Wall clock time and date at job start Mon Mar 30 2020 02:45:55
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46900 * 1
3 3 C 1.46910 * 110.99712 * 2 1
4 4 H 1.09001 * 109.46912 * 185.64770 * 3 2 1
5 5 C 1.50700 * 109.46977 * 305.64980 * 3 2 1
6 6 H 1.07999 * 119.99770 * 120.00444 * 5 3 2
7 7 C 1.37879 * 120.00096 * 299.99470 * 5 3 2
8 8 N 1.31508 * 119.99816 * 180.02562 * 7 5 3
9 9 Si 1.86803 * 119.99697 * 0.02562 * 7 5 3
10 10 H 1.48498 * 109.47120 * 89.99729 * 9 7 5
11 11 H 1.48498 * 109.46702 * 209.99379 * 9 7 5
12 12 H 1.48498 * 109.47223 * 329.99462 * 9 7 5
13 13 C 1.50699 * 109.46672 * 65.64806 * 3 2 1
14 14 C 1.38246 * 119.99004 * 29.97392 * 13 3 2
15 15 C 1.38207 * 120.01073 * 179.97438 * 14 13 3
16 16 C 1.38354 * 119.99150 * 0.02562 * 15 14 13
17 17 Cl 1.73598 * 120.01245 * 180.02562 * 16 15 14
18 18 C 1.38348 * 119.97088 * 0.28236 * 16 15 14
19 19 C 1.38211 * 119.98644 * 359.39933 * 18 16 15
20 20 H 1.08997 * 109.46782 * 185.10986 * 1 2 3
21 21 H 1.08996 * 109.47164 * 305.11184 * 1 2 3
22 22 H 1.09004 * 109.47371 * 65.11404 * 1 2 3
23 23 H 1.00897 * 111.00397 * 236.05239 * 2 1 3
24 24 H 0.96999 * 120.00048 * 180.02562 * 8 7 5
25 25 H 1.08002 * 119.99009 * 359.97438 * 14 13 3
26 26 H 1.08003 * 120.00384 * 180.02562 * 15 14 13
27 27 H 1.08001 * 120.00738 * 179.71871 * 18 16 15
28 28 H 1.07998 * 119.99735 * 180.32375 * 19 18 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4690 0.0000 0.0000
3 6 1.9954 1.3715 0.0000
4 1 3.0804 1.3443 -0.1011
5 6 1.4023 2.1372 -1.1546
6 1 0.8181 3.0265 -0.9695
7 6 1.6056 1.7025 -2.4471
8 7 1.0884 2.3710 -3.4546
9 14 2.6156 0.1640 -2.7671
10 1 1.7224 -1.0223 -2.7725
11 1 3.2914 0.2808 -4.0842
12 1 3.6358 0.0106 -1.6990
13 6 1.6284 2.0503 1.2944
14 6 1.4854 1.3044 2.4496
15 6 1.1494 1.9266 3.6370
16 6 0.9555 3.2961 3.6696
17 17 0.5340 4.0782 5.1610
18 6 1.0925 4.0412 2.5119
19 6 1.4350 3.4188 1.3264
20 1 -0.3633 -1.0236 0.0915
21 1 -0.3633 0.5911 0.8406
22 1 -0.3634 0.4325 -0.9323
23 1 1.8307 -0.5260 -0.7814
24 1 1.2310 2.0650 -4.3640
25 1 1.6364 0.2353 2.4239
26 1 1.0381 1.3438 4.5395
27 1 0.9368 5.1096 2.5357
28 1 1.5471 4.0010 0.4237
RHF calculation, no. of doubly occupied orbitals= 38
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000259483418.mol2 28
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:45:55
Heat of formation + Delta-G solvation = 7.063518 kcal
Electronic energy + Delta-G solvation = -13308.726191 eV
Core-core repulsion = 10963.817736 eV
Total energy + Delta-G solvation = -2344.908455 eV
No. of doubly occupied orbitals = 38
Molecular weight
(most abundant/longest-lived isotopes) = 225.062 amu
Computer time = 0.17 seconds
Orbital eigenvalues (eV)
-40.47169 -37.90072 -36.91590 -34.20205 -32.12234 -31.62765 -28.85856 -26.14799
-24.29482 -23.48868 -21.38457 -18.78494 -18.04349 -17.47897 -16.26049 -16.08773
-15.66254 -15.19263 -14.86491 -14.34664 -14.21689 -14.06552 -13.66985 -12.99733
-12.73787 -12.72601 -12.33867 -12.27765 -11.87485 -11.80570 -11.67934 -11.39403
-10.86552 -9.82810 -9.34913 -9.18775 -8.35882 -6.42066 0.34175 0.49861
1.22595 1.24415 1.32529 1.39424 2.23307 2.80869 2.99714 3.61540
4.04489 4.09361 4.19841 4.59044 4.63516 4.67671 4.87952 4.90500
5.11214 5.15659 5.25136 5.37932 5.40722 5.48658 5.81636 5.95431
6.05240 6.45296 6.48637 6.65427 7.23313 8.79499
Molecular weight = 225.06amu
Principal moments of inertia in cm(-1)
A = 0.051079 B = 0.007576 C = 0.007030
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 548.033887 B = 3694.946442 C = 3981.737264
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.041 3.959
2 N -0.682 5.682
3 C 0.203 3.797
4 H 0.052 0.948
5 C -0.537 4.537
6 H 0.049 0.951
7 C 0.021 3.979
8 N -0.938 5.938
9 Si 0.923 3.077
10 H -0.260 1.260
11 H -0.295 1.295
12 H -0.240 1.240
13 C -0.054 4.054
14 C -0.095 4.095
15 C -0.114 4.114
16 C -0.050 4.050
17 Cl -0.073 7.073
18 C -0.119 4.119
19 C -0.109 4.109
20 H 0.072 0.928
21 H 0.060 0.940
22 H 0.007 0.993
23 H 0.316 0.684
24 H 0.266 0.734
25 H 0.146 0.854
26 H 0.152 0.848
27 H 0.140 0.860
28 H 0.119 0.881
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.731 -2.388 13.109 13.345
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.109 4.109
2 N -0.315 5.315
3 C 0.095 3.905
4 H 0.069 0.931
5 C -0.576 4.576
6 H 0.067 0.933
7 C -0.178 4.178
8 N -0.577 5.577
9 Si 0.748 3.252
10 H -0.185 1.185
11 H -0.222 1.222
12 H -0.164 1.164
13 C -0.055 4.055
14 C -0.113 4.113
15 C -0.133 4.133
16 C -0.076 4.076
17 Cl -0.045 7.045
18 C -0.137 4.137
19 C -0.128 4.128
20 H 0.091 0.909
21 H 0.079 0.921
22 H 0.026 0.974
23 H 0.136 0.864
24 H 0.075 0.925
25 H 0.164 0.836
26 H 0.170 0.830
27 H 0.158 0.842
28 H 0.136 0.864
Dipole moment (debyes) X Y Z Total
from point charges 0.728 -2.392 13.749 13.975
hybrid contribution 0.022 0.127 -1.783 1.788
sum 0.750 -2.265 11.966 12.202
Atomic orbital electron populations
1.21959 0.88239 1.00655 1.00022 1.61210 1.08568 1.14855 1.46899
1.18495 0.95551 0.86007 0.90466 0.93083 1.21852 1.32740 1.12074
0.90950 0.93318 1.25784 0.96067 0.99971 0.95996 1.70028 1.46415
1.41642 0.99651 0.86181 0.80501 0.80399 0.78093 1.18515 1.22228
1.16387 1.20074 0.96646 0.93598 0.95170 1.21187 0.98472 1.01122
0.90561 1.21233 1.00455 0.92345 0.99254 1.20939 1.05794 0.93542
0.87359 1.98330 1.92030 1.81019 1.33073 1.21112 1.01019 1.00682
0.90905 1.21182 0.99056 0.95091 0.97430 0.90897 0.92145 0.97422
0.86388 0.92481 0.83593 0.83019 0.84224 0.86352
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.04 1.59 9.88 127.69 1.26 2.85 15
2 N -0.68 -27.44 5.62 -522.46 -2.94 -30.38 15
3 C 0.20 8.95 2.42 43.42 0.11 9.06 15
4 H 0.05 2.32 7.20 -2.39 -0.02 2.30 15
5 C -0.54 -28.38 7.05 25.60 0.18 -28.20 15
6 H 0.05 2.86 6.28 -2.91 -0.02 2.84 15
7 C 0.02 1.15 5.32 84.66 0.45 1.60 15
8 N -0.94 -55.93 13.96 21.45 0.30 -55.63 15
9 Si 0.92 41.14 24.59 68.60 1.69 42.82 15
10 H -0.26 -10.91 7.05 99.48 0.70 -10.21 15
11 H -0.29 -13.38 7.11 99.48 0.71 -12.68 15
12 H -0.24 -9.90 6.53 99.48 0.65 -9.26 15
13 C -0.05 -2.12 4.65 -19.86 -0.09 -2.21 15
14 C -0.10 -3.10 8.27 22.26 0.18 -2.92 15
15 C -0.11 -3.24 9.83 22.29 0.22 -3.02 15
16 C -0.05 -1.46 6.32 22.32 0.14 -1.32 15
17 Cl -0.07 -1.82 28.96 -2.72 -0.08 -1.90 15
18 C -0.12 -3.81 9.83 22.29 0.22 -3.60 15
19 C -0.11 -4.19 8.88 22.27 0.20 -3.99 15
20 H 0.07 2.35 8.14 -2.39 -0.02 2.33 15
21 H 0.06 2.29 6.45 -2.39 -0.02 2.27 15
22 H 0.01 0.33 7.03 -2.38 -0.02 0.31 15
23 H 0.32 12.85 4.32 -89.70 -0.39 12.47 15
24 H 0.27 14.99 8.31 -92.71 -0.77 14.21 15
25 H 0.15 4.47 7.40 -2.91 -0.02 4.45 15
26 H 0.15 3.39 8.06 -2.91 -0.02 3.37 15
27 H 0.14 3.93 8.06 -2.91 -0.02 3.90 15
28 H 0.12 5.03 6.43 -2.91 -0.02 5.02 15
Total: -1.00 -58.07 243.93 2.56 -55.51
By element:
Atomic # 1 Polarization: 20.60 SS G_CDS: 0.73 Total: 21.33 kcal
Atomic # 6 Polarization: -34.61 SS G_CDS: 2.87 Total: -31.75 kcal
Atomic # 7 Polarization: -83.38 SS G_CDS: -2.64 Total: -86.01 kcal
Atomic # 14 Polarization: 41.14 SS G_CDS: 1.69 Total: 42.82 kcal
Atomic # 17 Polarization: -1.82 SS G_CDS: -0.08 Total: -1.90 kcal
Total: -58.07 2.56 -55.51 kcal
The number of atoms in the molecule is 28
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000259483418.mol2 28
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 62.573 kcal
(2) G-P(sol) polarization free energy of solvation -58.070 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.502 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.561 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.509 kcal
(6) G-S(sol) free energy of system = (1) + (5) 7.064 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.17 seconds