Wall clock time and date at job start Mon Mar 30 2020 02:43:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08992 * 109.47138 * 2 1 4 4 C 1.50695 * 109.47381 * 239.99764 * 2 1 3 5 5 H 1.08004 * 120.00546 * 240.27913 * 4 2 1 6 6 C 1.37885 * 119.99721 * 60.00164 * 4 2 1 7 7 N 1.31514 * 120.00035 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99853 * 179.97438 * 6 4 2 9 9 H 1.48494 * 109.47228 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.46793 * 120.00131 * 8 6 4 11 11 H 1.48500 * 109.47000 * 240.00224 * 8 6 4 12 12 C 1.50707 * 109.46672 * 120.00013 * 2 1 3 13 13 C 1.38293 * 119.95201 * 60.00680 * 12 2 1 14 14 C 1.38271 * 120.15345 * 179.97438 * 13 12 2 15 15 C 1.38215 * 120.06332 * 359.97438 * 14 13 12 16 16 Cl 1.73596 * 120.04789 * 179.97438 * 15 14 13 17 17 C 1.38991 * 119.90549 * 0.02562 * 15 14 13 18 18 N 1.39746 * 120.07916 * 180.02562 * 17 15 14 19 19 C 1.38114 * 119.94956 * 239.72082 * 12 2 1 20 20 H 1.08996 * 109.46841 * 60.00367 * 1 2 3 21 21 H 1.09005 * 109.47057 * 179.97438 * 1 2 3 22 22 H 1.08996 * 109.47481 * 299.99642 * 1 2 3 23 23 H 0.97000 * 119.99706 * 179.97438 * 7 6 4 24 24 H 1.07999 * 119.92480 * 359.94639 * 13 12 2 25 25 H 1.08001 * 119.97066 * 179.97438 * 14 13 12 26 26 H 0.97005 * 119.99826 * 359.97438 * 18 17 15 27 27 H 0.96993 * 119.99896 * 180.02562 * 18 17 15 28 28 H 1.07999 * 120.03580 * 0.02647 * 19 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6496 -1.5912 -1.1313 6 6 1.6993 -0.2393 -2.4827 7 7 0.9436 0.8302 -2.6034 8 14 2.3226 -1.1195 -4.0079 9 1 3.1475 -2.2863 -3.6038 10 1 1.1679 -1.5866 -4.8165 11 1 3.1475 -0.1857 -4.8160 12 6 2.0323 -0.7105 1.2306 13 6 1.6976 -2.0345 1.4483 14 6 2.1565 -2.6905 2.5756 15 6 2.9522 -2.0244 3.4886 16 17 3.5276 -2.8483 4.9042 17 6 3.2901 -0.6937 3.2723 18 7 4.0948 -0.0168 4.1927 19 6 2.8309 -0.0400 2.1361 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3634 0.5137 0.8900 23 1 0.7097 1.1618 -3.4844 24 1 1.0760 -2.5572 0.7365 25 1 1.8931 -3.7245 2.7430 26 1 4.4180 -0.4756 4.9840 27 1 4.3296 0.9119 4.0408 28 1 3.0951 0.9928 1.9629 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260368736.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:42 Heat of formation + Delta-G solvation = 0.130292 kcal Electronic energy + Delta-G solvation = -13025.700502 eV Core-core repulsion = 10680.491399 eV Total energy + Delta-G solvation = -2345.209103 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.062 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -39.00861 -36.17778 -34.94267 -33.40254 -31.22902 -28.90142 -27.45573 -25.13258 -22.53096 -21.98622 -19.60407 -16.73436 -16.59677 -16.06647 -15.36092 -14.58608 -13.88301 -13.38723 -13.32771 -13.01414 -12.48716 -11.76836 -11.43142 -11.27770 -11.16647 -10.91962 -10.86273 -10.45334 -10.38164 -10.08332 -9.88986 -9.47412 -8.98680 -8.39259 -7.92768 -7.07312 -6.02694 -4.09222 1.91899 2.13846 2.60971 3.28670 3.37049 3.41899 4.13586 4.35705 4.49529 5.27660 5.32099 5.78145 5.95273 6.11455 6.17449 6.48874 6.64102 6.83109 6.94497 7.06203 7.18126 7.34594 7.43138 7.70441 7.79825 7.95596 7.99055 8.08185 8.37237 8.93823 9.55534 11.03055 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.043441 B = 0.006854 C = 0.006595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 644.393019 B = 4084.319393 C = 4244.343081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.068 3.932 3 H 0.036 0.964 4 C -0.506 4.506 5 H 0.059 0.941 6 C 0.062 3.938 7 N -0.890 5.890 8 Si 0.892 3.108 9 H -0.272 1.272 10 H -0.284 1.284 11 H -0.284 1.284 12 C 0.021 3.979 13 C -0.153 4.153 14 C -0.071 4.071 15 C -0.137 4.137 16 Cl -0.101 7.101 17 C 0.221 3.779 18 N -0.880 5.880 19 C -0.196 4.196 20 H 0.086 0.914 21 H 0.030 0.970 22 H 0.009 0.991 23 H 0.260 0.740 24 H 0.128 0.872 25 H 0.121 0.879 26 H 0.394 0.606 27 H 0.397 0.603 28 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.286 -2.985 10.986 11.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.050 3.950 3 H 0.054 0.946 4 C -0.544 4.544 5 H 0.078 0.922 6 C -0.139 4.139 7 N -0.529 5.529 8 Si 0.720 3.280 9 H -0.197 1.197 10 H -0.210 1.210 11 H -0.211 1.211 12 C 0.020 3.980 13 C -0.173 4.173 14 C -0.091 4.091 15 C -0.168 4.168 16 Cl -0.073 7.073 17 C 0.117 3.883 18 N -0.421 5.421 19 C -0.219 4.219 20 H 0.104 0.896 21 H 0.049 0.951 22 H 0.028 0.972 23 H 0.070 0.930 24 H 0.146 0.854 25 H 0.139 0.861 26 H 0.223 0.777 27 H 0.225 0.775 28 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 3.232 -2.970 10.941 11.789 hybrid contribution 0.644 -0.331 -0.482 0.870 sum 3.876 -3.301 10.460 11.633 Atomic orbital electron populations 1.21781 0.97366 0.99478 1.00338 1.17955 0.93040 0.95519 0.88512 0.94639 1.21139 1.31279 1.12269 0.89695 0.92238 1.24957 0.95018 0.95010 0.98961 1.69895 1.36735 1.22914 1.23337 0.86520 0.78667 0.79767 0.83005 1.19680 1.21016 1.21056 1.20559 0.89814 0.93355 0.94262 1.20852 1.03916 0.95183 0.97358 1.20758 0.95857 0.99188 0.93250 1.20114 1.10750 0.92450 0.93449 1.98271 1.88800 1.78913 1.41305 1.17452 0.91152 0.89569 0.90142 1.42454 1.58250 1.15109 1.26292 1.20555 1.05762 1.00671 0.94921 0.89568 0.95083 0.97188 0.92996 0.85381 0.86116 0.77665 0.77509 0.85975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.11 8.78 37.16 0.33 -2.78 15 2 C 0.07 1.66 2.48 -92.92 -0.23 1.43 15 3 H 0.04 0.93 7.87 -51.93 -0.41 0.52 15 4 C -0.51 -13.48 8.24 -34.44 -0.28 -13.76 15 5 H 0.06 1.60 7.60 -52.48 -0.40 1.20 15 6 C 0.06 1.67 5.30 -17.82 -0.09 1.57 15 7 N -0.89 -24.79 11.32 55.43 0.63 -24.16 15 8 Si 0.89 20.94 29.54 -169.99 -5.02 15.92 15 9 H -0.27 -6.34 7.11 56.52 0.40 -5.94 15 10 H -0.28 -6.62 7.11 56.52 0.40 -6.22 15 11 H -0.28 -6.66 7.11 56.52 0.40 -6.26 15 12 C 0.02 0.45 4.73 -104.64 -0.50 -0.05 15 13 C -0.15 -3.01 8.70 -39.55 -0.34 -3.35 15 14 C -0.07 -1.24 9.82 -39.58 -0.39 -1.63 15 15 C -0.14 -2.30 6.34 -39.31 -0.25 -2.55 15 16 Cl -0.10 -1.44 27.60 -51.86 -1.43 -2.87 15 17 C 0.22 3.73 6.75 -83.73 -0.57 3.16 15 18 N -0.88 -11.53 9.05 32.44 0.29 -11.24 15 19 C -0.20 -3.72 9.52 -39.39 -0.37 -4.09 15 20 H 0.09 2.23 6.07 -51.93 -0.32 1.91 15 21 H 0.03 0.69 7.38 -51.93 -0.38 0.31 15 22 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 15 23 H 0.26 6.91 8.31 -40.82 -0.34 6.57 15 24 H 0.13 2.52 7.57 -52.49 -0.40 2.13 15 25 H 0.12 1.81 8.06 -52.49 -0.42 1.39 15 26 H 0.39 4.64 7.51 -40.82 -0.31 4.33 15 27 H 0.40 4.38 8.84 -40.82 -0.36 4.01 15 28 H 0.12 2.18 7.94 -52.49 -0.42 1.76 15 LS Contribution 254.78 15.07 3.84 3.84 Total: -1.00 -27.72 254.78 -7.36 -35.08 By element: Atomic # 1 Polarization: 8.44 SS G_CDS: -2.97 Total: 5.48 kcal Atomic # 6 Polarization: -19.35 SS G_CDS: -2.70 Total: -22.05 kcal Atomic # 7 Polarization: -36.32 SS G_CDS: 0.92 Total: -35.40 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Atomic # 17 Polarization: -1.44 SS G_CDS: -1.43 Total: -2.87 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -27.72 -7.36 -35.08 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260368736.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.210 kcal (2) G-P(sol) polarization free energy of solvation -27.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.080 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds