Wall clock time and date at job start Mon Mar 30 2020 02:45:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46901 * 111.00000 * 2 1 4 4 H 1.08994 * 109.47363 * 323.58171 * 3 2 1 5 5 C 1.50697 * 109.47536 * 203.57514 * 3 2 1 6 6 H 1.07996 * 120.00412 * 239.73030 * 5 3 2 7 7 C 1.37877 * 119.99446 * 60.00003 * 5 3 2 8 8 N 1.31510 * 120.00255 * 359.72808 * 7 5 3 9 9 Si 1.86807 * 119.99702 * 179.72719 * 7 5 3 10 10 H 1.48497 * 109.46945 * 90.00132 * 9 7 5 11 11 H 1.48504 * 109.46918 * 210.00080 * 9 7 5 12 12 H 1.48492 * 109.47178 * 329.99808 * 9 7 5 13 13 C 1.50707 * 109.46998 * 83.57639 * 3 2 1 14 14 C 1.38241 * 119.98734 * 46.14077 * 13 3 2 15 15 C 1.38210 * 120.01282 * 179.72884 * 14 13 3 16 16 C 1.38349 * 119.98630 * 0.53787 * 15 14 13 17 17 Cl 1.73601 * 120.01109 * 179.75134 * 16 15 14 18 18 C 1.38352 * 119.97300 * 359.73809 * 16 15 14 19 19 C 1.38213 * 119.98626 * 359.97438 * 18 16 15 20 20 H 1.08997 * 109.46935 * 184.62857 * 1 2 3 21 21 H 1.09006 * 109.47102 * 304.62838 * 1 2 3 22 22 H 1.08998 * 109.47318 * 64.62830 * 1 2 3 23 23 H 1.00897 * 111.00102 * 123.95655 * 2 1 3 24 24 H 0.97000 * 119.99968 * 180.02562 * 8 7 5 25 25 H 1.08004 * 119.99028 * 359.97438 * 14 13 3 26 26 H 1.08003 * 120.00827 * 180.27179 * 15 14 13 27 27 H 1.08004 * 120.00380 * 179.97438 * 18 16 15 28 28 H 1.07999 * 119.99272 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 1 1.3537 2.0070 -0.6101 5 6 3.3912 1.3738 -0.5682 6 1 4.2177 1.7255 0.0313 7 6 3.6120 0.9323 -1.8556 8 7 2.6055 0.5040 -2.5857 9 14 5.3411 0.9424 -2.5627 10 1 6.0033 -0.3540 -2.2694 11 1 5.2735 1.1424 -4.0326 12 1 6.1207 2.0467 -1.9482 13 6 2.0270 1.8974 1.4120 14 6 2.5333 1.1119 2.4307 15 6 2.5677 1.5958 3.7248 16 6 2.0851 2.8623 4.0025 17 17 2.1221 3.4683 5.6289 18 6 1.5733 3.6458 2.9835 19 6 1.5449 3.1630 1.6887 20 1 -0.3633 -1.0243 0.0829 21 1 -0.3633 0.5840 0.8457 22 1 -0.3634 0.4403 -0.9285 23 1 1.8306 -0.5261 0.7813 24 1 2.7610 0.1930 -3.4912 25 1 2.9056 0.1214 2.2145 26 1 2.9673 0.9837 4.5199 27 1 1.1961 4.6344 3.1998 28 1 1.1458 3.7747 0.8931 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259483422.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:56 Heat of formation + Delta-G solvation = 1.324948 kcal Electronic energy + Delta-G solvation = -13117.558327 eV Core-core repulsion = 10772.401029 eV Total energy + Delta-G solvation = -2345.157299 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.062 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.42164 -37.70490 -36.63304 -34.05724 -31.99902 -31.72802 -28.62376 -25.65244 -24.44351 -23.41275 -21.62507 -18.55199 -18.15662 -16.69095 -16.39621 -16.11216 -15.55803 -14.89654 -14.63148 -14.31523 -14.23706 -13.78056 -13.48896 -13.10955 -12.80711 -12.60383 -12.39411 -12.30324 -12.19009 -11.67690 -11.57374 -11.16592 -10.50198 -9.92378 -9.39691 -8.69366 -7.94975 -6.15390 0.31066 0.41463 1.18714 1.45652 1.47528 1.55991 2.48457 2.79984 3.26314 3.91958 4.02095 4.09026 4.21076 4.51959 4.53601 4.67341 4.75232 4.87801 4.99246 5.12403 5.23046 5.30076 5.41695 5.76553 5.84451 5.93112 6.22395 6.63874 6.98185 7.17385 7.56377 9.08015 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.035736 B = 0.007482 C = 0.006719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 783.339588 B = 3741.358571 C = 4166.152403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 N -0.670 5.670 3 C 0.257 3.743 4 H 0.012 0.988 5 C -0.536 4.536 6 H 0.047 0.953 7 C 0.040 3.960 8 N -0.881 5.881 9 Si 0.945 3.055 10 H -0.278 1.278 11 H -0.286 1.286 12 H -0.272 1.272 13 C -0.086 4.086 14 C -0.113 4.113 15 C -0.107 4.107 16 C -0.056 4.056 17 Cl -0.071 7.071 18 C -0.107 4.107 19 C -0.122 4.122 20 H 0.065 0.935 21 H 0.007 0.993 22 H 0.038 0.962 23 H 0.322 0.678 24 H 0.255 0.745 25 H 0.129 0.871 26 H 0.149 0.851 27 H 0.149 0.851 28 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.136 3.149 11.820 12.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 N -0.300 5.300 3 C 0.149 3.851 4 H 0.030 0.970 5 C -0.575 4.575 6 H 0.065 0.935 7 C -0.164 4.164 8 N -0.517 5.517 9 Si 0.772 3.228 10 H -0.203 1.203 11 H -0.212 1.212 12 H -0.197 1.197 13 C -0.088 4.088 14 C -0.132 4.132 15 C -0.126 4.126 16 C -0.083 4.083 17 Cl -0.042 7.042 18 C -0.126 4.126 19 C -0.141 4.141 20 H 0.084 0.916 21 H 0.026 0.974 22 H 0.057 0.943 23 H 0.140 0.860 24 H 0.064 0.936 25 H 0.147 0.853 26 H 0.167 0.833 27 H 0.167 0.833 28 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -2.163 3.046 11.085 11.697 hybrid contribution 0.605 0.264 0.247 0.705 sum -1.558 3.309 11.332 11.908 Atomic orbital electron populations 1.22012 0.89943 1.00330 0.98390 1.60783 1.05517 1.15625 1.48074 1.18057 0.94822 0.86006 0.86208 0.96974 1.21129 0.92945 1.44785 0.98611 0.93516 1.25588 0.99450 0.94106 0.97234 1.70181 1.31725 1.40996 1.08757 0.85786 0.81369 0.78323 0.77349 1.20345 1.21157 1.19718 1.21421 0.94361 0.94851 0.98208 1.20997 0.99699 1.00687 0.91804 1.21176 0.99737 0.94500 0.97157 1.20898 1.05558 0.95771 0.86066 1.98331 1.97438 1.87851 1.20592 1.21170 0.99705 1.00429 0.91248 1.21173 1.00720 0.95736 0.96491 0.91634 0.97441 0.94306 0.85977 0.93588 0.85275 0.83323 0.83344 0.85527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.72 10.49 127.69 1.34 3.06 15 2 N -0.67 -30.76 5.89 -522.48 -3.08 -33.83 15 3 C 0.26 12.40 2.09 43.42 0.09 12.50 15 4 H 0.01 0.66 7.67 -2.39 -0.02 0.64 15 5 C -0.54 -28.79 8.67 25.60 0.22 -28.57 15 6 H 0.05 2.52 7.74 -2.91 -0.02 2.50 15 7 C 0.04 2.18 5.39 84.66 0.46 2.63 15 8 N -0.88 -50.49 12.76 21.45 0.27 -50.21 15 9 Si 0.95 43.24 29.54 68.60 2.03 45.27 15 10 H -0.28 -12.48 7.11 99.48 0.71 -11.78 15 11 H -0.29 -12.89 7.11 99.48 0.71 -12.18 15 12 H -0.27 -12.20 7.11 99.48 0.71 -11.50 15 13 C -0.09 -3.46 4.52 -19.86 -0.09 -3.55 15 14 C -0.11 -4.01 8.98 22.26 0.20 -3.81 15 15 C -0.11 -3.21 9.83 22.29 0.22 -2.99 15 16 C -0.06 -1.64 6.32 22.32 0.14 -1.50 15 17 Cl -0.07 -1.73 28.96 -2.72 -0.08 -1.81 15 18 C -0.11 -3.20 9.83 22.29 0.22 -2.98 15 19 C -0.12 -4.35 9.67 22.26 0.22 -4.14 15 20 H 0.06 2.27 8.14 -2.39 -0.02 2.25 15 21 H 0.01 0.27 7.87 -2.38 -0.02 0.25 15 22 H 0.04 1.66 8.14 -2.39 -0.02 1.64 15 23 H 0.32 13.54 6.76 -89.70 -0.61 12.93 15 24 H 0.26 14.03 8.31 -92.71 -0.77 13.26 15 25 H 0.13 4.50 6.86 -2.91 -0.02 4.48 15 26 H 0.15 3.63 8.06 -2.91 -0.02 3.61 15 27 H 0.15 3.61 8.06 -2.91 -0.02 3.59 15 28 H 0.13 4.36 7.99 -2.91 -0.02 4.34 15 Total: -1.00 -58.60 259.84 2.71 -55.89 By element: Atomic # 1 Polarization: 13.49 SS G_CDS: 0.56 Total: 14.05 kcal Atomic # 6 Polarization: -32.36 SS G_CDS: 3.01 Total: -29.35 kcal Atomic # 7 Polarization: -81.24 SS G_CDS: -2.80 Total: -84.04 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 2.03 Total: 45.27 kcal Atomic # 17 Polarization: -1.73 SS G_CDS: -0.08 Total: -1.81 kcal Total: -58.60 2.71 -55.89 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259483422.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.215 kcal (2) G-P(sol) polarization free energy of solvation -58.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.890 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds