Wall clock time and date at job start Mon Mar 30 2020 02:45:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46901 * 111.00000 * 2 1 4 4 H 1.08994 * 109.47363 * 323.58171 * 3 2 1 5 5 C 1.50697 * 109.47536 * 203.57514 * 3 2 1 6 6 H 1.07996 * 120.00412 * 239.73030 * 5 3 2 7 7 C 1.37877 * 119.99446 * 60.00003 * 5 3 2 8 8 N 1.31510 * 120.00255 * 359.72808 * 7 5 3 9 9 Si 1.86807 * 119.99702 * 179.72719 * 7 5 3 10 10 H 1.48497 * 109.46945 * 90.00132 * 9 7 5 11 11 H 1.48504 * 109.46918 * 210.00080 * 9 7 5 12 12 H 1.48492 * 109.47178 * 329.99808 * 9 7 5 13 13 C 1.50707 * 109.46998 * 83.57639 * 3 2 1 14 14 C 1.38241 * 119.98734 * 46.14077 * 13 3 2 15 15 C 1.38210 * 120.01282 * 179.72884 * 14 13 3 16 16 C 1.38349 * 119.98630 * 0.53787 * 15 14 13 17 17 Cl 1.73601 * 120.01109 * 179.75134 * 16 15 14 18 18 C 1.38352 * 119.97300 * 359.73809 * 16 15 14 19 19 C 1.38213 * 119.98626 * 359.97438 * 18 16 15 20 20 H 1.08997 * 109.46935 * 184.62857 * 1 2 3 21 21 H 1.09006 * 109.47102 * 304.62838 * 1 2 3 22 22 H 1.08998 * 109.47318 * 64.62830 * 1 2 3 23 23 H 1.00897 * 111.00102 * 123.95655 * 2 1 3 24 24 H 0.97000 * 119.99968 * 180.02562 * 8 7 5 25 25 H 1.08004 * 119.99028 * 359.97438 * 14 13 3 26 26 H 1.08003 * 120.00827 * 180.27179 * 15 14 13 27 27 H 1.08004 * 120.00380 * 179.97438 * 18 16 15 28 28 H 1.07999 * 119.99272 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 1 1.3537 2.0070 -0.6101 5 6 3.3912 1.3738 -0.5682 6 1 4.2177 1.7255 0.0313 7 6 3.6120 0.9323 -1.8556 8 7 2.6055 0.5040 -2.5857 9 14 5.3411 0.9424 -2.5627 10 1 6.0033 -0.3540 -2.2694 11 1 5.2735 1.1424 -4.0326 12 1 6.1207 2.0467 -1.9482 13 6 2.0270 1.8974 1.4120 14 6 2.5333 1.1119 2.4307 15 6 2.5677 1.5958 3.7248 16 6 2.0851 2.8623 4.0025 17 17 2.1221 3.4683 5.6289 18 6 1.5733 3.6458 2.9835 19 6 1.5449 3.1630 1.6887 20 1 -0.3633 -1.0243 0.0829 21 1 -0.3633 0.5840 0.8457 22 1 -0.3634 0.4403 -0.9285 23 1 1.8306 -0.5261 0.7813 24 1 2.7610 0.1930 -3.4912 25 1 2.9056 0.1214 2.2145 26 1 2.9673 0.9837 4.5199 27 1 1.1961 4.6344 3.1998 28 1 1.1458 3.7747 0.8931 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259483422.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:56 Heat of formation + Delta-G solvation = 17.370584 kcal Electronic energy + Delta-G solvation = -13116.862536 eV Core-core repulsion = 10772.401029 eV Total energy + Delta-G solvation = -2344.461508 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.062 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -39.00911 -36.38756 -35.05562 -32.06068 -30.63518 -30.24164 -26.83889 -23.83439 -22.88580 -22.00952 -20.01825 -16.83245 -16.53188 -15.11510 -14.86732 -14.35827 -14.04907 -13.28308 -13.12684 -12.90645 -12.79525 -12.17324 -11.72543 -11.44986 -11.22976 -10.95514 -10.86861 -10.67184 -10.59516 -10.33552 -9.78013 -9.27142 -8.59198 -8.44336 -7.95791 -6.96669 -5.91685 -4.05693 1.68747 1.75546 2.43067 3.32967 3.39893 3.42993 4.15659 4.48035 5.20888 5.25817 5.27665 5.69220 5.78436 5.89936 5.93875 6.18463 6.26817 6.36475 6.37803 6.63767 6.75671 6.85473 6.92863 7.32827 7.37042 7.89117 8.13866 8.53367 8.71454 9.07417 9.62716 11.13038 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.035736 B = 0.007482 C = 0.006719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 783.339588 B = 3741.358571 C = 4166.152403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 N -0.650 5.650 3 C 0.250 3.750 4 H 0.046 0.954 5 C -0.525 4.525 6 H 0.055 0.945 7 C 0.086 3.914 8 N -0.849 5.849 9 Si 0.886 3.114 10 H -0.280 1.280 11 H -0.287 1.287 12 H -0.275 1.275 13 C -0.061 4.061 14 C -0.107 4.107 15 C -0.113 4.113 16 C -0.057 4.057 17 Cl -0.095 7.095 18 C -0.113 4.113 19 C -0.112 4.112 20 H 0.043 0.957 21 H -0.004 1.004 22 H 0.057 0.943 23 H 0.313 0.687 24 H 0.256 0.744 25 H 0.130 0.870 26 H 0.123 0.877 27 H 0.123 0.877 28 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.546 2.825 10.022 10.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 N -0.279 5.279 3 C 0.143 3.857 4 H 0.064 0.936 5 C -0.564 4.564 6 H 0.073 0.927 7 C -0.121 4.121 8 N -0.484 5.484 9 Si 0.714 3.286 10 H -0.206 1.206 11 H -0.213 1.213 12 H -0.200 1.200 13 C -0.064 4.064 14 C -0.126 4.126 15 C -0.131 4.131 16 C -0.083 4.083 17 Cl -0.067 7.067 18 C -0.132 4.132 19 C -0.131 4.131 20 H 0.062 0.938 21 H 0.014 0.986 22 H 0.076 0.924 23 H 0.131 0.869 24 H 0.066 0.934 25 H 0.148 0.852 26 H 0.141 0.859 27 H 0.141 0.859 28 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -2.577 2.717 9.270 9.997 hybrid contribution 0.766 0.313 0.679 1.070 sum -1.811 3.029 9.949 10.556 Atomic orbital electron populations 1.22106 0.91531 0.98969 0.98951 1.60994 1.03844 1.15824 1.47245 1.18433 0.96956 0.85899 0.84462 0.93600 1.20822 0.91664 1.45483 0.98437 0.92679 1.24906 0.96210 0.94178 0.96760 1.70062 1.30019 1.39696 1.08608 0.86725 0.85364 0.78397 0.78163 1.20649 1.21323 1.20008 1.21733 0.91569 0.93435 0.99630 1.20994 0.99518 1.00793 0.91247 1.20958 1.00564 0.94118 0.97500 1.20736 1.06787 0.95934 0.84864 1.98317 1.97604 1.88181 1.22591 1.20955 1.00576 0.99411 0.92249 1.21108 1.00448 0.96308 0.95243 0.93807 0.98615 0.92393 0.86893 0.93367 0.85180 0.85886 0.85934 0.85584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.69 10.49 60.06 0.63 1.32 15 2 N -0.65 -14.75 5.89 -116.49 -0.69 -15.43 15 3 C 0.25 5.90 2.09 -70.01 -0.15 5.75 15 4 H 0.05 1.18 7.67 -51.93 -0.40 0.79 15 5 C -0.53 -13.88 8.67 -34.44 -0.30 -14.18 15 6 H 0.05 1.47 7.74 -52.49 -0.41 1.06 15 7 C 0.09 2.33 5.39 -17.82 -0.10 2.23 15 8 N -0.85 -23.87 12.76 55.43 0.71 -23.16 15 9 Si 0.89 20.86 29.54 -169.99 -5.02 15.84 15 10 H -0.28 -6.60 7.11 56.52 0.40 -6.20 15 11 H -0.29 -6.74 7.11 56.52 0.40 -6.34 15 12 H -0.28 -6.44 7.11 56.52 0.40 -6.04 15 13 C -0.06 -1.24 4.52 -104.62 -0.47 -1.71 15 14 C -0.11 -1.95 8.98 -39.59 -0.36 -2.31 15 15 C -0.11 -1.83 9.83 -39.55 -0.39 -2.22 15 16 C -0.06 -0.91 6.32 -39.50 -0.25 -1.16 15 17 Cl -0.10 -1.33 28.96 -51.86 -1.50 -2.83 15 18 C -0.11 -1.82 9.83 -39.55 -0.39 -2.21 15 19 C -0.11 -2.03 9.67 -39.59 -0.38 -2.41 15 20 H 0.04 0.78 8.14 -51.93 -0.42 0.35 15 21 H 0.00 -0.09 7.87 -51.93 -0.41 -0.49 15 22 H 0.06 1.21 8.14 -51.93 -0.42 0.79 15 23 H 0.31 6.58 6.76 -39.29 -0.27 6.31 15 24 H 0.26 6.93 8.31 -40.82 -0.34 6.59 15 25 H 0.13 2.31 6.86 -52.48 -0.36 1.95 15 26 H 0.12 1.71 8.06 -52.48 -0.42 1.29 15 27 H 0.12 1.69 8.06 -52.48 -0.42 1.26 15 28 H 0.13 2.15 7.99 -52.49 -0.42 1.73 15 LS Contribution 259.84 15.07 3.92 3.92 Total: -1.00 -27.67 259.84 -7.82 -35.49 By element: Atomic # 1 Polarization: 6.15 SS G_CDS: -3.08 Total: 3.06 kcal Atomic # 6 Polarization: -14.73 SS G_CDS: -2.15 Total: -16.88 kcal Atomic # 7 Polarization: -38.62 SS G_CDS: 0.02 Total: -38.60 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Atomic # 17 Polarization: -1.33 SS G_CDS: -1.50 Total: -2.83 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -27.67 -7.82 -35.49 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259483422.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.861 kcal (2) G-P(sol) polarization free energy of solvation -27.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.491 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds