Wall clock time and date at job start Mon Mar 30 2020 02:44:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46897 * 110.99679 * 2 1 4 4 C 1.38769 * 110.99853 * 123.95468 * 2 1 3 5 5 C 1.38668 * 120.22465 * 300.27768 * 4 2 1 6 6 C 1.38196 * 120.18420 * 180.25752 * 5 4 2 7 7 C 1.38845 * 120.64278 * 359.73939 * 6 5 4 8 8 C 1.37589 * 120.45268 * 359.97438 * 7 6 5 9 9 Cl 1.73593 * 120.10566 * 179.97438 * 8 7 6 10 10 C 1.40878 * 119.79202 * 0.02562 * 8 7 6 11 11 C 1.41015 * 120.31314 * 179.97438 * 10 8 7 12 12 H 1.07999 * 120.00398 * 224.45009 * 11 10 8 13 13 C 1.39919 * 119.99909 * 44.44593 * 11 10 8 14 14 N 1.30889 * 120.00114 * 20.86787 * 13 11 10 15 15 Si 1.86802 * 120.00076 * 201.13802 * 13 11 10 16 16 H 1.48503 * 109.47182 * 179.72795 * 15 13 11 17 17 H 1.48504 * 109.47115 * 299.72819 * 15 13 11 18 18 H 1.48500 * 109.47046 * 59.72821 * 15 13 11 19 19 H 1.08998 * 109.47301 * 296.04706 * 1 2 3 20 20 H 1.09005 * 109.47308 * 56.04200 * 1 2 3 21 21 H 1.09002 * 109.47659 * 176.04844 * 1 2 3 22 22 H 1.09003 * 109.47059 * 183.95232 * 3 2 1 23 23 H 1.09000 * 109.47735 * 303.95355 * 3 2 1 24 24 H 1.09000 * 109.47527 * 63.95580 * 3 2 1 25 25 H 1.07999 * 119.90932 * 0.02562 * 5 4 2 26 26 H 1.07996 * 119.67947 * 179.71984 * 6 5 4 27 27 H 1.07998 * 119.77339 * 179.97438 * 7 6 5 28 28 H 0.97005 * 120.00319 * 174.87263 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3714 0.0000 4 6 1.9663 -0.7236 1.0746 5 6 1.6524 -0.3502 2.3727 6 6 2.1524 -1.0683 3.4424 7 6 2.9682 -2.1723 3.2342 8 6 3.2916 -2.5695 1.9572 9 17 4.3129 -3.9508 1.7074 10 6 2.7922 -1.8511 0.8531 11 6 3.1171 -2.2482 -0.4604 12 1 3.4053 -1.5085 -1.1926 13 6 3.0663 -3.6008 -0.8151 14 7 2.3520 -4.4370 -0.1055 15 14 4.0239 -4.2144 -2.2970 16 1 3.8097 -5.6754 -2.4544 17 1 3.5526 -3.5108 -3.5169 18 1 5.4705 -3.9448 -2.0978 19 1 -0.3634 0.4512 0.9233 20 1 -0.3634 0.5741 -0.8524 21 1 -0.3634 -1.0252 -0.0708 22 1 3.0827 1.3433 -0.0708 23 1 1.5897 1.9164 -0.8524 24 1 1.7043 1.8724 0.9233 25 1 1.0185 0.5063 2.5483 26 1 1.9064 -0.7675 4.4500 27 1 3.3516 -2.7230 4.0804 28 1 2.2563 -5.3585 -0.3930 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258103643.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:44 Heat of formation + Delta-G solvation = 9.148574 kcal Electronic energy + Delta-G solvation = -13604.423909 eV Core-core repulsion = 11259.605869 eV Total energy + Delta-G solvation = -2344.818041 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.062 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.21465 -37.42864 -36.17040 -35.32731 -31.62641 -30.25794 -28.30250 -27.09046 -24.97826 -22.81132 -21.33853 -19.16695 -17.51780 -16.89911 -16.19662 -15.89413 -15.65351 -15.12159 -14.55827 -14.36473 -13.77769 -13.28909 -13.13906 -12.96579 -12.88322 -12.64627 -12.48402 -12.37758 -11.95423 -11.76781 -11.70669 -11.26227 -10.43235 -9.17784 -9.00137 -8.90783 -8.49637 -6.21017 0.79486 0.96630 1.40777 1.47900 1.51050 2.04358 2.29562 2.82964 3.39687 3.49737 4.31895 4.43625 4.52772 4.59107 4.66391 4.74478 4.81023 5.03542 5.05322 5.19601 5.24828 5.44082 5.77028 5.82860 6.00818 6.27072 6.37266 6.45259 6.78112 7.01731 7.21656 8.49772 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.025040 B = 0.014174 C = 0.010109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1117.952352 B = 1975.011019 C = 2769.027775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 N -0.506 5.506 3 C 0.038 3.962 4 C -0.008 4.008 5 C -0.126 4.126 6 C -0.210 4.210 7 C -0.103 4.103 8 C -0.098 4.098 9 Cl -0.099 7.099 10 C 0.109 3.891 11 C -0.470 4.470 12 H 0.073 0.927 13 C 0.062 3.938 14 N -0.811 5.811 15 Si 0.946 3.054 16 H -0.273 1.273 17 H -0.262 1.262 18 H -0.265 1.265 19 H 0.029 0.971 20 H 0.083 0.917 21 H 0.042 0.958 22 H 0.050 0.950 23 H 0.083 0.917 24 H 0.028 0.972 25 H 0.117 0.883 26 H 0.130 0.870 27 H 0.118 0.882 28 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.960 5.144 1.236 5.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 N -0.226 5.226 3 C -0.109 4.109 4 C -0.103 4.103 5 C -0.146 4.146 6 C -0.230 4.230 7 C -0.122 4.122 8 C -0.127 4.127 9 Cl -0.070 7.070 10 C 0.105 3.895 11 C -0.500 4.500 12 H 0.091 0.909 13 C -0.155 4.155 14 N -0.436 5.436 15 Si 0.769 3.231 16 H -0.198 1.198 17 H -0.186 1.186 18 H -0.190 1.190 19 H 0.047 0.953 20 H 0.101 0.899 21 H 0.061 0.939 22 H 0.069 0.931 23 H 0.101 0.899 24 H 0.047 0.953 25 H 0.135 0.865 26 H 0.148 0.852 27 H 0.136 0.864 28 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -0.755 4.546 0.804 4.677 hybrid contribution 0.138 -0.374 0.112 0.415 sum -0.617 4.171 0.916 4.315 Atomic orbital electron populations 1.22295 0.86483 1.01066 1.00573 1.58792 1.07915 1.13211 1.42673 1.22373 1.00053 0.87740 1.00685 1.18799 1.02699 1.00288 0.88563 1.21392 1.00426 0.99626 0.93162 1.20560 1.05011 0.98932 0.98519 1.20833 0.99139 0.97795 0.94475 1.21165 1.03196 0.93789 0.94507 1.98185 1.67080 1.44290 1.97487 1.17537 0.88956 0.89876 0.93127 1.19097 1.42115 0.92368 0.96375 0.90890 1.26162 0.93913 0.95887 0.99545 1.69861 1.30095 1.06105 1.37568 0.85763 0.80185 0.77668 0.79452 1.19788 1.18600 1.19014 0.95282 0.89858 0.93928 0.93080 0.89877 0.95325 0.86540 0.85180 0.86413 0.90791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.50 9.33 127.69 1.19 2.70 15 2 N -0.51 -20.84 4.38 -743.55 -3.25 -24.10 15 3 C 0.04 1.27 9.38 127.69 1.20 2.47 15 4 C -0.01 -0.37 4.74 38.95 0.18 -0.19 15 5 C -0.13 -5.17 8.54 22.36 0.19 -4.98 15 6 C -0.21 -8.46 10.03 22.41 0.22 -8.24 15 7 C -0.10 -4.57 9.80 22.26 0.22 -4.35 15 8 C -0.10 -4.93 5.93 22.76 0.14 -4.80 15 9 Cl -0.10 -4.78 24.93 -2.72 -0.07 -4.85 15 10 C 0.11 5.70 5.28 -21.15 -0.11 5.59 15 11 C -0.47 -25.18 8.14 23.36 0.19 -24.98 15 12 H 0.07 3.96 7.93 -2.91 -0.02 3.93 15 13 C 0.06 3.15 3.75 85.24 0.32 3.47 15 14 N -0.81 -42.94 11.16 21.83 0.24 -42.70 15 15 Si 0.95 40.34 29.61 68.60 2.03 42.37 15 16 H -0.27 -11.17 7.11 99.48 0.71 -10.46 15 17 H -0.26 -10.78 7.11 99.48 0.71 -10.08 15 18 H -0.27 -11.28 7.11 99.48 0.71 -10.58 15 19 H 0.03 0.92 7.09 -2.39 -0.02 0.91 15 20 H 0.08 2.42 8.12 -2.38 -0.02 2.40 15 21 H 0.04 1.68 8.14 -2.39 -0.02 1.66 15 22 H 0.05 1.79 8.14 -2.39 -0.02 1.78 15 23 H 0.08 2.28 8.12 -2.39 -0.02 2.26 15 24 H 0.03 0.87 7.34 -2.39 -0.02 0.85 15 25 H 0.12 4.13 7.00 -2.91 -0.02 4.11 15 26 H 0.13 4.31 8.06 -2.91 -0.02 4.28 15 27 H 0.12 4.64 8.06 -2.91 -0.02 4.62 15 28 H 0.28 13.96 8.31 -92.70 -0.77 13.19 15 Total: -1.00 -57.57 252.63 3.84 -53.73 By element: Atomic # 1 Polarization: 7.71 SS G_CDS: 1.15 Total: 8.86 kcal Atomic # 6 Polarization: -37.06 SS G_CDS: 3.74 Total: -33.32 kcal Atomic # 7 Polarization: -63.79 SS G_CDS: -3.01 Total: -66.80 kcal Atomic # 14 Polarization: 40.34 SS G_CDS: 2.03 Total: 42.37 kcal Atomic # 17 Polarization: -4.78 SS G_CDS: -0.07 Total: -4.85 kcal Total: -57.57 3.84 -53.73 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258103643.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.877 kcal (2) G-P(sol) polarization free energy of solvation -57.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.729 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds