Wall clock time and date at job start Mon Mar 30 2020 02:44:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46897 * 110.99679 * 2 1 4 4 C 1.38769 * 110.99853 * 123.95468 * 2 1 3 5 5 C 1.38668 * 120.22465 * 300.27768 * 4 2 1 6 6 C 1.38196 * 120.18420 * 180.25752 * 5 4 2 7 7 C 1.38845 * 120.64278 * 359.73939 * 6 5 4 8 8 C 1.37589 * 120.45268 * 359.97438 * 7 6 5 9 9 Cl 1.73593 * 120.10566 * 179.97438 * 8 7 6 10 10 C 1.40878 * 119.79202 * 0.02562 * 8 7 6 11 11 C 1.41015 * 120.31314 * 179.97438 * 10 8 7 12 12 H 1.07999 * 120.00398 * 224.45009 * 11 10 8 13 13 C 1.39919 * 119.99909 * 44.44593 * 11 10 8 14 14 N 1.30889 * 120.00114 * 20.86787 * 13 11 10 15 15 Si 1.86802 * 120.00076 * 201.13802 * 13 11 10 16 16 H 1.48503 * 109.47182 * 179.72795 * 15 13 11 17 17 H 1.48504 * 109.47115 * 299.72819 * 15 13 11 18 18 H 1.48500 * 109.47046 * 59.72821 * 15 13 11 19 19 H 1.08998 * 109.47301 * 296.04706 * 1 2 3 20 20 H 1.09005 * 109.47308 * 56.04200 * 1 2 3 21 21 H 1.09002 * 109.47659 * 176.04844 * 1 2 3 22 22 H 1.09003 * 109.47059 * 183.95232 * 3 2 1 23 23 H 1.09000 * 109.47735 * 303.95355 * 3 2 1 24 24 H 1.09000 * 109.47527 * 63.95580 * 3 2 1 25 25 H 1.07999 * 119.90932 * 0.02562 * 5 4 2 26 26 H 1.07996 * 119.67947 * 179.71984 * 6 5 4 27 27 H 1.07998 * 119.77339 * 179.97438 * 7 6 5 28 28 H 0.97005 * 120.00319 * 174.87263 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3714 0.0000 4 6 1.9663 -0.7236 1.0746 5 6 1.6524 -0.3502 2.3727 6 6 2.1524 -1.0683 3.4424 7 6 2.9682 -2.1723 3.2342 8 6 3.2916 -2.5695 1.9572 9 17 4.3129 -3.9508 1.7074 10 6 2.7922 -1.8511 0.8531 11 6 3.1171 -2.2482 -0.4604 12 1 3.4053 -1.5085 -1.1926 13 6 3.0663 -3.6008 -0.8151 14 7 2.3520 -4.4370 -0.1055 15 14 4.0239 -4.2144 -2.2970 16 1 3.8097 -5.6754 -2.4544 17 1 3.5526 -3.5108 -3.5169 18 1 5.4705 -3.9448 -2.0978 19 1 -0.3634 0.4512 0.9233 20 1 -0.3634 0.5741 -0.8524 21 1 -0.3634 -1.0252 -0.0708 22 1 3.0827 1.3433 -0.0708 23 1 1.5897 1.9164 -0.8524 24 1 1.7043 1.8724 0.9233 25 1 1.0185 0.5063 2.5483 26 1 1.9064 -0.7675 4.4500 27 1 3.3516 -2.7230 4.0804 28 1 2.2563 -5.3585 -0.3930 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258103643.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:44 Heat of formation + Delta-G solvation = 23.886017 kcal Electronic energy + Delta-G solvation = -13603.784846 eV Core-core repulsion = 11259.605869 eV Total energy + Delta-G solvation = -2344.178977 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.062 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.50247 -35.70854 -34.39146 -33.47473 -29.79702 -28.53075 -26.86624 -25.26609 -23.35496 -21.00706 -19.62840 -17.31569 -15.80266 -15.12564 -14.48116 -14.16855 -14.11969 -13.40363 -12.93210 -12.63075 -12.01082 -11.72089 -11.53279 -11.37695 -11.15050 -11.01419 -10.88939 -10.63517 -10.19522 -9.99118 -9.91005 -9.45305 -8.56471 -7.47550 -7.35208 -7.07595 -6.64203 -4.28733 2.58783 2.76656 3.17002 3.19521 3.24968 3.87737 4.08050 4.66312 4.94299 5.34622 5.84581 5.94140 5.98961 6.10410 6.11988 6.34024 6.38583 6.42690 6.53997 6.97069 7.01840 7.31110 7.55666 7.60645 7.78682 7.84118 8.03592 8.31519 8.64286 8.86494 9.03832 10.34003 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.025040 B = 0.014174 C = 0.010109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1117.952352 B = 1975.011019 C = 2769.027775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 N -0.478 5.478 3 C 0.035 3.965 4 C -0.007 4.007 5 C -0.119 4.119 6 C -0.223 4.223 7 C -0.091 4.091 8 C -0.075 4.075 9 Cl -0.097 7.097 10 C 0.143 3.857 11 C -0.442 4.442 12 H 0.087 0.913 13 C 0.090 3.910 14 N -0.778 5.778 15 Si 0.897 3.103 16 H -0.281 1.281 17 H -0.267 1.267 18 H -0.263 1.263 19 H 0.015 0.985 20 H 0.055 0.945 21 H 0.067 0.933 22 H 0.063 0.937 23 H 0.056 0.944 24 H 0.015 0.985 25 H 0.090 0.910 26 H 0.096 0.904 27 H 0.099 0.901 28 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.424 3.951 0.758 4.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 N -0.198 5.198 3 C -0.113 4.113 4 C -0.102 4.102 5 C -0.140 4.140 6 C -0.243 4.243 7 C -0.110 4.110 8 C -0.103 4.103 9 Cl -0.068 7.068 10 C 0.139 3.861 11 C -0.471 4.471 12 H 0.105 0.895 13 C -0.130 4.130 14 N -0.402 5.402 15 Si 0.722 3.278 16 H -0.206 1.206 17 H -0.192 1.192 18 H -0.188 1.188 19 H 0.033 0.967 20 H 0.073 0.927 21 H 0.086 0.914 22 H 0.082 0.918 23 H 0.075 0.925 24 H 0.034 0.966 25 H 0.108 0.892 26 H 0.114 0.886 27 H 0.117 0.883 28 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -0.214 3.337 0.323 3.359 hybrid contribution 0.031 -0.143 0.142 0.204 sum -0.183 3.194 0.465 3.233 Atomic orbital electron populations 1.22322 0.88026 1.01960 0.98597 1.58842 1.06430 1.11450 1.43056 1.22370 1.00762 0.89313 0.98846 1.18510 1.03721 1.00999 0.86999 1.21098 1.00254 0.98807 0.93836 1.20083 1.07090 1.00334 0.96817 1.20522 0.98779 0.97064 0.94685 1.20862 1.02459 0.93404 0.93624 1.98205 1.67061 1.44182 1.97396 1.17129 0.87881 0.88345 0.92779 1.19110 1.39890 0.91965 0.96134 0.89530 1.25668 0.93793 0.96094 0.97460 1.69818 1.28656 1.05845 1.35882 0.86521 0.81639 0.77779 0.81881 1.20614 1.19197 1.18786 0.96684 0.92666 0.91427 0.91812 0.92544 0.96619 0.89210 0.88629 0.88314 0.90938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.71 9.33 60.06 0.56 1.27 15 2 N -0.48 -10.19 4.38 -186.37 -0.82 -11.00 15 3 C 0.03 0.61 9.38 60.06 0.56 1.18 15 4 C -0.01 -0.17 4.74 -83.32 -0.40 -0.56 15 5 C -0.12 -2.61 8.54 -39.44 -0.34 -2.95 15 6 C -0.22 -4.81 10.03 -39.37 -0.40 -5.21 15 7 C -0.09 -2.09 9.80 -39.59 -0.39 -2.47 15 8 C -0.08 -1.89 5.93 -38.82 -0.23 -2.12 15 9 Cl -0.10 -2.33 24.93 -51.86 -1.29 -3.62 15 10 C 0.14 3.72 5.28 -106.60 -0.56 3.15 15 11 C -0.44 -11.62 8.14 -37.90 -0.31 -11.93 15 12 H 0.09 2.28 7.93 -52.49 -0.42 1.86 15 13 C 0.09 2.27 3.75 -17.32 -0.06 2.21 15 14 N -0.78 -20.29 11.16 55.55 0.62 -19.67 15 15 Si 0.90 19.52 29.61 -169.99 -5.03 14.48 15 16 H -0.28 -5.98 7.11 56.52 0.40 -5.58 15 17 H -0.27 -5.71 7.11 56.52 0.40 -5.31 15 18 H -0.26 -5.74 7.11 56.52 0.40 -5.33 15 19 H 0.01 0.26 7.09 -51.93 -0.37 -0.11 15 20 H 0.05 0.88 8.12 -51.93 -0.42 0.45 15 21 H 0.07 1.36 8.14 -51.93 -0.42 0.93 15 22 H 0.06 1.16 8.14 -51.93 -0.42 0.73 15 23 H 0.06 0.86 8.12 -51.93 -0.42 0.44 15 24 H 0.02 0.26 7.34 -51.93 -0.38 -0.12 15 25 H 0.09 1.77 7.00 -52.49 -0.37 1.40 15 26 H 0.10 1.80 8.06 -52.49 -0.42 1.37 15 27 H 0.10 2.04 8.06 -52.49 -0.42 1.61 15 28 H 0.28 6.82 8.31 -40.82 -0.34 6.48 15 LS Contribution 252.63 15.07 3.81 3.81 Total: -1.00 -27.12 252.63 -7.47 -34.60 By element: Atomic # 1 Polarization: 2.04 SS G_CDS: -3.20 Total: -1.16 kcal Atomic # 6 Polarization: -15.88 SS G_CDS: -1.56 Total: -17.44 kcal Atomic # 7 Polarization: -30.48 SS G_CDS: -0.20 Total: -30.67 kcal Atomic # 14 Polarization: 19.52 SS G_CDS: -5.03 Total: 14.48 kcal Atomic # 17 Polarization: -2.33 SS G_CDS: -1.29 Total: -3.62 kcal Total LS contribution 3.81 Total: 3.81 kcal Total: -27.12 -7.47 -34.60 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258103643.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.483 kcal (2) G-P(sol) polarization free energy of solvation -27.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.596 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds