Wall clock time and date at job start Mon Mar 30 2020 02:43:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08992 * 109.47138 * 2 1 4 4 C 1.50695 * 109.47381 * 239.99764 * 2 1 3 5 5 H 1.08004 * 120.00546 * 240.27913 * 4 2 1 6 6 C 1.37885 * 119.99721 * 60.00164 * 4 2 1 7 7 N 1.31514 * 120.00035 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99853 * 179.97438 * 6 4 2 9 9 H 1.48494 * 109.47228 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.46793 * 120.00131 * 8 6 4 11 11 H 1.48500 * 109.47000 * 240.00224 * 8 6 4 12 12 C 1.50707 * 109.46672 * 120.00013 * 2 1 3 13 13 C 1.38293 * 119.95201 * 60.00680 * 12 2 1 14 14 C 1.38271 * 120.15345 * 179.97438 * 13 12 2 15 15 C 1.38215 * 120.06332 * 359.97438 * 14 13 12 16 16 Cl 1.73596 * 120.04789 * 179.97438 * 15 14 13 17 17 C 1.38991 * 119.90549 * 0.02562 * 15 14 13 18 18 N 1.39746 * 120.07916 * 180.02562 * 17 15 14 19 19 C 1.38114 * 119.94956 * 239.72082 * 12 2 1 20 20 H 1.08996 * 109.46841 * 60.00367 * 1 2 3 21 21 H 1.09005 * 109.47057 * 179.97438 * 1 2 3 22 22 H 1.08996 * 109.47481 * 299.99642 * 1 2 3 23 23 H 0.97000 * 119.99706 * 179.97438 * 7 6 4 24 24 H 1.07999 * 119.92480 * 359.94639 * 13 12 2 25 25 H 1.08001 * 119.97066 * 179.97438 * 14 13 12 26 26 H 0.97005 * 119.99826 * 359.97438 * 18 17 15 27 27 H 0.96993 * 119.99896 * 180.02562 * 18 17 15 28 28 H 1.07999 * 120.03580 * 0.02647 * 19 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6496 -1.5912 -1.1313 6 6 1.6993 -0.2393 -2.4827 7 7 0.9436 0.8302 -2.6034 8 14 2.3226 -1.1195 -4.0079 9 1 3.1475 -2.2863 -3.6038 10 1 1.1679 -1.5866 -4.8165 11 1 3.1475 -0.1857 -4.8160 12 6 2.0323 -0.7105 1.2306 13 6 1.6976 -2.0345 1.4483 14 6 2.1565 -2.6905 2.5756 15 6 2.9522 -2.0244 3.4886 16 17 3.5276 -2.8483 4.9042 17 6 3.2901 -0.6937 3.2723 18 7 4.0948 -0.0168 4.1927 19 6 2.8309 -0.0400 2.1361 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3634 0.5137 0.8900 23 1 0.7097 1.1618 -3.4844 24 1 1.0760 -2.5572 0.7365 25 1 1.8931 -3.7245 2.7430 26 1 4.4180 -0.4756 4.9840 27 1 4.3296 0.9119 4.0408 28 1 3.0951 0.9928 1.9629 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260368736.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:42 Heat of formation + Delta-G solvation = -15.565947 kcal Electronic energy + Delta-G solvation = -13026.381142 eV Core-core repulsion = 10680.491399 eV Total energy + Delta-G solvation = -2345.889743 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.062 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.43172 -37.51456 -36.47818 -34.97558 -33.02405 -30.43126 -28.91565 -27.17359 -24.19192 -23.39026 -21.26102 -18.39425 -17.96189 -17.65723 -16.87274 -16.39321 -15.36874 -14.94501 -14.71641 -14.52222 -14.21220 -13.51086 -13.12399 -12.94855 -12.82750 -12.58727 -12.37692 -12.18953 -12.03970 -11.68890 -11.37384 -11.27009 -10.89091 -10.44623 -9.41124 -8.37599 -8.07126 -6.20524 0.47854 0.72156 1.31320 1.42495 1.45329 1.56417 2.45309 2.96356 2.97800 3.21306 3.96376 4.28177 4.54525 4.66064 4.73037 4.93646 5.05452 5.08591 5.27229 5.32577 5.51219 5.56812 5.73588 5.94475 6.11524 6.15903 6.38231 6.53368 6.88163 6.97128 7.47155 8.97377 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.043441 B = 0.006854 C = 0.006595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 644.393019 B = 4084.319393 C = 4244.343081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.069 3.931 3 H 0.007 0.993 4 C -0.517 4.517 5 H 0.052 0.948 6 C 0.015 3.985 7 N -0.917 5.917 8 Si 0.953 3.047 9 H -0.269 1.269 10 H -0.280 1.280 11 H -0.282 1.282 12 C -0.003 4.003 13 C -0.170 4.170 14 C -0.063 4.063 15 C -0.142 4.142 16 Cl -0.073 7.073 17 C 0.229 3.771 18 N -0.864 5.864 19 C -0.208 4.208 20 H 0.060 0.940 21 H 0.034 0.966 22 H 0.025 0.975 23 H 0.261 0.739 24 H 0.119 0.881 25 H 0.146 0.854 26 H 0.404 0.596 27 H 0.409 0.591 28 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.227 -4.050 12.316 13.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.050 3.950 3 H 0.026 0.974 4 C -0.555 4.555 5 H 0.071 0.929 6 C -0.184 4.184 7 N -0.557 5.557 8 Si 0.779 3.221 9 H -0.193 1.193 10 H -0.205 1.205 11 H -0.208 1.208 12 C -0.004 4.004 13 C -0.190 4.190 14 C -0.082 4.082 15 C -0.173 4.173 16 Cl -0.044 7.044 17 C 0.122 3.878 18 N -0.405 5.405 19 C -0.231 4.231 20 H 0.078 0.922 21 H 0.053 0.947 22 H 0.044 0.956 23 H 0.070 0.930 24 H 0.137 0.863 25 H 0.164 0.836 26 H 0.235 0.765 27 H 0.239 0.761 28 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 4.195 -4.022 12.305 13.609 hybrid contribution 0.408 -0.007 -0.746 0.851 sum 4.603 -4.029 11.559 13.078 Atomic orbital electron populations 1.21621 0.97151 0.99454 0.99723 1.17800 0.93322 0.94120 0.89742 0.97448 1.21393 1.31079 1.12109 0.90969 0.92938 1.25684 0.95276 0.95709 1.01681 1.70015 1.37665 1.24063 1.23913 0.85578 0.78185 0.78726 0.79627 1.19305 1.20534 1.20782 1.20301 0.91879 0.94227 0.93970 1.20775 1.04941 0.94747 0.98520 1.20945 0.94921 1.00156 0.92161 1.20252 1.10152 0.92626 0.94271 1.98282 1.88377 1.78313 1.39457 1.17412 0.90773 0.89764 0.89830 1.42414 1.56803 1.15669 1.25637 1.20545 1.06001 1.00976 0.95575 0.92165 0.94696 0.95635 0.92953 0.86276 0.83642 0.76497 0.76136 0.85716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.87 8.78 71.98 0.63 -5.24 15 2 C 0.07 3.44 2.48 -12.29 -0.03 3.41 15 3 H 0.01 0.40 7.87 -2.39 -0.02 0.38 15 4 C -0.52 -28.12 8.24 25.60 0.21 -27.91 15 5 H 0.05 2.86 7.60 -2.91 -0.02 2.84 15 6 C 0.02 0.82 5.30 84.66 0.45 1.27 15 7 N -0.92 -52.15 11.32 21.45 0.24 -51.90 15 8 Si 0.95 43.28 29.54 68.60 2.03 45.30 15 9 H -0.27 -11.93 7.11 99.48 0.71 -11.23 15 10 H -0.28 -12.41 7.11 99.48 0.71 -11.71 15 11 H -0.28 -12.61 7.11 99.48 0.71 -11.90 15 12 C 0.00 -0.12 4.73 -19.88 -0.09 -0.22 15 13 C -0.17 -6.60 8.70 22.29 0.19 -6.40 15 14 C -0.06 -2.05 9.82 22.27 0.22 -1.83 15 15 C -0.14 -4.40 6.34 22.44 0.14 -4.26 15 16 Cl -0.07 -1.82 27.60 -2.72 -0.08 -1.90 15 17 C 0.23 7.23 6.75 38.22 0.26 7.49 15 18 N -0.86 -20.21 9.05 -51.29 -0.46 -20.67 15 19 C -0.21 -7.76 9.52 22.40 0.21 -7.54 15 20 H 0.06 3.20 6.07 -2.39 -0.01 3.19 15 21 H 0.03 1.59 7.38 -2.38 -0.02 1.57 15 22 H 0.02 1.09 8.14 -2.39 -0.02 1.07 15 23 H 0.26 14.11 8.31 -92.71 -0.77 13.34 15 24 H 0.12 4.74 7.57 -2.91 -0.02 4.71 15 25 H 0.15 3.94 8.06 -2.91 -0.02 3.92 15 26 H 0.40 8.15 7.51 -92.70 -0.70 7.45 15 27 H 0.41 7.93 8.84 -92.71 -0.82 7.11 15 28 H 0.12 4.45 7.94 -2.91 -0.02 4.42 15 Total: -1.00 -58.84 254.78 3.60 -55.24 By element: Atomic # 1 Polarization: 15.50 SS G_CDS: -0.33 Total: 15.18 kcal Atomic # 6 Polarization: -43.44 SS G_CDS: 2.19 Total: -41.24 kcal Atomic # 7 Polarization: -72.36 SS G_CDS: -0.22 Total: -72.58 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 2.03 Total: 45.30 kcal Atomic # 17 Polarization: -1.82 SS G_CDS: -0.08 Total: -1.90 kcal Total: -58.84 3.60 -55.24 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260368736.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.673 kcal (2) G-P(sol) polarization free energy of solvation -58.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.238 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds