Wall clock time and date at job start Mon Mar 30 2020 02:43:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09001 * 109.47084 * 2 1 4 4 C 1.50699 * 109.47378 * 120.00231 * 2 1 3 5 5 H 1.08002 * 119.99731 * 119.99321 * 4 2 1 6 6 C 1.37873 * 119.99716 * 299.99845 * 4 2 1 7 7 N 1.31510 * 120.00466 * 359.97438 * 6 4 2 8 8 Si 1.86811 * 119.99737 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.46870 * 90.00171 * 8 6 4 10 10 H 1.48503 * 109.47056 * 210.00028 * 8 6 4 11 11 H 1.48494 * 109.47002 * 330.00087 * 8 6 4 12 12 C 1.50705 * 109.46840 * 240.00175 * 2 1 3 13 13 C 1.38289 * 119.95398 * 299.99774 * 12 2 1 14 14 C 1.38274 * 120.15992 * 179.97438 * 13 12 2 15 15 C 1.38208 * 120.05680 * 0.28398 * 14 13 12 16 16 Cl 1.73604 * 120.04613 * 179.72394 * 15 14 13 17 17 C 1.38987 * 119.90835 * 359.44375 * 15 14 13 18 18 N 1.39751 * 120.07922 * 180.30163 * 17 15 14 19 19 C 1.38115 * 119.95468 * 119.97996 * 12 2 1 20 20 H 1.09004 * 109.47241 * 299.99560 * 1 2 3 21 21 H 1.08999 * 109.47487 * 59.99595 * 1 2 3 22 22 H 1.09001 * 109.47537 * 179.97438 * 1 2 3 23 23 H 0.96993 * 120.00300 * 179.97438 * 7 6 4 24 24 H 1.08000 * 119.92015 * 0.02562 * 13 12 2 25 25 H 1.08002 * 119.96836 * 179.97438 * 14 13 12 26 26 H 0.96998 * 119.99616 * 180.25518 * 18 17 15 27 27 H 0.96992 * 119.99947 * 0.25072 * 18 17 15 28 28 H 1.08006 * 120.02836 * 359.97438 * 19 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6532 -1.5886 1.1312 6 6 1.6993 -0.2394 2.4826 7 7 0.9436 0.8301 2.6034 8 14 2.3215 -1.1205 4.0079 9 1 3.6298 -0.5460 4.4123 10 1 1.3432 -0.9494 5.1120 11 1 2.4859 -2.5663 3.7118 12 6 2.0322 -0.7104 -1.2305 13 6 1.6975 -2.0344 -1.4484 14 6 2.1556 -2.6902 -2.5763 15 6 2.9549 -2.0253 -3.4870 16 17 3.5357 -2.8510 -4.8993 17 6 3.2881 -0.6930 -3.2735 18 7 4.0909 -0.0154 -4.1952 19 6 2.8258 -0.0382 -2.1393 20 1 -0.3634 0.5138 0.8900 21 1 -0.3634 0.5139 -0.8899 22 1 -0.3634 -1.0276 -0.0005 23 1 0.7090 1.1613 3.4844 24 1 1.0762 -2.5572 -0.7364 25 1 1.8927 -3.7243 -2.7432 26 1 4.3258 0.9133 -4.0431 27 1 4.4131 -0.4738 -4.9868 28 1 3.0860 0.9961 -1.9685 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260368739.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:43 Heat of formation + Delta-G solvation = -15.497630 kcal Electronic energy + Delta-G solvation = -13026.267155 eV Core-core repulsion = 10680.380375 eV Total energy + Delta-G solvation = -2345.886780 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.062 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.43298 -37.51436 -36.47801 -34.97588 -33.02471 -30.43097 -28.91601 -27.17267 -24.19158 -23.39051 -21.26116 -18.39173 -17.96179 -17.65511 -16.87143 -16.39502 -15.36798 -14.94442 -14.71926 -14.51970 -14.20721 -13.50968 -13.12275 -12.95153 -12.81942 -12.58649 -12.38376 -12.19940 -12.02856 -11.68849 -11.37578 -11.26842 -10.90076 -10.43989 -9.41208 -8.37665 -8.06864 -6.20414 0.47800 0.72105 1.31243 1.43865 1.45388 1.55342 2.45443 2.96357 2.97722 3.21551 3.96314 4.28166 4.54481 4.66037 4.73024 4.93593 5.05461 5.08630 5.27233 5.32500 5.51208 5.56800 5.73504 5.94423 6.11544 6.15896 6.38268 6.53330 6.88035 6.97114 7.47267 8.97484 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.043402 B = 0.006856 C = 0.006595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 644.981318 B = 4082.800689 C = 4244.641258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.069 3.931 3 H 0.007 0.993 4 C -0.519 4.519 5 H 0.052 0.948 6 C 0.015 3.985 7 N -0.917 5.917 8 Si 0.952 3.048 9 H -0.278 1.278 10 H -0.283 1.283 11 H -0.268 1.268 12 C -0.003 4.003 13 C -0.170 4.170 14 C -0.063 4.063 15 C -0.142 4.142 16 Cl -0.073 7.073 17 C 0.229 3.771 18 N -0.864 5.864 19 C -0.208 4.208 20 H 0.060 0.940 21 H 0.025 0.975 22 H 0.034 0.966 23 H 0.261 0.739 24 H 0.119 0.881 25 H 0.146 0.854 26 H 0.409 0.591 27 H 0.404 0.596 28 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.221 -4.055 -12.312 13.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.050 3.950 3 H 0.025 0.975 4 C -0.557 4.557 5 H 0.071 0.929 6 C -0.183 4.183 7 N -0.557 5.557 8 Si 0.778 3.222 9 H -0.204 1.204 10 H -0.209 1.209 11 H -0.193 1.193 12 C -0.004 4.004 13 C -0.190 4.190 14 C -0.082 4.082 15 C -0.173 4.173 16 Cl -0.044 7.044 17 C 0.122 3.878 18 N -0.405 5.405 19 C -0.231 4.231 20 H 0.078 0.922 21 H 0.044 0.956 22 H 0.053 0.947 23 H 0.071 0.929 24 H 0.137 0.863 25 H 0.164 0.836 26 H 0.239 0.761 27 H 0.235 0.765 28 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 4.184 -4.027 -12.299 13.601 hybrid contribution 0.426 -0.006 0.742 0.855 sum 4.610 -4.033 -11.557 13.080 Atomic orbital electron populations 1.21619 0.97140 0.99451 0.99721 1.17796 0.93328 0.94099 0.89738 0.97476 1.21360 1.31016 1.12298 0.90981 0.92936 1.25679 0.95266 0.95697 1.01672 1.70002 1.37603 1.24066 1.23981 0.85637 0.78003 0.79256 0.79270 1.20393 1.20865 1.19269 1.20299 0.91888 0.94222 0.93961 1.20774 1.04952 0.94776 0.98474 1.20944 0.94888 1.00168 0.92176 1.20251 1.10064 0.92579 0.94397 1.98283 1.88191 1.78221 1.39738 1.17409 0.90791 0.89734 0.89839 1.42414 1.56939 1.15659 1.25513 1.20546 1.06073 1.00914 0.95572 0.92158 0.95645 0.94694 0.92943 0.86296 0.83643 0.76136 0.76498 0.85719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.86 8.78 71.98 0.63 -5.23 15 2 C 0.07 3.45 2.48 -12.29 -0.03 3.42 15 3 H 0.01 0.39 7.87 -2.39 -0.02 0.37 15 4 C -0.52 -28.18 8.24 25.60 0.21 -27.97 15 5 H 0.05 2.85 7.60 -2.91 -0.02 2.83 15 6 C 0.02 0.84 5.30 84.65 0.45 1.29 15 7 N -0.92 -52.18 11.32 21.45 0.24 -51.93 15 8 Si 0.95 43.24 29.54 68.60 2.03 45.27 15 9 H -0.28 -12.41 7.11 99.48 0.71 -11.71 15 10 H -0.28 -12.59 7.11 99.48 0.71 -11.89 15 11 H -0.27 -11.85 7.11 99.48 0.71 -11.14 15 12 C 0.00 -0.12 4.73 -19.88 -0.09 -0.21 15 13 C -0.17 -6.60 8.70 22.29 0.19 -6.40 15 14 C -0.06 -2.05 9.82 22.27 0.22 -1.83 15 15 C -0.14 -4.40 6.34 22.44 0.14 -4.26 15 16 Cl -0.07 -1.82 27.60 -2.72 -0.08 -1.90 15 17 C 0.23 7.23 6.75 38.21 0.26 7.49 15 18 N -0.86 -20.21 9.05 -51.29 -0.46 -20.67 15 19 C -0.21 -7.76 9.52 22.39 0.21 -7.55 15 20 H 0.06 3.21 6.07 -2.39 -0.01 3.19 15 21 H 0.02 1.09 8.14 -2.39 -0.02 1.07 15 22 H 0.03 1.59 7.38 -2.39 -0.02 1.58 15 23 H 0.26 14.16 8.31 -92.71 -0.77 13.39 15 24 H 0.12 4.74 7.57 -2.91 -0.02 4.72 15 25 H 0.15 3.94 8.06 -2.91 -0.02 3.92 15 26 H 0.41 7.93 8.84 -92.71 -0.82 7.11 15 27 H 0.40 8.15 7.50 -92.71 -0.70 7.45 15 28 H 0.12 4.44 7.94 -2.91 -0.02 4.42 15 Total: -1.00 -58.78 254.78 3.60 -55.19 By element: Atomic # 1 Polarization: 15.63 SS G_CDS: -0.33 Total: 15.31 kcal Atomic # 6 Polarization: -43.45 SS G_CDS: 2.19 Total: -41.25 kcal Atomic # 7 Polarization: -72.39 SS G_CDS: -0.22 Total: -72.61 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 2.03 Total: 45.27 kcal Atomic # 17 Polarization: -1.82 SS G_CDS: -0.08 Total: -1.90 kcal Total: -58.78 3.60 -55.19 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260368739.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.689 kcal (2) G-P(sol) polarization free energy of solvation -58.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds