Wall clock time and date at job start Mon Mar 30 2020 02:45:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46910 * 110.99712 * 2 1 4 4 H 1.09001 * 109.46912 * 185.64770 * 3 2 1 5 5 C 1.50700 * 109.46977 * 305.64980 * 3 2 1 6 6 H 1.07999 * 119.99770 * 120.00444 * 5 3 2 7 7 C 1.37879 * 120.00096 * 299.99470 * 5 3 2 8 8 N 1.31508 * 119.99816 * 180.02562 * 7 5 3 9 9 Si 1.86803 * 119.99697 * 0.02562 * 7 5 3 10 10 H 1.48498 * 109.47120 * 89.99729 * 9 7 5 11 11 H 1.48498 * 109.46702 * 209.99379 * 9 7 5 12 12 H 1.48498 * 109.47223 * 329.99462 * 9 7 5 13 13 C 1.50699 * 109.46672 * 65.64806 * 3 2 1 14 14 C 1.38246 * 119.99004 * 29.97392 * 13 3 2 15 15 C 1.38207 * 120.01073 * 179.97438 * 14 13 3 16 16 C 1.38354 * 119.99150 * 0.02562 * 15 14 13 17 17 Cl 1.73598 * 120.01245 * 180.02562 * 16 15 14 18 18 C 1.38348 * 119.97088 * 0.28236 * 16 15 14 19 19 C 1.38211 * 119.98644 * 359.39933 * 18 16 15 20 20 H 1.08997 * 109.46782 * 185.10986 * 1 2 3 21 21 H 1.08996 * 109.47164 * 305.11184 * 1 2 3 22 22 H 1.09004 * 109.47371 * 65.11404 * 1 2 3 23 23 H 1.00897 * 111.00397 * 236.05239 * 2 1 3 24 24 H 0.96999 * 120.00048 * 180.02562 * 8 7 5 25 25 H 1.08002 * 119.99009 * 359.97438 * 14 13 3 26 26 H 1.08003 * 120.00384 * 180.02562 * 15 14 13 27 27 H 1.08001 * 120.00738 * 179.71871 * 18 16 15 28 28 H 1.07998 * 119.99735 * 180.32375 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 1 3.0804 1.3443 -0.1011 5 6 1.4023 2.1372 -1.1546 6 1 0.8181 3.0265 -0.9695 7 6 1.6056 1.7025 -2.4471 8 7 1.0884 2.3710 -3.4546 9 14 2.6156 0.1640 -2.7671 10 1 1.7224 -1.0223 -2.7725 11 1 3.2914 0.2808 -4.0842 12 1 3.6358 0.0106 -1.6990 13 6 1.6284 2.0503 1.2944 14 6 1.4854 1.3044 2.4496 15 6 1.1494 1.9266 3.6370 16 6 0.9555 3.2961 3.6696 17 17 0.5340 4.0782 5.1610 18 6 1.0925 4.0412 2.5119 19 6 1.4350 3.4188 1.3264 20 1 -0.3633 -1.0236 0.0915 21 1 -0.3633 0.5911 0.8406 22 1 -0.3634 0.4325 -0.9323 23 1 1.8307 -0.5260 -0.7814 24 1 1.2310 2.0650 -4.3640 25 1 1.6364 0.2353 2.4239 26 1 1.0381 1.3438 4.5395 27 1 0.9368 5.1096 2.5357 28 1 1.5471 4.0010 0.4237 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259483418.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:55 Heat of formation + Delta-G solvation = 7.063518 kcal Electronic energy + Delta-G solvation = -13308.726191 eV Core-core repulsion = 10963.817736 eV Total energy + Delta-G solvation = -2344.908455 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.062 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.47169 -37.90072 -36.91590 -34.20205 -32.12234 -31.62765 -28.85856 -26.14799 -24.29482 -23.48868 -21.38457 -18.78494 -18.04349 -17.47897 -16.26049 -16.08773 -15.66254 -15.19263 -14.86491 -14.34664 -14.21689 -14.06552 -13.66985 -12.99733 -12.73787 -12.72601 -12.33867 -12.27765 -11.87485 -11.80570 -11.67934 -11.39403 -10.86552 -9.82810 -9.34913 -9.18775 -8.35882 -6.42066 0.34175 0.49861 1.22595 1.24415 1.32529 1.39424 2.23307 2.80869 2.99714 3.61540 4.04489 4.09361 4.19841 4.59044 4.63516 4.67671 4.87952 4.90500 5.11214 5.15659 5.25136 5.37932 5.40722 5.48658 5.81636 5.95431 6.05240 6.45296 6.48637 6.65427 7.23313 8.79499 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.051079 B = 0.007576 C = 0.007030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 548.033887 B = 3694.946442 C = 3981.737264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 N -0.682 5.682 3 C 0.203 3.797 4 H 0.052 0.948 5 C -0.537 4.537 6 H 0.049 0.951 7 C 0.021 3.979 8 N -0.938 5.938 9 Si 0.923 3.077 10 H -0.260 1.260 11 H -0.295 1.295 12 H -0.240 1.240 13 C -0.054 4.054 14 C -0.095 4.095 15 C -0.114 4.114 16 C -0.050 4.050 17 Cl -0.073 7.073 18 C -0.119 4.119 19 C -0.109 4.109 20 H 0.072 0.928 21 H 0.060 0.940 22 H 0.007 0.993 23 H 0.316 0.684 24 H 0.266 0.734 25 H 0.146 0.854 26 H 0.152 0.848 27 H 0.140 0.860 28 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.731 -2.388 13.109 13.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 N -0.315 5.315 3 C 0.095 3.905 4 H 0.069 0.931 5 C -0.576 4.576 6 H 0.067 0.933 7 C -0.178 4.178 8 N -0.577 5.577 9 Si 0.748 3.252 10 H -0.185 1.185 11 H -0.222 1.222 12 H -0.164 1.164 13 C -0.055 4.055 14 C -0.113 4.113 15 C -0.133 4.133 16 C -0.076 4.076 17 Cl -0.045 7.045 18 C -0.137 4.137 19 C -0.128 4.128 20 H 0.091 0.909 21 H 0.079 0.921 22 H 0.026 0.974 23 H 0.136 0.864 24 H 0.075 0.925 25 H 0.164 0.836 26 H 0.170 0.830 27 H 0.158 0.842 28 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 0.728 -2.392 13.749 13.975 hybrid contribution 0.022 0.127 -1.783 1.788 sum 0.750 -2.265 11.966 12.202 Atomic orbital electron populations 1.21959 0.88239 1.00655 1.00022 1.61210 1.08568 1.14855 1.46899 1.18495 0.95551 0.86007 0.90466 0.93083 1.21852 1.32740 1.12074 0.90950 0.93318 1.25784 0.96067 0.99971 0.95996 1.70028 1.46415 1.41642 0.99651 0.86181 0.80501 0.80399 0.78093 1.18515 1.22228 1.16387 1.20074 0.96646 0.93598 0.95170 1.21187 0.98472 1.01122 0.90561 1.21233 1.00455 0.92345 0.99254 1.20939 1.05794 0.93542 0.87359 1.98330 1.92030 1.81019 1.33073 1.21112 1.01019 1.00682 0.90905 1.21182 0.99056 0.95091 0.97430 0.90897 0.92145 0.97422 0.86388 0.92481 0.83593 0.83019 0.84224 0.86352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.59 9.88 127.69 1.26 2.85 15 2 N -0.68 -27.44 5.62 -522.46 -2.94 -30.38 15 3 C 0.20 8.95 2.42 43.42 0.11 9.06 15 4 H 0.05 2.32 7.20 -2.39 -0.02 2.30 15 5 C -0.54 -28.38 7.05 25.60 0.18 -28.20 15 6 H 0.05 2.86 6.28 -2.91 -0.02 2.84 15 7 C 0.02 1.15 5.32 84.66 0.45 1.60 15 8 N -0.94 -55.93 13.96 21.45 0.30 -55.63 15 9 Si 0.92 41.14 24.59 68.60 1.69 42.82 15 10 H -0.26 -10.91 7.05 99.48 0.70 -10.21 15 11 H -0.29 -13.38 7.11 99.48 0.71 -12.68 15 12 H -0.24 -9.90 6.53 99.48 0.65 -9.26 15 13 C -0.05 -2.12 4.65 -19.86 -0.09 -2.21 15 14 C -0.10 -3.10 8.27 22.26 0.18 -2.92 15 15 C -0.11 -3.24 9.83 22.29 0.22 -3.02 15 16 C -0.05 -1.46 6.32 22.32 0.14 -1.32 15 17 Cl -0.07 -1.82 28.96 -2.72 -0.08 -1.90 15 18 C -0.12 -3.81 9.83 22.29 0.22 -3.60 15 19 C -0.11 -4.19 8.88 22.27 0.20 -3.99 15 20 H 0.07 2.35 8.14 -2.39 -0.02 2.33 15 21 H 0.06 2.29 6.45 -2.39 -0.02 2.27 15 22 H 0.01 0.33 7.03 -2.38 -0.02 0.31 15 23 H 0.32 12.85 4.32 -89.70 -0.39 12.47 15 24 H 0.27 14.99 8.31 -92.71 -0.77 14.21 15 25 H 0.15 4.47 7.40 -2.91 -0.02 4.45 15 26 H 0.15 3.39 8.06 -2.91 -0.02 3.37 15 27 H 0.14 3.93 8.06 -2.91 -0.02 3.90 15 28 H 0.12 5.03 6.43 -2.91 -0.02 5.02 15 Total: -1.00 -58.07 243.93 2.56 -55.51 By element: Atomic # 1 Polarization: 20.60 SS G_CDS: 0.73 Total: 21.33 kcal Atomic # 6 Polarization: -34.61 SS G_CDS: 2.87 Total: -31.75 kcal Atomic # 7 Polarization: -83.38 SS G_CDS: -2.64 Total: -86.01 kcal Atomic # 14 Polarization: 41.14 SS G_CDS: 1.69 Total: 42.82 kcal Atomic # 17 Polarization: -1.82 SS G_CDS: -0.08 Total: -1.90 kcal Total: -58.07 2.56 -55.51 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259483418.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.573 kcal (2) G-P(sol) polarization free energy of solvation -58.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.509 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds