4.025 13 C -0.124 4.124 14 C -0.142 4.142 15 C -0.155 4.155 16 C -0.068 4.068 17 Cl -0.067 7.067 18 C -0.119 4.119 19 H 0.037 0.963 20 H 0.105 0.895 21 H 0.049 0.951 22 H 0.123 0.877 23 H 0.174 0.826 24 H 0.074 0.926 25 H 0.152 0.848 26 H 0.137 0.863 27 H 0.137 0.863 28 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 1.853 -3.195 8.313 9.096 hybrid contribution 0.822 -0.984 -1.843 2.246 sum 2.675 -4.179 6.470 8.153 Atomic orbital electron populations 1.21694 0.95988 0.99305 1.01027 1.17307 0.92064 0.86099 0.87354 1.59392 1.11498 1.14859 1.51850 1.21993 1.31885 1.13372 0.91031 0.92087 1.24962 0.94293 0.94967 0.99055 1.69686 1.36446 1.22929 1.23801 0.86513 0.78721 0.79828 0.82840 1.19726 1.20870 1.20989 1.20494 0.93449 0.92355 0.96201 1.21316 0.98109 1.01057 0.91898 1.21034 1.00922 0.93549 0.98677 1.20797 1.03661 0.94501 0.96571 1.20924 1.05754 0.83681 0.96484 1.98315 1.95022 1.14566 1.98824 1.21214 0.98601 0.95220 0.96830 0.96253 0.89497 0.95060 0.87683 0.82638 0.92580 0.84804 0.86268 0.86336 0.84419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.86 8.49 37.16 0.32 -2.54 15 2 C 0.26 6.11 0.76 -133.90 -0.10 6.01 15 3 N -0.85 -18.92 7.72 -1.13 -0.01 -18.93 15 4 C -0.54 -13.79 7.55 -34.44 -0.26 -14.05 15 5 H 0.06 1.57 6.03 -52.49 -0.32 1.26 15 6 C 0.07 1.78 5.22 -17.82 -0.09 1.68 15 7 N -0.89 -22.98 9.57 55.43 0.53 -22.45 15 8 Si 0.89 20.36 29.54 -169.99 -5.02 15.33 15 9 H -0.27 -6.26 7.11 56.52 0.40 -5.86 15 10 H -0.28 -6.47 7.11 56.52 0.40 -6.07 15 11 H -0.28 -6.48 7.11 56.52 0.40 -6.08 15 12 C -0.02 -0.50 4.79 -104.63 -0.50 -1.00 15 13 C -0.11 -1.95 9.32 -39.58 -0.37 -2.32 15 14 C -0.12 -1.97 10.05 -39.59 -0.40 -2.37 15 15 C -0.14 -2.20 9.83 -39.55 -0.39 -2.59 15 16 C -0.04 -0.75 6.32 -39.50 -0.25 -1.00 15 17 Cl -0.10 -1.54 28.96 -51.86 -1.50 -3.04 15 18 C -0.10 -2.03 8.67 -39.55 -0.34 -2.37 15 19 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 15 20 H 0.09 2.20 6.07 -51.93 -0.32 1.88 15 21 H 0.03 0.71 8.14 -51.93 -0.42 0.29 15 22 H 0.31 6.87 8.98 -39.29 -0.35 6.52 15 23 H 0.36 8.57 6.99 -39.29 -0.27 8.30 15 24 H 0.26 6.60 8.31 -40.82 -0.34 6.26 15 25 H 0.13 2.43 7.40 -52.49 -0.39 2.05 15 26 H 0.12 1.53 8.06 -52.49 -0.42 1.11 15 27 H 0.12 1.61 8.06 -52.49 -0.42 1.19 15 28 H 0.14 2.95 6.42 -52.49 -0.34 2.61 15 LS Contribution 250.72 15.07 3.78 3.78 Total: -1.00 -25.01 250.72 -7.42 -32.43 By element: Atomic # 1 Polarization: 16.25 SS G_CDS: -2.81 Total: 13.44 kcal Atomic # 6 Polarization: -18.17 SS G_CDS: -2.39 Total: -20.56 kcal Atomic # 7 Polarization: -41.90 SS G_CDS: 0.52 Total: -41.38 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.02 Total: 15.33 kcal Atomic # 17 Polarization: -1.54 SS G_CDS: -1.50 Total: -3.04 kcal Total LS contribution 3.78 Total: 3.78 kcal Total: -25.01 -7.42 -32.43 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238493802.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.613 kcal (2) G-P(sol) polarization free energy of solvation -25.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.431 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds