Wall clock time and date at job start Mon Mar 30 2020 02:44:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46907 * 1 3 3 C 1.46901 * 110.99883 * 2 1 4 4 C 1.39739 * 110.99573 * 123.95142 * 2 1 3 5 5 C 1.38223 * 119.95848 * 300.01733 * 4 2 1 6 6 C 1.40613 * 119.69571 * 180.02562 * 5 4 2 7 7 C 1.41352 * 120.19574 * 179.97438 * 6 5 4 8 8 H 1.07992 * 119.99705 * 334.86776 * 7 6 5 9 9 C 1.39914 * 119.99829 * 154.86796 * 7 6 5 10 10 N 1.30845 * 120.00361 * 342.67406 * 9 7 6 11 11 Si 1.86800 * 120.00068 * 162.67710 * 9 7 6 12 12 H 1.48499 * 109.46717 * 359.97438 * 11 9 7 13 13 H 1.48499 * 109.47244 * 120.00047 * 11 9 7 14 14 H 1.48504 * 109.47105 * 240.00342 * 11 9 7 15 15 C 1.40809 * 119.60774 * 359.97438 * 6 5 4 16 16 C 1.37604 * 119.90452 * 359.97438 * 15 6 5 17 17 C 1.38657 * 120.31226 * 0.02562 * 16 15 6 18 18 Cl 1.73595 * 119.80640 * 180.27320 * 17 16 15 19 19 H 1.09004 * 109.46793 * 296.05115 * 1 2 3 20 20 H 1.08996 * 109.47023 * 56.04707 * 1 2 3 21 21 H 1.08994 * 109.47157 * 176.05049 * 1 2 3 22 22 H 1.09006 * 109.46653 * 183.95811 * 3 2 1 23 23 H 1.08997 * 109.47025 * 303.94842 * 3 2 1 24 24 H 1.08993 * 109.47525 * 63.95295 * 3 2 1 25 25 H 1.08005 * 120.15064 * 359.97438 * 5 4 2 26 26 H 0.96996 * 120.00544 * 179.97438 * 10 9 7 27 27 H 1.08000 * 120.04689 * 179.97438 * 15 6 5 28 28 H 1.08009 * 119.84666 * 180.02562 * 16 15 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9697 -0.7286 1.0822 5 6 1.6577 -0.3483 2.3739 6 6 2.1650 -1.0851 3.4588 7 6 1.8531 -0.7052 4.7841 8 1 1.5929 0.3194 5.0050 9 6 1.8815 -1.6566 5.8096 10 7 1.8579 -2.9322 5.5195 11 14 1.9530 -1.1057 7.5931 12 1 1.9708 0.3780 7.6524 13 1 0.7613 -1.6163 8.3171 14 1 3.1846 -1.6407 8.2274 15 6 2.9855 -2.2036 3.2171 16 6 3.2849 -2.5684 1.9245 17 6 2.7827 -1.8392 0.8575 18 17 3.1629 -2.3153 -0.7681 19 1 -0.3633 0.4513 0.9233 20 1 -0.3633 0.5739 -0.8524 21 1 -0.3633 -1.0252 -0.0708 22 1 3.0829 1.3432 -0.0709 23 1 1.5899 1.9163 -0.8525 24 1 1.7045 1.8724 0.9232 25 1 1.0279 0.5115 2.5491 26 1 1.8779 -3.5918 6.2303 27 1 3.3793 -2.7744 4.0451 28 1 3.9140 -3.4268 1.7403 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259441371.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:47 Heat of formation + Delta-G solvation = -1.972437 kcal Electronic energy + Delta-G solvation = -13235.380802 eV Core-core repulsion = 10890.080518 eV Total energy + Delta-G solvation = -2345.300284 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.062 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.27894 -37.50157 -36.89615 -35.13409 -31.70354 -30.30558 -28.41547 -27.22423 -25.14667 -22.72202 -21.80250 -19.12686 -17.61310 -16.81767 -16.46977 -16.12432 -15.84078 -14.95567 -14.71280 -14.26643 -13.75482 -13.43451 -13.13500 -13.06761 -12.96980 -12.77352 -12.57048 -12.44308 -12.08428 -11.76231 -11.65539 -11.24071 -10.97181 -9.46116 -9.36028 -9.14116 -8.70688 -6.42633 0.78011 0.86933 1.38653 1.46285 1.53716 1.81823 2.18319 2.60066 3.09547 3.55710 4.30869 4.33837 4.47928 4.63268 4.67318 4.85649 4.92061 4.97726 4.98769 5.11030 5.17787 5.27857 5.55519 5.85301 5.92315 6.09230 6.12031 6.40123 6.60196 6.83483 6.90073 8.25683 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.036289 B = 0.008534 C = 0.007345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.405262 B = 3280.168419 C = 3811.045941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 N -0.511 5.511 3 C 0.035 3.965 4 C 0.121 3.879 5 C -0.253 4.253 6 C 0.092 3.908 7 C -0.490 4.490 8 H 0.078 0.922 9 C 0.038 3.962 10 N -0.818 5.818 11 Si 0.984 3.016 12 H -0.258 1.258 13 H -0.265 1.265 14 H -0.263 1.263 15 C -0.176 4.176 16 C -0.092 4.092 17 C -0.133 4.133 18 Cl -0.093 7.093 19 H 0.022 0.978 20 H 0.095 0.905 21 H 0.055 0.945 22 H 0.059 0.941 23 H 0.094 0.906 24 H 0.022 0.978 25 H 0.100 0.900 26 H 0.292 0.708 27 H 0.113 0.887 28 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.328 3.715 -4.031 5.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 N -0.232 5.232 3 C -0.112 4.112 4 C 0.027 3.973 5 C -0.274 4.274 6 C 0.089 3.911 7 C -0.519 4.519 8 H 0.096 0.904 9 C -0.178 4.178 10 N -0.443 5.443 11 Si 0.804 3.196 12 H -0.182 1.182 13 H -0.190 1.190 14 H -0.187 1.187 15 C -0.195 4.195 16 C -0.112 4.112 17 C -0.161 4.161 18 Cl -0.065 7.065 19 H 0.041 0.959 20 H 0.113 0.887 21 H 0.074 0.926 22 H 0.078 0.922 23 H 0.113 0.887 24 H 0.041 0.959 25 H 0.118 0.882 26 H 0.103 0.897 27 H 0.131 0.869 28 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -0.168 3.227 -4.535 5.569 hybrid contribution -0.261 0.252 1.434 1.479 sum -0.430 3.480 -3.101 4.681 Atomic orbital electron populations 1.22392 0.85726 1.02068 1.01039 1.59694 1.08791 1.14321 1.40422 1.22396 1.00518 0.87199 1.01045 1.18240 0.96335 0.93825 0.88884 1.21345 1.08577 1.05301 0.92223 1.17875 0.88701 0.91161 0.93406 1.19850 1.42549 0.96934 0.92563 0.90435 1.26770 0.90929 0.94099 1.06021 1.69856 1.34370 1.02680 1.37421 0.85132 0.79077 0.79807 0.75580 1.18186 1.19020 1.18711 1.21266 1.02164 1.01139 0.94965 1.20746 0.99899 0.98868 0.91646 1.20315 1.10341 1.01250 0.84214 1.98209 1.93803 1.91675 1.22786 0.95925 0.88651 0.92615 0.92241 0.88739 0.95893 0.88218 0.89729 0.86915 0.86311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.11 9.34 127.69 1.19 2.30 15 2 N -0.51 -18.85 4.37 -745.15 -3.26 -22.11 15 3 C 0.04 1.09 9.38 127.69 1.20 2.29 15 4 C 0.12 5.37 4.73 38.17 0.18 5.55 15 5 C -0.25 -12.15 8.30 22.85 0.19 -11.96 15 6 C 0.09 4.82 5.57 -21.30 -0.12 4.71 15 7 C -0.49 -25.51 9.05 23.44 0.21 -25.29 15 8 H 0.08 3.91 7.90 -2.91 -0.02 3.88 15 9 C 0.04 1.84 5.14 85.25 0.44 2.28 15 10 N -0.82 -41.18 10.97 21.82 0.24 -40.94 15 11 Si 0.98 36.59 29.59 68.60 2.03 38.62 15 12 H -0.26 -9.45 7.11 99.48 0.71 -8.74 15 13 H -0.27 -9.48 7.11 99.48 0.71 -8.77 15 14 H -0.26 -9.38 7.11 99.48 0.71 -8.67 15 15 C -0.18 -9.02 8.69 22.75 0.20 -8.83 15 16 C -0.09 -4.29 9.79 22.22 0.22 -4.07 15 17 C -0.13 -5.96 6.36 22.66 0.14 -5.82 15 18 Cl -0.09 -3.60 28.41 -2.72 -0.08 -3.68 15 19 H 0.02 0.74 7.11 -2.39 -0.02 0.73 15 20 H 0.09 2.38 8.12 -2.39 -0.02 2.36 15 21 H 0.05 1.88 8.14 -2.39 -0.02 1.86 15 22 H 0.06 1.91 8.14 -2.38 -0.02 1.89 15 23 H 0.09 2.30 8.12 -2.39 -0.02 2.28 15 24 H 0.02 0.73 7.33 -2.39 -0.02 0.71 15 25 H 0.10 4.62 7.00 -2.91 -0.02 4.60 15 26 H 0.29 13.16 8.30 -92.71 -0.77 12.39 15 27 H 0.11 5.98 6.18 -2.91 -0.02 5.96 15 28 H 0.12 4.98 8.06 -2.91 -0.02 4.96 15 Total: -1.00 -55.45 255.41 3.94 -51.51 By element: Atomic # 1 Polarization: 14.29 SS G_CDS: 1.15 Total: 15.44 kcal Atomic # 6 Polarization: -42.70 SS G_CDS: 3.85 Total: -38.85 kcal Atomic # 7 Polarization: -60.03 SS G_CDS: -3.02 Total: -63.05 kcal Atomic # 14 Polarization: 36.59 SS G_CDS: 2.03 Total: 38.62 kcal Atomic # 17 Polarization: -3.60 SS G_CDS: -0.08 Total: -3.68 kcal Total: -55.45 3.94 -51.51 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259441371.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.539 kcal (2) G-P(sol) polarization free energy of solvation -55.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds