Wall clock time and date at job start Mon Mar 30 2020 02:45:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46910 * 110.99712 * 2 1 4 4 H 1.09001 * 109.46912 * 185.64770 * 3 2 1 5 5 C 1.50700 * 109.46977 * 305.64980 * 3 2 1 6 6 H 1.07999 * 119.99770 * 120.00444 * 5 3 2 7 7 C 1.37879 * 120.00096 * 299.99470 * 5 3 2 8 8 N 1.31508 * 119.99816 * 180.02562 * 7 5 3 9 9 Si 1.86803 * 119.99697 * 0.02562 * 7 5 3 10 10 H 1.48498 * 109.47120 * 89.99729 * 9 7 5 11 11 H 1.48498 * 109.46702 * 209.99379 * 9 7 5 12 12 H 1.48498 * 109.47223 * 329.99462 * 9 7 5 13 13 C 1.50699 * 109.46672 * 65.64806 * 3 2 1 14 14 C 1.38246 * 119.99004 * 29.97392 * 13 3 2 15 15 C 1.38207 * 120.01073 * 179.97438 * 14 13 3 16 16 C 1.38354 * 119.99150 * 0.02562 * 15 14 13 17 17 Cl 1.73598 * 120.01245 * 180.02562 * 16 15 14 18 18 C 1.38348 * 119.97088 * 0.28236 * 16 15 14 19 19 C 1.38211 * 119.98644 * 359.39933 * 18 16 15 20 20 H 1.08997 * 109.46782 * 185.10986 * 1 2 3 21 21 H 1.08996 * 109.47164 * 305.11184 * 1 2 3 22 22 H 1.09004 * 109.47371 * 65.11404 * 1 2 3 23 23 H 1.00897 * 111.00397 * 236.05239 * 2 1 3 24 24 H 0.96999 * 120.00048 * 180.02562 * 8 7 5 25 25 H 1.08002 * 119.99009 * 359.97438 * 14 13 3 26 26 H 1.08003 * 120.00384 * 180.02562 * 15 14 13 27 27 H 1.08001 * 120.00738 * 179.71871 * 18 16 15 28 28 H 1.07998 * 119.99735 * 180.32375 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 1 3.0804 1.3443 -0.1011 5 6 1.4023 2.1372 -1.1546 6 1 0.8181 3.0265 -0.9695 7 6 1.6056 1.7025 -2.4471 8 7 1.0884 2.3710 -3.4546 9 14 2.6156 0.1640 -2.7671 10 1 1.7224 -1.0223 -2.7725 11 1 3.2914 0.2808 -4.0842 12 1 3.6358 0.0106 -1.6990 13 6 1.6284 2.0503 1.2944 14 6 1.4854 1.3044 2.4496 15 6 1.1494 1.9266 3.6370 16 6 0.9555 3.2961 3.6696 17 17 0.5340 4.0782 5.1610 18 6 1.0925 4.0412 2.5119 19 6 1.4350 3.4188 1.3264 20 1 -0.3633 -1.0236 0.0915 21 1 -0.3633 0.5911 0.8406 22 1 -0.3634 0.4325 -0.9323 23 1 1.8307 -0.5260 -0.7814 24 1 1.2310 2.0650 -4.3640 25 1 1.6364 0.2353 2.4239 26 1 1.0381 1.3438 4.5395 27 1 0.9368 5.1096 2.5357 28 1 1.5471 4.0010 0.4237 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259483418.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:55 Heat of formation + Delta-G solvation = 23.688123 kcal Electronic energy + Delta-G solvation = -13308.005294 eV Core-core repulsion = 10963.817736 eV Total energy + Delta-G solvation = -2344.187558 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.062 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.02773 -36.47802 -35.44957 -32.19870 -30.67485 -30.19828 -27.10328 -24.34053 -22.72010 -22.07758 -19.79119 -16.90600 -16.53341 -15.83294 -14.73848 -14.34537 -14.19052 -13.57797 -13.13545 -12.96968 -12.76008 -12.43875 -12.01357 -11.41095 -11.19043 -10.98905 -10.91589 -10.63896 -10.40946 -10.20597 -10.16282 -9.52626 -8.82239 -8.47067 -7.92807 -7.42149 -6.29436 -4.32490 1.72883 1.86179 2.48689 3.08519 3.19799 3.22964 4.17271 4.23328 4.97517 5.29269 5.34625 5.42381 5.74209 5.98130 6.07439 6.19906 6.29243 6.49283 6.53959 6.75689 6.83208 6.92223 6.94604 7.21127 7.38353 7.48962 7.85703 8.19578 8.35752 8.74127 9.29602 10.82615 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.051079 B = 0.007576 C = 0.007030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 548.033887 B = 3694.946442 C = 3981.737264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 N -0.695 5.695 3 C 0.199 3.801 4 H 0.058 0.942 5 C -0.544 4.544 6 H 0.084 0.916 7 C 0.076 3.924 8 N -0.887 5.887 9 Si 0.866 3.134 10 H -0.274 1.274 11 H -0.289 1.289 12 H -0.259 1.259 13 C -0.030 4.030 14 C -0.099 4.099 15 C -0.124 4.124 16 C -0.051 4.051 17 Cl -0.097 7.097 18 C -0.121 4.121 19 C -0.092 4.092 20 H 0.040 0.960 21 H 0.056 0.944 22 H 0.041 0.959 23 H 0.318 0.682 24 H 0.267 0.733 25 H 0.137 0.863 26 H 0.121 0.879 27 H 0.123 0.877 28 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.449 -0.964 10.747 10.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 N -0.329 5.329 3 C 0.092 3.908 4 H 0.076 0.924 5 C -0.583 4.583 6 H 0.101 0.899 7 C -0.128 4.128 8 N -0.524 5.524 9 Si 0.694 3.306 10 H -0.201 1.201 11 H -0.216 1.216 12 H -0.183 1.183 13 C -0.031 4.031 14 C -0.118 4.118 15 C -0.143 4.143 16 C -0.077 4.077 17 Cl -0.069 7.069 18 C -0.140 4.140 19 C -0.111 4.111 20 H 0.059 0.941 21 H 0.075 0.925 22 H 0.059 0.941 23 H 0.138 0.862 24 H 0.077 0.923 25 H 0.155 0.845 26 H 0.139 0.861 27 H 0.141 0.859 28 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 0.446 -0.963 11.355 11.405 hybrid contribution 0.179 -0.434 -1.179 1.269 sum 0.626 -1.396 10.177 10.291 Atomic orbital electron populations 1.21961 0.88913 0.98896 1.01655 1.61197 1.08148 1.16119 1.47410 1.18640 0.96196 0.85631 0.90367 0.92421 1.21636 1.34074 1.13092 0.89544 0.89857 1.25002 0.94803 0.96789 0.96208 1.69878 1.43985 1.39360 0.99202 0.87120 0.81480 0.83790 0.78192 1.20065 1.21610 1.18344 1.20218 0.94286 0.93257 0.95314 1.21151 0.98829 1.00864 0.90913 1.20949 1.02226 0.92268 0.98865 1.20821 1.06985 0.93209 0.86718 1.98316 1.92334 1.81388 1.34851 1.21006 1.01788 0.99730 0.91428 1.21334 0.97449 0.95153 0.97158 0.94103 0.92480 0.94073 0.86175 0.92336 0.84538 0.86057 0.85884 0.83964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.72 9.88 60.06 0.59 1.31 15 2 N -0.69 -14.58 5.62 -116.49 -0.65 -15.24 15 3 C 0.20 4.42 2.42 -70.01 -0.17 4.25 15 4 H 0.06 1.33 7.20 -51.93 -0.37 0.95 15 5 C -0.54 -13.96 7.05 -34.44 -0.24 -14.20 15 6 H 0.08 2.31 6.28 -52.49 -0.33 1.98 15 7 C 0.08 2.03 5.32 -17.82 -0.09 1.94 15 8 N -0.89 -25.49 13.96 55.43 0.77 -24.71 15 9 Si 0.87 19.97 24.59 -169.99 -4.18 15.79 15 10 H -0.27 -6.16 7.05 56.52 0.40 -5.76 15 11 H -0.29 -6.79 7.11 56.52 0.40 -6.38 15 12 H -0.26 -5.71 6.53 56.52 0.37 -5.34 15 13 C -0.03 -0.60 4.65 -104.62 -0.49 -1.08 15 14 C -0.10 -1.74 8.27 -39.59 -0.33 -2.07 15 15 C -0.12 -1.97 9.83 -39.55 -0.39 -2.36 15 16 C -0.05 -0.82 6.32 -39.50 -0.25 -1.07 15 17 Cl -0.10 -1.37 28.96 -51.86 -1.50 -2.87 15 18 C -0.12 -2.02 9.83 -39.55 -0.39 -2.41 15 19 C -0.09 -1.76 8.88 -39.59 -0.35 -2.11 15 20 H 0.04 0.71 8.14 -51.93 -0.42 0.29 15 21 H 0.06 1.12 6.45 -51.93 -0.34 0.79 15 22 H 0.04 0.93 7.03 -51.93 -0.36 0.57 15 23 H 0.32 6.83 4.32 -39.29 -0.17 6.66 15 24 H 0.27 7.24 8.31 -40.82 -0.34 6.90 15 25 H 0.14 2.31 7.40 -52.49 -0.39 1.92 15 26 H 0.12 1.65 8.06 -52.48 -0.42 1.23 15 27 H 0.12 1.81 8.06 -52.49 -0.42 1.39 15 28 H 0.14 2.84 6.43 -52.49 -0.34 2.51 15 LS Contribution 243.93 15.07 3.68 3.68 Total: -1.00 -26.73 243.93 -6.73 -33.46 By element: Atomic # 1 Polarization: 10.43 SS G_CDS: -2.74 Total: 7.69 kcal Atomic # 6 Polarization: -15.69 SS G_CDS: -2.11 Total: -17.80 kcal Atomic # 7 Polarization: -40.07 SS G_CDS: 0.12 Total: -39.95 kcal Atomic # 14 Polarization: 19.97 SS G_CDS: -4.18 Total: 15.79 kcal Atomic # 17 Polarization: -1.37 SS G_CDS: -1.50 Total: -2.87 kcal Total LS contribution 3.68 Total: 3.68 kcal Total: -26.73 -6.73 -33.46 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259483418.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.152 kcal (2) G-P(sol) polarization free energy of solvation -26.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.463 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds