Wall clock time and date at job start Mon Mar 30 2020 02:43:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08993 * 109.47636 * 2 1 4 4 C 1.50700 * 109.46921 * 239.99987 * 2 1 3 5 5 H 1.08001 * 119.99952 * 239.99740 * 4 2 1 6 6 C 1.37882 * 120.00124 * 60.00270 * 4 2 1 7 7 N 1.31517 * 119.99483 * 359.97438 * 6 4 2 8 8 Si 1.86796 * 120.00302 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.46723 * 59.99621 * 8 6 4 10 10 H 1.48498 * 109.47338 * 179.97438 * 8 6 4 11 11 H 1.48500 * 109.46838 * 300.00167 * 8 6 4 12 12 C 1.50704 * 109.47332 * 120.00462 * 2 1 3 13 13 C 1.38131 * 120.03229 * 65.28542 * 12 2 1 14 14 C 1.38359 * 120.06112 * 179.97438 * 13 12 2 15 15 Cl 1.73591 * 119.93965 * 180.02562 * 14 13 12 16 16 C 1.38408 * 120.12359 * 359.74953 * 14 13 12 17 17 C 1.38092 * 120.06073 * 0.50608 * 16 14 13 18 18 C 1.38879 * 120.02977 * 245.26687 * 12 2 1 19 19 N 1.39745 * 120.06125 * 359.97438 * 18 12 2 20 20 H 1.09000 * 109.47448 * 180.02562 * 1 2 3 21 21 H 1.09003 * 109.46644 * 299.99494 * 1 2 3 22 22 H 1.08992 * 109.47146 * 59.99919 * 1 2 3 23 23 H 0.96997 * 119.99633 * 180.02562 * 7 6 4 24 24 H 1.08000 * 119.96878 * 0.02562 * 13 12 2 25 25 H 1.07997 * 119.96932 * 180.25137 * 16 14 13 26 26 H 1.07998 * 120.02972 * 179.76962 * 17 16 14 27 27 H 0.96995 * 119.99863 * 173.71442 * 19 18 12 28 28 H 0.97004 * 119.99840 * 353.72341 * 19 18 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6992 -0.2393 -2.4828 7 7 0.9427 0.8297 -2.6034 8 14 2.3223 -1.1195 -4.0080 9 1 1.8279 -2.5197 -4.0082 10 1 1.8268 -0.4198 -5.2205 11 1 3.8073 -1.1189 -4.0078 12 6 2.0324 -0.7105 1.2304 13 6 1.7914 -2.0605 1.3960 14 6 2.2529 -2.7136 2.5251 15 17 1.9489 -4.4104 2.7296 16 6 2.9613 -2.0177 3.4892 17 6 3.2005 -0.6668 3.3314 18 6 2.7383 -0.0086 2.1987 19 7 2.9843 1.3570 2.0335 20 1 -0.3634 -1.0276 0.0005 21 1 -0.3633 0.5138 0.8901 22 1 -0.3633 0.5138 -0.8899 23 1 0.7081 1.1609 -3.4843 24 1 1.2431 -2.6070 0.6429 25 1 3.3239 -2.5307 4.3676 26 1 3.7502 -0.1235 4.0858 27 1 3.3963 1.8657 2.7493 28 1 2.7430 1.7963 1.2029 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260355872.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:39 Heat of formation + Delta-G solvation = -11.118010 kcal Electronic energy + Delta-G solvation = -13218.587156 eV Core-core repulsion = 10872.890290 eV Total energy + Delta-G solvation = -2345.696866 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.062 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.49690 -37.40736 -36.12013 -34.99135 -33.24857 -30.25379 -28.88055 -27.17591 -24.55639 -22.87672 -21.26110 -18.49878 -18.01999 -17.63319 -16.85685 -16.24631 -15.14489 -14.86854 -14.59972 -14.43060 -14.32283 -13.44865 -13.11007 -12.93736 -12.82422 -12.65976 -12.63532 -12.20183 -11.99693 -11.85268 -11.11432 -10.98100 -10.92725 -10.43520 -9.54680 -8.22860 -8.04551 -6.20326 0.61468 0.64295 1.42203 1.43266 1.45603 1.50557 2.43993 2.99423 3.13711 3.23289 4.09862 4.15570 4.51146 4.65905 4.83901 4.86887 5.03001 5.23904 5.32829 5.34260 5.49041 5.53663 5.66458 5.95381 6.01214 6.09666 6.40137 6.68158 6.87004 7.14293 7.47063 8.95245 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.025906 B = 0.009424 C = 0.007740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1080.568252 B = 2970.385834 C = 3616.577989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.085 3.915 3 H 0.021 0.979 4 C -0.522 4.522 5 H 0.046 0.954 6 C 0.019 3.981 7 N -0.913 5.913 8 Si 0.946 3.054 9 H -0.275 1.275 10 H -0.283 1.283 11 H -0.274 1.274 12 C -0.129 4.129 13 C -0.071 4.071 14 C -0.103 4.103 15 Cl -0.090 7.090 16 C -0.077 4.077 17 C -0.187 4.187 18 C 0.205 3.795 19 N -0.868 5.868 20 H 0.024 0.976 21 H 0.023 0.977 22 H 0.060 0.940 23 H 0.261 0.739 24 H 0.109 0.891 25 H 0.152 0.848 26 H 0.156 0.844 27 H 0.407 0.593 28 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.678 -2.198 10.988 11.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.066 3.934 3 H 0.039 0.961 4 C -0.560 4.560 5 H 0.065 0.935 6 C -0.180 4.180 7 N -0.552 5.552 8 Si 0.772 3.228 9 H -0.201 1.201 10 H -0.208 1.208 11 H -0.200 1.200 12 C -0.134 4.134 13 C -0.091 4.091 14 C -0.131 4.131 15 Cl -0.062 7.062 16 C -0.096 4.096 17 C -0.210 4.210 18 C 0.099 3.901 19 N -0.410 5.410 20 H 0.043 0.957 21 H 0.042 0.958 22 H 0.079 0.921 23 H 0.070 0.930 24 H 0.127 0.873 25 H 0.170 0.830 26 H 0.173 0.827 27 H 0.237 0.763 28 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges 3.568 -2.241 10.867 11.655 hybrid contribution 0.083 -0.196 -1.275 1.292 sum 3.651 -2.437 9.592 10.548 Atomic orbital electron populations 1.21643 0.97948 0.98846 0.99550 1.17509 0.92500 0.94295 0.89054 0.96068 1.21417 1.30915 1.12244 0.91389 0.93526 1.25607 0.95310 0.95699 1.01392 1.69971 1.37425 1.23879 1.23966 0.85795 0.78747 0.78863 0.79372 1.20070 1.20798 1.19965 1.19924 1.01755 0.94053 0.97623 1.20606 0.98898 0.93888 0.95682 1.20676 1.08548 0.84881 0.99008 1.98291 1.95334 1.15183 1.97345 1.20884 0.96923 0.93688 0.98126 1.20726 1.07095 0.94392 0.98790 1.17948 0.92898 0.85735 0.93546 1.42632 1.70821 1.06099 1.21408 0.95712 0.95824 0.92103 0.92959 0.87266 0.83029 0.82670 0.76308 0.76959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.90 8.83 71.98 0.64 -5.26 15 2 C 0.09 4.14 2.43 -12.29 -0.03 4.11 15 3 H 0.02 1.07 5.68 -2.39 -0.01 1.06 15 4 C -0.52 -28.25 8.10 25.60 0.21 -28.04 15 5 H 0.05 2.57 7.45 -2.91 -0.02 2.54 15 6 C 0.02 1.02 5.30 84.66 0.45 1.47 15 7 N -0.91 -51.04 11.32 21.45 0.24 -50.80 15 8 Si 0.95 43.45 29.54 68.60 2.03 45.48 15 9 H -0.28 -12.51 7.11 99.48 0.71 -11.80 15 10 H -0.28 -12.66 7.11 99.48 0.71 -11.96 15 11 H -0.27 -12.38 7.11 99.48 0.71 -11.67 15 12 C -0.13 -5.44 4.77 -19.73 -0.09 -5.53 15 13 C -0.07 -2.91 8.37 22.27 0.19 -2.72 15 14 C -0.10 -3.54 6.32 22.34 0.14 -3.40 15 15 Cl -0.09 -2.78 28.95 -2.72 -0.08 -2.86 15 16 C -0.08 -2.24 9.82 22.28 0.22 -2.02 15 17 C -0.19 -5.35 9.90 22.40 0.22 -5.12 15 18 C 0.20 7.15 6.74 38.20 0.26 7.40 15 19 N -0.87 -25.84 9.01 -51.34 -0.46 -26.31 15 20 H 0.02 1.16 7.72 -2.39 -0.02 1.14 15 21 H 0.02 1.01 8.14 -2.39 -0.02 0.99 15 22 H 0.06 3.22 6.07 -2.39 -0.01 3.20 15 23 H 0.26 14.00 8.31 -92.71 -0.77 13.23 15 24 H 0.11 4.81 7.75 -2.91 -0.02 4.79 15 25 H 0.15 3.41 8.06 -2.91 -0.02 3.39 15 26 H 0.16 3.24 8.06 -2.91 -0.02 3.22 15 27 H 0.41 8.83 8.85 -92.71 -0.82 8.01 15 28 H 0.40 13.24 6.48 -92.71 -0.60 12.64 15 Total: -1.00 -58.52 253.27 3.69 -54.82 By element: Atomic # 1 Polarization: 19.02 SS G_CDS: -0.23 Total: 18.79 kcal Atomic # 6 Polarization: -41.32 SS G_CDS: 2.19 Total: -39.12 kcal Atomic # 7 Polarization: -76.89 SS G_CDS: -0.22 Total: -77.11 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 2.03 Total: 45.48 kcal Atomic # 17 Polarization: -2.78 SS G_CDS: -0.08 Total: -2.86 kcal Total: -58.52 3.69 -54.82 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260355872.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.705 kcal (2) G-P(sol) polarization free energy of solvation -58.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds